Csor.00g217690 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g217690
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein
Location	Csor_Chr10: 1915937 .. 1916626 (+)
RNA-Seq Expression	Csor.00g217690
Synteny	Csor.00g217690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGACCGTGAACGAGATCGAGACAGAGGACGCGACAGAGATAAAGATCGGGACCGTGATAGATATATAGACCGGGAGCGAGACCGTGACTACCGTGAACGTGACCGGCGTAGGGATCGAGAAGATCGTGATCGGGACCGGGAACGGCGTAGGGAGAAAGACGACCGTGACCATGAACGGGAGCGCGGCAGGGGTAAAAGGTCTCATACTCCTGAACGCCCCAGATCCCGCCACACACGCTCTCGCACCCGCTCGCCGGACCGGCACCGGTCGCGATCTCTTTCTCGTACCCCTGAGGATCGATCCCTTCGCCGCCGGCATCGCTCACCCTCCCCGGACCATGTTAGGAAGCGTCATCGCCGGGATTTGACTGCGGACGATGAAAAGGACCGGCAGAAAGCAGTGTCTGACTTCGTTGATGGCATTGCGAAGGAGCAGCACAAACAAAAGAATAATAAAGATAGCGTTGGTGGCGGAGAATCAGTGGAGGAGGCCATGGCTGATGAGGATGAAATTGAGATGATGAAGAAATTAGGTATTCCCGTGGGTTTCGATTCGACCAAGGGCAAGCCTGTTGCCGGTGCTGATGTGAGTGGCGTTAGGGCAGTGACCAAGAGACAGCCTAGGCAGTACATGAATCGTCGTGGCGGGTTCAACCGGCCGTTGCCGGCTGAGCGGACCCGGTAG

mRNA sequence

ATGGTCGACCGTGAACGAGATCGAGACAGAGGACGCGACAGAGATAAAGATCGGGACCGTGATAGATATATAGACCGGGAGCGAGACCGTGACTACCGTGAACGTGACCGGCGTAGGGATCGAGAAGATCGTGATCGGGACCGGGAACGGCGTAGGGAGAAAGACGACCGTGACCATGAACGGGAGCGCGGCAGGGGTAAAAGGTCTCATACTCCTGAACGCCCCAGATCCCGCCACACACGCTCTCGCACCCGCTCGCCGGACCGGCACCGGTCGCGATCTCTTTCTCGTACCCCTGAGGATCGATCCCTTCGCCGCCGGCATCGCTCACCCTCCCCGGACCATGTTAGGAAGCGTCATCGCCGGGATTTGACTGCGGACGATGAAAAGGACCGGCAGAAAGCAGTGTCTGACTTCGTTGATGGCATTGCGAAGGAGCAGCACAAACAAAAGAATAATAAAGATAGCGTTGGTGGCGGAGAATCAGTGGAGGAGGCCATGGCTGATGAGGATGAAATTGAGATGATGAAGAAATTAGGTATTCCCGTGGGTTTCGATTCGACCAAGGGCAAGCCTGTTGCCGGTGCTGATGTGAGTGGCGTTAGGGCAGTGACCAAGAGACAGCCTAGGCAGTACATGAATCGTCGTGGCGGGTTCAACCGGCCGTTGCCGGCTGAGCGGACCCGGTAG

Coding sequence (CDS)

ATGGTCGACCGTGAACGAGATCGAGACAGAGGACGCGACAGAGATAAAGATCGGGACCGTGATAGATATATAGACCGGGAGCGAGACCGTGACTACCGTGAACGTGACCGGCGTAGGGATCGAGAAGATCGTGATCGGGACCGGGAACGGCGTAGGGAGAAAGACGACCGTGACCATGAACGGGAGCGCGGCAGGGGTAAAAGGTCTCATACTCCTGAACGCCCCAGATCCCGCCACACACGCTCTCGCACCCGCTCGCCGGACCGGCACCGGTCGCGATCTCTTTCTCGTACCCCTGAGGATCGATCCCTTCGCCGCCGGCATCGCTCACCCTCCCCGGACCATGTTAGGAAGCGTCATCGCCGGGATTTGACTGCGGACGATGAAAAGGACCGGCAGAAAGCAGTGTCTGACTTCGTTGATGGCATTGCGAAGGAGCAGCACAAACAAAAGAATAATAAAGATAGCGTTGGTGGCGGAGAATCAGTGGAGGAGGCCATGGCTGATGAGGATGAAATTGAGATGATGAAGAAATTAGGTATTCCCGTGGGTTTCGATTCGACCAAGGGCAAGCCTGTTGCCGGTGCTGATGTGAGTGGCGTTAGGGCAGTGACCAAGAGACAGCCTAGGCAGTACATGAATCGTCGTGGCGGGTTCAACCGGCCGTTGCCGGCTGAGCGGACCCGGTAG

Protein sequence

MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDHVRKRHRRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR

Homology

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BLAST of Csor.00g217690 vs. ExPASy Swiss-Prot
Match: Q8WVK2 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP27 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-08
Identity = 80/188 (42.55%), Postives = 96/188 (51.06%), Query Frame = 0


Query: 37  RRRDREDRDRDRERRREKDDRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLS 96
           R R R  R   RERRR +     ERER R +RS + ER R    RSR+RSP R RSRS  
Sbjct: 3   RSRSRSPR---RERRRSR-STSRERERRRRERSRSRERDR---RRSRSRSPHRRRSRS-- 62

Query: 97  RTPEDRSLRRRHRSPSPDHVRKRHRRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDS 156
                    RRHRS SP   R + RR    D+EK   K          K + +Q   +D 
Sbjct: 63  --------PRRHRSTSPSPSRLKERR----DEEKKETKE--------TKSKERQITEEDL 122

Query: 157 VGGGESVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGA-DVSGVRAVTKRQPRQYMNR 216
            G           E+EIEMMK +G    FDSTKGK V G+ +   +    KR+ RQYMNR
Sbjct: 123 EG---------KTEEEIEMMKLMGF-ASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNR 151

Query: 217 RGGFNRPL 224
           +GGFNRPL
Sbjct: 183 KGGFNRPL 151

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BLAST of Csor.00g217690 vs. ExPASy Swiss-Prot
Match: Q8K194 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090 GN=Snrnp27 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-07
Identity = 81/199 (40.70%), Postives = 98/199 (49.25%), Query Frame = 0


Query: 26  RERDRDYRERDRRRDREDRDRDRERRREKDDRDHERERGRGKRSHTPERPRSRHTRSRTR 85
           R R R  R R+RRR R    RDRERRR +  R  ER+R                 RSR+R
Sbjct: 3   RSRSRSPR-RERRRSR-STSRDRERRRRERSRSRERDR----------------RRSRSR 62

Query: 86  SPDRHRSRSLSRTPEDRSLRRRHRSPSPDHVRKRHRRDLTADDEKDRQKAVSDFVDGIAK 145
           SP R RSRS           RRHRS SP   R + RR    D+EK   K +        K
Sbjct: 63  SPHRRRSRS----------PRRHRSTSPSPSRLKERR----DEEKKETKEI--------K 122

Query: 146 EQHKQKNNKDSVGGGESVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGA-DVSGVRAV 205
            + +Q   +D  G           E+EIEMMK +G    FDSTKGK V G+ +   +   
Sbjct: 123 NKERQITEEDLEG---------KTEEEIEMMKLMGF-ASFDSTKGKKVDGSVNAYAINVS 151

Query: 206 TKRQPRQYMNRRGGFNRPL 224
            KR+ RQYMNR+GGFNRPL
Sbjct: 183 QKRKYRQYMNRKGGFNRPL 151

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BLAST of Csor.00g217690 vs. ExPASy Swiss-Prot
Match: Q6DDA4 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus tropicalis OX=8364 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 77/188 (40.96%), Postives = 97/188 (51.60%), Query Frame = 0


Query: 37  RRRDREDRDRDRERRREKDDRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLS 96
           R R R   +R RERRR +     ERER R +RS + ER      RSR+RSP R RSRS  
Sbjct: 3   RSRSRSP-ERRRERRRSR-SASRERERRRRERSRSRER-----RRSRSRSPHRRRSRS-- 62

Query: 97  RTPEDRSLRRRHRSPSPDHVRKRHRRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDS 156
                    RRHRS S    R + RRD   DD+KD +++       IA E  + K     
Sbjct: 63  --------PRRHRSSSISPGRLKDRRD---DDKKDSKESKGAKERQIAAEDLEGKT---- 122

Query: 157 VGGGESVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGA-DVSGVRAVTKRQPRQYMNR 216
                        E+EIEMMK +G    FD++KGK V G+ +   +    KR+ RQYMNR
Sbjct: 123 -------------EEEIEMMKMMGFAT-FDTSKGKKVDGSVNAYAINVSQKRKYRQYMNR 152

Query: 217 RGGFNRPL 224
           +GGFNRPL
Sbjct: 183 KGGFNRPL 152

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BLAST of Csor.00g217690 vs. ExPASy Swiss-Prot
Match: Q6DH74 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Danio rerio OX=7955 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 8.8e-05
Identity = 77/199 (38.69%), Postives = 98/199 (49.25%), Query Frame = 0


Query: 26  RERDRDYRERDRRRDREDRDRDRERRREKDDRDHERERGRGKRSHTPERPRSRHTRSRTR 85
           R R R    R+RRR R    RDRERRR + +R   R+R R               RSR+R
Sbjct: 3   RSRSRTPPRRERRRSRSS-SRDRERRRRERERSRSRDRDR--------------RRSRSR 62

Query: 86  SPDRHRSRSLSRTPEDRSLRRRHRSPSPDHVRKRHRRDLTADDEKDRQKAVSDFVDGIAK 145
           SP R RSRS           RRHRS S   +R++ RRD   DD KD ++  +  V  I+ 
Sbjct: 63  SPHRRRSRS----------PRRHRSSSLSPLRQKDRRD---DDRKDVKEKPAK-VHQISA 122

Query: 146 EQHKQKNNKDSVGGGESVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGA-DVSGVRAV 205
           E  + K                  E+EIEMMK +G    F+++KGK   G+     V   
Sbjct: 123 EDMQGKT-----------------EEEIEMMKLMGFG-SFETSKGKKKDGSIKAFAVNVS 154

Query: 206 TKRQPRQYMNRRGGFNRPL 224
            KR+ RQYMNR+GGFNRPL
Sbjct: 183 QKRKYRQYMNRKGGFNRPL 154

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BLAST of Csor.00g217690 vs. ExPASy Swiss-Prot
Match: Q9ZR40 (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia OX=4092 GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 7.5e-04
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 3   DRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHERE 62
           DR+RDRDRGRDRD+ RDRD+  +RE+DRD    DR RDR DR R++ER R++DD D  R 
Sbjct: 72  DRDRDRDRGRDRDRGRDRDKDREREKDRDRHHGDRHRDRSDR-REKERTRDRDDDDRHRT 131

Query: 63  RGRG-KRSHTPERPRSRHTRSRTRSPDRHRSRSLSRT 99
           R    +R H  +R      RSR+R    HRSRS SR+
Sbjct: 132 RDYDQQREHAKDRESRHRHRSRSRGRSEHRSRSRSRS 167

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BLAST of Csor.00g217690 vs. NCBI nr
Match: KAG6589703.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023383.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 404 bits (1038), Expect = 3.54e-141
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHE 60
           MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHE
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHE 60

Query: 61  RERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDHVRKRH 120
           RERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDHVRKRH
Sbjct: 61  RERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDHVRKRH 120

Query: 121 RRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEMMKKLG 180
           RRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEMMKKLG
Sbjct: 121 RRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEMMKKLG 180

Query: 181 IPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 229
           IPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 IPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 229

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BLAST of Csor.00g217690 vs. NCBI nr
Match: XP_008453595.1 (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo] >KAA0058267.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo var. makuwa] >TYK11820.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 354 bits (908), Expect = 2.51e-121
Identity = 210/234 (89.74%), Postives = 215/234 (91.88%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRD-----RDRERRREKD 60
           MVDRERDRDRGRDRDKDRDRDRY DRERDRD+RERDRRRDREDRD     RDRERRR+ D
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDLD 60

Query: 61  DRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDH 120
           DRD ERERGR KRSHTP+R RSR  RSRTRSPDRHRSRSLSRTPEDRS RRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSHTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120

Query: 121 VRKRHRRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEM 180
            RKRHRRDLTADDEK+RQKAVSDFVDGIAKEQHKQKNNKD+ G GE VEEAMADEDEIEM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNAGSGEVVEEAMADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 229
           MKKLGIPVGFDSTKGKPV GADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232

[Close]

BLAST of Csor.00g217690 vs. NCBI nr
Match: XP_004146322.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis sativus] >KGN65465.1 hypothetical protein Csa_019811 [Cucumis sativus])

HSP 1 Score: 350 bits (898), Expect = 8.37e-120
Identity = 208/234 (88.89%), Postives = 216/234 (92.31%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRD-----RDRERRREKD 60
           MVDRERDRDRGRDRDKDRDRDRY DRERDRD+RERDRRRDREDRD     RDRERRR++D
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60

Query: 61  DRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDH 120
           DRD ERERGR KRS TP+R RSR  RSRTRSPDRHRSRSLSRTPEDR  RRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSLTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRPSRRRHRSPSPDH 120

Query: 121 VRKRHRRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEM 180
            RKRHRRDLTADDEK+RQKAVSDFVDGIAKEQHKQKNNKD+VGGGE VEEAMADEDE+EM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEM 180

Query: 181 MKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 229
           MKKLGIPVGFDSTKGKPV GADVSGVR VTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 232

[Close]

BLAST of Csor.00g217690 vs. NCBI nr
Match: XP_023530476.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530477.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530478.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530479.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 347 bits (890), Expect = 1.04e-118
Identity = 200/229 (87.34%), Postives = 212/229 (92.58%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHE 60
           MVDRERDRDRGRDRDKDRDRDRY DRERDRD+RERDR     DRDR+RERRR+++DRD E
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDR-----DRDRERERRRDREDRDRE 60

Query: 61  RERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDHVRKRH 120
           RERGR KRSHTP+R RSRHTRSRTRSPDRHR+RSLSR+PEDRSLRRRHRSPSP+H RKRH
Sbjct: 61  RERGRSKRSHTPDRLRSRHTRSRTRSPDRHRTRSLSRSPEDRSLRRRHRSPSPEHARKRH 120

Query: 121 RRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEMMKKLG 180
           RRDLT DD+K+RQK VSDFVDGIAKEQHKQK NKD VGG E VEEA+ADEDEIEMMKKLG
Sbjct: 121 RRDLTVDDDKERQKVVSDFVDGIAKEQHKQKKNKDGVGGEEVVEEAVADEDEIEMMKKLG 180

Query: 181 IPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 229
           IPVGFDSTKGKPV GADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 IPVGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]

BLAST of Csor.00g217690 vs. NCBI nr
Match: XP_023007065.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita maxima] >XP_023007073.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita maxima])

HSP 1 Score: 347 bits (889), Expect = 1.48e-118
Identity = 200/229 (87.34%), Postives = 212/229 (92.58%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHE 60
           MVDRERDRDRGRDRDKDRDRDRY DRERDRD+RERDR     DRDR+RERRR++DDRD E
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDR-----DRDRERERRRDRDDRDRE 60

Query: 61  RERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDHVRKRH 120
           RERGR KRSHTP+R RSRHTRSRTRSPD+HR+RSLSR+PEDRSLRRRHRSPSP+H RKRH
Sbjct: 61  RERGRSKRSHTPDRLRSRHTRSRTRSPDQHRTRSLSRSPEDRSLRRRHRSPSPEHARKRH 120

Query: 121 RRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEMMKKLG 180
           RRDLT DD+K+RQK VSDFVDGIAKEQHKQK NKD VGG E VEEA+ADEDEIEMMKKLG
Sbjct: 121 RRDLTVDDDKERQKVVSDFVDGIAKEQHKQKKNKDRVGGEEVVEEAVADEDEIEMMKKLG 180

Query: 181 IPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 229
           IPVGFDSTKGKPV GADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 IPVGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]

BLAST of Csor.00g217690 vs. ExPASy TrEMBL
Match: A0A5D3CK71 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00330 PE=3 SV=1)

HSP 1 Score: 354 bits (908), Expect = 1.22e-121
Identity = 210/234 (89.74%), Postives = 215/234 (91.88%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRD-----RDRERRREKD 60
           MVDRERDRDRGRDRDKDRDRDRY DRERDRD+RERDRRRDREDRD     RDRERRR+ D
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDLD 60

Query: 61  DRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDH 120
           DRD ERERGR KRSHTP+R RSR  RSRTRSPDRHRSRSLSRTPEDRS RRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSHTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120

Query: 121 VRKRHRRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEM 180
            RKRHRRDLTADDEK+RQKAVSDFVDGIAKEQHKQKNNKD+ G GE VEEAMADEDEIEM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNAGSGEVVEEAMADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 229
           MKKLGIPVGFDSTKGKPV GADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232

[Close]

BLAST of Csor.00g217690 vs. ExPASy TrEMBL
Match: A0A1S3BW27 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo OX=3656 GN=LOC103494258 PE=3 SV=1)

HSP 1 Score: 354 bits (908), Expect = 1.22e-121
Identity = 210/234 (89.74%), Postives = 215/234 (91.88%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRD-----RDRERRREKD 60
           MVDRERDRDRGRDRDKDRDRDRY DRERDRD+RERDRRRDREDRD     RDRERRR+ D
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDLD 60

Query: 61  DRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDH 120
           DRD ERERGR KRSHTP+R RSR  RSRTRSPDRHRSRSLSRTPEDRS RRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSHTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120

Query: 121 VRKRHRRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEM 180
            RKRHRRDLTADDEK+RQKAVSDFVDGIAKEQHKQKNNKD+ G GE VEEAMADEDEIEM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNAGSGEVVEEAMADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 229
           MKKLGIPVGFDSTKGKPV GADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232

[Close]

BLAST of Csor.00g217690 vs. ExPASy TrEMBL
Match: A0A0A0LU61 (SNRNP27 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G423230 PE=3 SV=1)

HSP 1 Score: 350 bits (898), Expect = 4.05e-120
Identity = 208/234 (88.89%), Postives = 216/234 (92.31%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRD-----RDRERRREKD 60
           MVDRERDRDRGRDRDKDRDRDRY DRERDRD+RERDRRRDREDRD     RDRERRR++D
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60

Query: 61  DRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDH 120
           DRD ERERGR KRS TP+R RSR  RSRTRSPDRHRSRSLSRTPEDR  RRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSLTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRPSRRRHRSPSPDH 120

Query: 121 VRKRHRRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEM 180
            RKRHRRDLTADDEK+RQKAVSDFVDGIAKEQHKQKNNKD+VGGGE VEEAMADEDE+EM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEM 180

Query: 181 MKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 229
           MKKLGIPVGFDSTKGKPV GADVSGVR VTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 232

[Close]

BLAST of Csor.00g217690 vs. ExPASy TrEMBL
Match: A0A6J1L1Y6 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita maxima OX=3661 GN=LOC111499666 PE=3 SV=1)

HSP 1 Score: 347 bits (889), Expect = 7.18e-119
Identity = 200/229 (87.34%), Postives = 212/229 (92.58%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHE 60
           MVDRERDRDRGRDRDKDRDRDRY DRERDRD+RERDR     DRDR+RERRR++DDRD E
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDR-----DRDRERERRRDRDDRDRE 60

Query: 61  RERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDHVRKRH 120
           RERGR KRSHTP+R RSRHTRSRTRSPD+HR+RSLSR+PEDRSLRRRHRSPSP+H RKRH
Sbjct: 61  RERGRSKRSHTPDRLRSRHTRSRTRSPDQHRTRSLSRSPEDRSLRRRHRSPSPEHARKRH 120

Query: 121 RRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEMMKKLG 180
           RRDLT DD+K+RQK VSDFVDGIAKEQHKQK NKD VGG E VEEA+ADEDEIEMMKKLG
Sbjct: 121 RRDLTVDDDKERQKVVSDFVDGIAKEQHKQKKNKDRVGGEEVVEEAVADEDEIEMMKKLG 180

Query: 181 IPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 229
           IPVGFDSTKGKPV GADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 IPVGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]

BLAST of Csor.00g217690 vs. ExPASy TrEMBL
Match: A0A6J1EW85 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111436672 PE=3 SV=1)

HSP 1 Score: 341 bits (875), Expect = 9.06e-117
Identity = 198/229 (86.46%), Postives = 210/229 (91.70%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHE 60
           MVDRERDRDRGRDRDKDRDRDRY DRERDRD+RERDR       DR+RERRR+++DRD E
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDR-------DRERERRRDREDRDRE 60

Query: 61  RERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDHVRKRH 120
           RERGR KRSHTP+R RSRHTRSRTRS DRHR+RSLSR+PEDRSLRRRHRSPSP+H RKRH
Sbjct: 61  RERGRSKRSHTPDRLRSRHTRSRTRSLDRHRTRSLSRSPEDRSLRRRHRSPSPEHARKRH 120

Query: 121 RRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEMMKKLG 180
           RRDLT DD+K+RQK VSDFVDGIAKEQHKQK NKDSVGG E VEEA+ADEDEIEMMKKLG
Sbjct: 121 RRDLTVDDDKERQKVVSDFVDGIAKEQHKQKKNKDSVGGEEVVEEAVADEDEIEMMKKLG 180

Query: 181 IPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 229
           IPVGFDSTKGKPV GADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 IPVGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 222

[Close]

BLAST of Csor.00g217690 vs. TAIR 10
Match: AT5G57370.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777 (InterPro:IPR013957); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 155.2 bits (391), Expect = 6.2e-38
Identity = 133/236 (56.36%), Postives = 159/236 (67.37%), Query Frame = 0


Query: 5   ERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDREDRDRDRERRREKDDRDHERERG 64
           ERDR R R+RDKDR+ D             RDRRR R+DRDRDR+R RE+ DR+ +R+RG
Sbjct: 3   ERDR-RERERDKDREPD-------------RDRRRGRDDRDRDRDRDRER-DRERDRDRG 62

Query: 65  -RGKRSHTPERPRSRHTRSR-TRSPDRHRSRSLS---RTPEDRSLRRRHRSPSPDHVRKR 124
            R K+S +  R    H R+R  RSP+R+RSRS S       DR    R RSPSPD   ++
Sbjct: 63  LRNKKSRS--RTPDHHARARHVRSPERYRSRSRSIDRDRDRDRQRHHRRRSPSPDAPSRK 122

Query: 125 HRRDLTADDEKD--RQKAVSDFVD----GIAKEQHKQKNNKDSVGGGESVEEAMADEDEI 184
             R  + DDEK+  R++ V+D VD     I K++ KQ ++    GGGE  EE M D +EI
Sbjct: 123 RPRQGSVDDEKERNRKRVVTDSVDENASTITKKKDKQPSDAADNGGGED-EEGM-DVNEI 182

Query: 185 EMMKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 230
           EMMK LGIP GFDSTKGKPVAGADVSG+RAVTKRQPRQYMNRRGGFNRPLPAER R
Sbjct: 183 EMMKMLGIPTGFDSTKGKPVAGADVSGIRAVTKRQPRQYMNRRGGFNRPLPAERNR 219

The following BLAST results are available for this feature:

BLAST of Csor.00g217690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WVK2	2.9e-08	42.55	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens OX=9606 ...	[more]
Q8K194	1.9e-07	40.70	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090...	[more]
Q6DDA4	1.6e-06	40.96	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus tropicalis OX...	[more]
Q6DH74	8.8e-05	38.69	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Danio rerio OX=7955 G...	[more]
Q9ZR40	7.5e-04	52.58	Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia OX=4092 GN=U2A...	[more]

BLAST of Csor.00g217690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589703.1	3.54e-141	100.00	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argy...	[more]
XP_008453595.1	2.51e-121	89.74	PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo...	[more]
XP_004146322.1	8.37e-120	88.89	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis sativus] >KGN65...	[more]
XP_023530476.1	1.04e-118	87.34	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo sub...	[more]
XP_023007065.1	1.48e-118	87.34	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita maxima] ...	[more]

BLAST of Csor.00g217690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CK71	1.22e-121	89.74	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo var. mak...	[more]
A0A1S3BW27	1.22e-121	89.74	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo OX=3656 ...	[more]
A0A0A0LU61	4.05e-120	88.89	SNRNP27 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G423230 PE=...	[more]
A0A6J1L1Y6	7.18e-119	87.34	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita maxima...	[more]
A0A6J1EW85	9.06e-117	86.46	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita moscha...	[more]

BLAST of Csor.00g217690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57370.1	6.2e-38	56.36	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013957	U4/U6.U5 small nuclear ribonucleoprotein 27kDa protein	PFAM	PF08648	SNRNP27	coord: 170..225 e-value: 1.4E-24 score: 85.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..166
None	No IPR available	PANTHER	PTHR31077	U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN	coord: 29..229
None	No IPR available	PANTHER	PTHR31077:SF4	BNAA10G11430D PROTEIN	coord: 29..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g217690.m01	Csor.00g217690.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0005634	nucleus