Csor.00g216660 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g216660
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Serine-rich protein-related
Location	Csor_Chr10: 2408040 .. 2408535 (+)
RNA-Seq Expression	Csor.00g216660
Synteny	Csor.00g216660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCAAAATCTGGATCCTCCAATCCCAAACTGCAGAGCATCGGCGGTTCCCGCAAGTGCCTCTGTTCTCCCACCACCCATCCTGGCTCTTTCCGCTGCAGTATTCATCGGAACCGCCGCAAGGTTTCCGCTAGGTCATCGTCCTCATCCATTGCTGCCATTACCACTGCTCAATTGAAGCTTACGATGTTGGCGAAGGCGAATGCGTTGAGGTCGTTTCTTCAGCAGATCATCAATCCCTCCAGTAAAGATCTTCAGCGGCGGAGGAATTTTCGTCCCAAACCTTCCAGGTTTTGCTTGATGAACAATCATGGAACTGGATTGGCTGTTTCTTAAATCGAATCAAGTTTCCTATTTCTGGATGTTCGTTCTTTCGATTCTCTTCGCTGATTTTCGTTTTTCTCGATTTTTCCGTGTGAGTTTGTGTAGGTCTAGCGTTTATGTACAGATCCAACAGGATATTGCCTTAGTTCAGTTCGATCTTGATGATTGA

mRNA sequence

ATGGCCTCAAAATCTGGATCCTCCAATCCCAAACTGCAGAGCATCGGCGGTTCCCGCAAGTGCCTCTGTTCTCCCACCACCCATCCTGGCTCTTTCCGCTGCAGTATTCATCGGAACCGCCGCAAGGTTTCCGCTAGGTCATCGTCCTCATCCATTGCTGCCATTACCACTGCTCAATTGAAGCTTACGATGTTGGCGAAGGCGAATGCGTTGAGGTCGTTTCTTCAGCAGATCATCAATCCCTCCAGTAAAGATCTTCAGCGGCGGAGGAATTTTCGTCCCAAACCTTCCAGGTCTAGCGTTTATGTACAGATCCAACAGGATATTGCCTTAGTTCAGTTCGATCTTGATGATTGA

Coding sequence (CDS)

ATGGCCTCAAAATCTGGATCCTCCAATCCCAAACTGCAGAGCATCGGCGGTTCCCGCAAGTGCCTCTGTTCTCCCACCACCCATCCTGGCTCTTTCCGCTGCAGTATTCATCGGAACCGCCGCAAGGTTTCCGCTAGGTCATCGTCCTCATCCATTGCTGCCATTACCACTGCTCAATTGAAGCTTACGATGTTGGCGAAGGCGAATGCGTTGAGGTCGTTTCTTCAGCAGATCATCAATCCCTCCAGTAAAGATCTTCAGCGGCGGAGGAATTTTCGTCCCAAACCTTCCAGGTCTAGCGTTTATGTACAGATCCAACAGGATATTGCCTTAGTTCAGTTCGATCTTGATGATTGA

Protein sequence

MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRSSVYVQIQQDIALVQFDLDD

Homology

[Close]

BLAST of Csor.00g216660 vs. NCBI nr
Match: KAG6589806.1 (hypothetical protein SDJN03_15229, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223 bits (567), Expect = 5.38e-73
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL
Sbjct: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRSSVYVQIQQDIALVQFDLDD 118
           KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRSSVYVQIQQDIALVQFDLDD
Sbjct: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRSSVYVQIQQDIALVQFDLDD 118

[Close]

BLAST of Csor.00g216660 vs. NCBI nr
Match: XP_022921799.1 (uncharacterized protein LOC111429944 [Cucurbita moschata] >KAG7023478.1 hypothetical protein SDJN02_14503, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186 bits (472), Expect = 1.36e-58
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
          MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL
Sbjct: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61 KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSR 98
          KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSR
Sbjct: 61 KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSR 98

[Close]

BLAST of Csor.00g216660 vs. NCBI nr
Match: XP_023515429.1 (uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183 bits (465), Expect = 1.59e-57
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
          MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL
Sbjct: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61 KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSR 98
          KLTMLAKANALRSFL QIINPSSKDLQRRRNFRPKPSR
Sbjct: 61 KLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSR 98

[Close]

BLAST of Csor.00g216660 vs. NCBI nr
Match: XP_023003805.1 (uncharacterized protein LOC111497277 [Cucurbita maxima])

HSP 1 Score: 149 bits (377), Expect = 4.08e-44
Identity = 77/98 (78.57%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
          MA+KS S+N KLQS+G SRKCLCSPTTHPGSFRCS HRNRRK SARSSSSSI+AIT+AQL
Sbjct: 1  MATKSRSANSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSISAITSAQL 60

Query: 61 KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSR 98
          +LT+ AKANA+R+FL  II PSS DLQRRRNF P+PSR
Sbjct: 61 ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFLPRPSR 98

[Close]

BLAST of Csor.00g216660 vs. NCBI nr
Match: XP_022927032.1 (uncharacterized protein LOC111433980 [Cucurbita moschata] >KAG7021749.1 hypothetical protein SDJN02_15476, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149 bits (375), Expect = 8.24e-44
Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
          MA+KS S N KLQS+G SRKCLCSPTTHPGSFRCS HRNRRK SARSSSSSI AIT+AQL
Sbjct: 1  MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60

Query: 61 KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSR 98
          +LT+ AKANA+R+FL  II PSS DLQRRRNF P+PSR
Sbjct: 61 ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSR 98

[Close]

BLAST of Csor.00g216660 vs. ExPASy TrEMBL
Match: A0A6J1E1K3 (uncharacterized protein LOC111429944 OS=Cucurbita moschata OX=3662 GN=LOC111429944 PE=4 SV=1)

HSP 1 Score: 186 bits (472), Expect = 6.60e-59
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
          MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL
Sbjct: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61 KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSR 98
          KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSR
Sbjct: 61 KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSR 98

[Close]

BLAST of Csor.00g216660 vs. ExPASy TrEMBL
Match: A0A6J1KSU0 (uncharacterized protein LOC111497277 OS=Cucurbita maxima OX=3661 GN=LOC111497277 PE=4 SV=1)

HSP 1 Score: 149 bits (377), Expect = 1.98e-44
Identity = 77/98 (78.57%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
          MA+KS S+N KLQS+G SRKCLCSPTTHPGSFRCS HRNRRK SARSSSSSI+AIT+AQL
Sbjct: 1  MATKSRSANSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSISAITSAQL 60

Query: 61 KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSR 98
          +LT+ AKANA+R+FL  II PSS DLQRRRNF P+PSR
Sbjct: 61 ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFLPRPSR 98

[Close]

BLAST of Csor.00g216660 vs. ExPASy TrEMBL
Match: A0A6J1EG01 (uncharacterized protein LOC111433980 OS=Cucurbita moschata OX=3662 GN=LOC111433980 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 3.99e-44
Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
          MA+KS S N KLQS+G SRKCLCSPTTHPGSFRCS HRNRRK SARSSSSSI AIT+AQL
Sbjct: 1  MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60

Query: 61 KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSR 98
          +LT+ AKANA+R+FL  II PSS DLQRRRNF P+PSR
Sbjct: 61 ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSR 98

[Close]

BLAST of Csor.00g216660 vs. ExPASy TrEMBL
Match: A0A0A0LYY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1)

HSP 1 Score: 131 bits (330), Expect = 2.66e-37
Identity = 73/99 (73.74%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSA-RSSSSSIAAITTAQ 60
          MASKSGSS  K  + G SRKCLCSPTTHPGSFRCS HRNR K+S+ RSSSSS++ ITTA 
Sbjct: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60

Query: 61 LKLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSR 98
          L+L   AKANALRSFL Q+I PSS DLQRRRNF P+PSR
Sbjct: 61 LEL---AKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 96

[Close]

BLAST of Csor.00g216660 vs. ExPASy TrEMBL
Match: A0A6J1BZD6 (uncharacterized protein LOC111006991 OS=Momordica charantia OX=3673 GN=LOC111006991 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 1.94e-33
Identity = 62/80 (77.50%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 19 RKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANALRSFLQQI 78
          R+CLCSPT HPGSFRCS HRNRRKV + +SSSSIAAI+TAQL L MLAKANALR+FL QI
Sbjct: 10 RRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQI 69

Query: 79 INPSSKDLQRRRNFRPKPSR 98
          I PS  D QRRRNF P+PSR
Sbjct: 70 IKPSGNDPQRRRNFNPRPSR 89

[Close]

BLAST of Csor.00g216660 vs. TAIR 10
Match: AT5G11090.1 (serine-rich protein-related )

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-11
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 18  SRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANAL------ 77
           SR+C+CSPTTHPGSFRCS+H+N     A       A+ TT  L +   A  N+L      
Sbjct: 120 SRRCMCSPTTHPGSFRCSLHKN----VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGV 179

Query: 78  -----RSFLQQIINPSSKDLQRRRNFRPKPSRSSVYVQIQQD 109
                R  L  +I PSS  L+RR  ++P+PSR S+  +  ++
Sbjct: 180 EGEWVRRALTTLIRPSSHHLKRRAAYQPRPSRLSIMAKADEN 217

[Close]

BLAST of Csor.00g216660 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-09
Identity = 37/91 (40.66%), Postives = 48/91 (52.75%), Query Frame = 0


Query: 19  RKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANAL------- 78
           R+C+CSPTTHPGSFRCS+H+N     A       A+ TT  L +   A  N+L       
Sbjct: 124 RRCMCSPTTHPGSFRCSLHKN----VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVE 183

Query: 79  ----RSFLQQIINPSSKDLQRRRNFRPKPSR 99
               R  L  +I PSS  L+RR  + P+ SR
Sbjct: 184 GEWVRRALTTLIRPSSHQLKRRSAYEPRRSR 210

[Close]

BLAST of Csor.00g216660 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related )

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-09
Identity = 37/91 (40.66%), Postives = 48/91 (52.75%), Query Frame = 0


Query: 19  RKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANAL------- 78
           R+C+CSPTTHPGSFRCS+H+N     A       A+ TT  L +   A  N+L       
Sbjct: 124 RRCMCSPTTHPGSFRCSLHKN----VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVE 183

Query: 79  ----RSFLQQIINPSSKDLQRRRNFRPKPSR 99
               R  L  +I PSS  L+RR  + P+ SR
Sbjct: 184 GEWVRRALTTLIRPSSHQLKRRSAYEPRRSR 210

[Close]

BLAST of Csor.00g216660 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 39/101 (38.61%), Postives = 46/101 (45.54%), Query Frame = 0


Query: 19  RKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSI---------AAITTAQLKLTMLAKAN 78
           RKCLCSPTTHPGSFRCS HR      +++ +SS                 L L  LA  N
Sbjct: 69  RKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVNVGLNLRKLALMN 128

Query: 79  AL------------RSFLQQIINPSSKDLQRRRNFRPKPSR 99
           +L            RS    +  PSS    RR  FRP+ SR
Sbjct: 129 SLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSR 169

[Close]

BLAST of Csor.00g216660 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.8e-04
Identity = 21/38 (55.26%), Postives = 24/38 (63.16%), Query Frame = 0


Query: 2  ASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRN 40
          A + GS     Q+      CLCSPTTHPGSFRC IHR+
Sbjct: 25 AVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRS 62

The following BLAST results are available for this feature:

BLAST of Csor.00g216660 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g216660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589806.1	5.38e-73	100.00	hypothetical protein SDJN03_15229, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022921799.1	1.36e-58	100.00	uncharacterized protein LOC111429944 [Cucurbita moschata] >KAG7023478.1 hypothet...	[more]
XP_023515429.1	1.59e-57	98.98	uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo]	[more]
XP_023003805.1	4.08e-44	78.57	uncharacterized protein LOC111497277 [Cucurbita maxima]	[more]
XP_022927032.1	8.24e-44	78.57	uncharacterized protein LOC111433980 [Cucurbita moschata] >KAG7021749.1 hypothet...	[more]

BLAST of Csor.00g216660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1K3	6.60e-59	100.00	uncharacterized protein LOC111429944 OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]
A0A6J1KSU0	1.98e-44	78.57	uncharacterized protein LOC111497277 OS=Cucurbita maxima OX=3661 GN=LOC111497277...	[more]
A0A6J1EG01	3.99e-44	78.57	uncharacterized protein LOC111433980 OS=Cucurbita moschata OX=3662 GN=LOC1114339...	[more]
A0A0A0LYY6	2.66e-37	73.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1	[more]
A0A6J1BZD6	1.94e-33	77.50	uncharacterized protein LOC111006991 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of Csor.00g216660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11090.1	2.6e-11	39.22	serine-rich protein-related	[more]
AT5G25280.1	4.1e-09	40.66	serine-rich protein-related	[more]
AT5G25280.2	4.1e-09	40.66	serine-rich protein-related	[more]
AT5G20370.1	1.3e-07	38.61	serine-rich protein-related	[more]
AT1G67910.1	1.8e-04	55.26	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 13..104
None	No IPR available	PANTHER	PTHR33132:SF63	SUBFAMILY NOT NAMED	coord: 13..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g216660.m01	Csor.00g216660.m01	mRNA