Csor.00g216390 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g216390
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Location	Csor_Chr10: 2560347 .. 2562631 (-)
RNA-Seq Expression	Csor.00g216390
Synteny	Csor.00g216390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGTGAGGTTCAATCTGAAGACGAATTTCACAAGGACTGTGAAGTACGATCTCTGATTGAGCCGCGCCAATATCACTTTTGTATCATGTTGCTCTCTTTGTATGTTTAGGGTTTCTGTGTAATTTCGTAACCCTGTTTTTTTTTTTCCTTTGTTTATCGAGGAAGTATGTCTTAACTAGTTGAACTATGCTCAAATTGGTTTATTTTTCAACTATCAACTATTTCTTTCTTCACTATCCCTTATAGGCCAACGAATCATCGTCATCAACGAAACATGTTTTAGATTCATTTGGAACGGATCGTATGAGACGGTTAATGTTTGGTTTTTTATTTTATCACCGACCTGAAACTCAGGTACATGAATCATTTGCTACTATATTTAATGGTGCCATCTCTACCCATATCTCTACACATGTGCATGCATGAATATAGTATATACAAAATGTTAATTGTAGTTCAATTATAATAATACCTTTTCTTGACCTTGGTTGTTGAGTTGAAAAATAACACAATATATCAAAATTTAATACTATATGATTGAATTGATGCATTATAATATTTGAATGAAATAAAAAAAAAAATTATTTAAATTGATTTTTAATTTCTACATATAAATTTAAAATACAAACCTCTACACTTAAATTAAAATATTTCATAAATATTCATTTTGAATGGATCATAAGGGTTAAATTACTGTTTAATAGATATCTTAATATTTAAATTTATTTAATAACTTTCTAAATTTTTAAATTTGTATTTAATCGATTTTTAATTTTTTTTTTCTTTTAAAAGATGCAAAAATATTTTAATTACGTGGAATATGGGGGGAAAAAGGTACAAAAGGAAAATAATCGCTTCCCGCTTTCACAGCTAAACCAACGAACAAACCAGAATGTCCCTTCGCAATTTTTCGAAACCCTAGACCTCACTGAAAATTGCATTTGGATTTCCACGCTCTGATCTTCAAAAATCAATACCTTCTTCGATTCGTAACTCCAATTCTCCATTATTCGTCTTTCTAGTGTCTGAAATTTTGAGTTCAGGTCGATTCATGTCTCGTATTGAGCCCTATGTTTCGGATTCTTGCTCGGAGCAACAGTTTTCGCTACAAGAGGCTACCGCCGCAGCTTCTCCTCCTCCTCCTCTCCGTGCTAAAATTGGACGGCTCTTCTTTCGGTAATTTTTCCACTTTTTGTATTGGTTCATATATAACTCTGTTGCAAATTTTGTTGTGTTAGACGAACGTTTTTGTGAGCGATCTGATACGAGTATAGTCGGGAATGTTTTGATGTTGATGTGAGAATGCTATTAAAAAACGTTTGAATGTTCTGCCTTTGGACTGGATATATTGAATTGATTTGATTACCATTGGTAGCGTAGAAAGTCAGGACCTATGGTCCTAGGTGCGAGTTGCAAGGACGGCGACGGTGGCAGCAGTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAAAGAAGATGACAAGATTTCTTGGTAAGCTGTCGGGGGATTTGGAGTACTGAATCGCGCATATTAATCTAATATGTTGAATTGAAAATGAAAGTGTGTTCAATTGTTTATTTGGTTCAATTGCAGGCCACATGTGCGGTGTCATTTTTGCTTATGCTATAAGCATTACAAGCTGATCGACGACAAATCACGTATCAAACAGTTTGAAATCATAGATGTTGATAAGGTATTTCCTGAACTTTGTTTAGGCTATAAGCATTACAAGCTCATCCAAAAATTTCTTGTTATCCGCCCATTTTTTAGAGTTGTTTTCAAGATCCAACCAAATTTTGAAAACTTGAAAAGATAGTTCAGCTATTAAATAATTCCTTAAACTTATTTTCTGTCGGTTGTTTGTGACATTGAGTTTGGTATTGTATTTGATCGAGTAATTAACTAGTTATATATTCCCCCATGAAGCTGCATTTTGTGAACCGTGTAGCTTAATTTGTGGCAAGAATCTGTGGATTTGAGATGTCCCATCAAAGAATATATAGATAGAGCAAGGTAAGCGGGTTGAACGGCTTCTGGTATAAAGTGGTCAGAAGGTTTTGGGCGTGTGAATTATTATAAAGTGGTCAGATGGATCTTTTTCTGATGTTAAATTGGAAGTTTTGGTATAATATAAACAGTATGAATTTCATTTCATTTCTGCCACTCAAGACTGTACTTTTGTTTCTTTCAATTCAGAAATATAGTCCTTTACAAGATCGGTCTCTAAGGTACAGGAAGAATGGCAATGAAAATGCCCAAGTGATCTGA

mRNA sequence

ATGTTGGTGAGGTTCAATCTGAAGACGAATTTCACAAGGACTGTGAAGACGGCGACGGTGGCAGCAGTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAAAGAAGATGACAAGATTTCTTGGCCACATGTGCGGTGTCATTTTTGCTTATGCTATAAGCATTACAAGCTGATCGACGACAAATCACGTATCAAACAGTTTGAAATCATAGATGTTGATAAGAAATATAGTCCTTTACAAGATCGGTCTCTAAGGTACAGGAAGAATGGCAATGAAAATGCCCAAGTGATCTGA

Coding sequence (CDS)

ATGTTGGTGAGGTTCAATCTGAAGACGAATTTCACAAGGACTGTGAAGACGGCGACGGTGGCAGCAGTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAAAGAAGATGACAAGATTTCTTGGCCACATGTGCGGTGTCATTTTTGCTTATGCTATAAGCATTACAAGCTGATCGACGACAAATCACGTATCAAACAGTTTGAAATCATAGATGTTGATAAGAAATATAGTCCTTTACAAGATCGGTCTCTAAGGTACAGGAAGAATGGCAATGAAAATGCCCAAGTGATCTGA

Protein sequence

MLVRFNLKTNFTRTVKTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKKYSPLQDRSLRYRKNGNENAQVI

Homology

[Close]

BLAST of Csor.00g216390 vs. NCBI nr
Match: KAG6589833.1 (hypothetical protein SDJN03_15256, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210 bits (534), Expect = 1.67e-68
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MLVRFNLKTNFTRTVKTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYK 60
           MLVRFNLKTNFTRTVKTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYK
Sbjct: 1   MLVRFNLKTNFTRTVKTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYK 60

Query: 61  LIDDKSRIKQFEIIDVDKKYSPLQDRSLRYRKNGNENAQVI 101
           LIDDKSRIKQFEIIDVDKKYSPLQDRSLRYRKNGNENAQVI
Sbjct: 61  LIDDKSRIKQFEIIDVDKKYSPLQDRSLRYRKNGNENAQVI 101

[Close]

BLAST of Csor.00g216390 vs. NCBI nr
Match: KAG7023503.1 (hypothetical protein SDJN02_14529 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136 bits (342), Expect = 4.06e-39
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 16  KTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIID 75
           +TATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIID
Sbjct: 42  RTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIID 101

Query: 76  VDKK 79
           VDK+
Sbjct: 102 VDKR 105

[Close]

BLAST of Csor.00g216390 vs. NCBI nr
Match: XP_038880358.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida])

HSP 1 Score: 115 bits (287), Expect = 1.32e-30
Identity = 54/62 (87.10%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 16  KTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIID 75
           +TATVAAVRDAVESVFCGMSMNKEDDKISWPHV  HFCLCYKH+KLIDDKSRIK F I D
Sbjct: 55  RTATVAAVRDAVESVFCGMSMNKEDDKISWPHVWGHFCLCYKHFKLIDDKSRIKHFGIRD 114

Query: 76  VD 77
            D
Sbjct: 115 GD 116

[Close]

BLAST of Csor.00g216390 vs. NCBI nr
Match: XP_011655436.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN65130.1 hypothetical protein Csa_023500 [Cucumis sativus])

HSP 1 Score: 103 bits (258), Expect = 4.34e-26
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 16  KTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIID 75
           +TATVAAVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D
Sbjct: 55  RTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRD 114

Query: 76  VD 77
            D
Sbjct: 115 GD 116

[Close]

BLAST of Csor.00g216390 vs. NCBI nr
Match: XP_008443964.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo] >KAA0050134.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo var. makuwa] >TYK06388.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (258), Expect = 4.73e-26
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 16  KTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIID 75
           +TATVAAVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D
Sbjct: 58  RTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRD 117

Query: 76  VD 77
            D
Sbjct: 118 GD 119

[Close]

BLAST of Csor.00g216390 vs. ExPASy TrEMBL
Match: A0A0A0LT94 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 2.10e-26
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 16  KTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIID 75
           +TATVAAVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D
Sbjct: 55  RTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRD 114

Query: 76  VD 77
            D
Sbjct: 115 GD 116

[Close]

BLAST of Csor.00g216390 vs. ExPASy TrEMBL
Match: A0A5A7U4H4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00840 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 2.29e-26
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 16  KTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIID 75
           +TATVAAVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D
Sbjct: 58  RTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRD 117

Query: 76  VD 77
            D
Sbjct: 118 GD 119

[Close]

BLAST of Csor.00g216390 vs. ExPASy TrEMBL
Match: A0A1S3BA12 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 2.29e-26
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 16  KTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIID 75
           +TATVAAVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D
Sbjct: 58  RTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRD 117

Query: 76  VD 77
            D
Sbjct: 118 GD 119

[Close]

BLAST of Csor.00g216390 vs. ExPASy TrEMBL
Match: A0A1S3B9C0 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 3.47e-26
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 16  KTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIID 75
           +TATVAAVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D
Sbjct: 58  RTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRD 117

Query: 76  VD 77
            D
Sbjct: 118 GD 119

[Close]

BLAST of Csor.00g216390 vs. ExPASy TrEMBL
Match: A0A6J1EHC7 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111434307 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 3.78e-26
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 18  ATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVD 77
           A+VA +R+AVESVFCGMSMN+ED KISWPHV  HFCLCYKHYKLID+KSRIK+F I D D
Sbjct: 57  ASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGD 116

[Close]

BLAST of Csor.00g216390 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 7.3e-07
Identity = 32/95 (33.68%), Postives = 49/95 (51.58%), Query Frame = 0


Query: 2   LVRFNLKTNFTRTVKTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL 61
           +V+ N         K  +VA ++ AVE VF  +S  +    ISW HV  HFCLCY+  +L
Sbjct: 57  VVKLNGSLFDVEVAKDCSVAELKRAVEQVFT-ISPLEGHGMISWSHVWGHFCLCYRDQRL 116

Query: 62  IDDKSRIKQFEIIDVDK---------KYSPLQDRS 88
           ++DK+ I+   + D D+          +SP+  RS
Sbjct: 117 VNDKTSIRYLGLNDGDQLHFVRHLSIDHSPMNKRS 150

[Close]

BLAST of Csor.00g216390 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.1e-05
Identity = 25/62 (40.32%), Postives = 35/62 (56.45%), Query Frame = 0


Query: 17 TATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDV 76
          +ATV  ++ A+E+ F  +   K   KISW HV  HFCLC+   KLI D   I  + + D 
Sbjct: 38 SATVGDLKVAIETAFSHVP-KKGPSKISWSHVWGHFCLCFGGQKLITDTDCIGNYGMKDG 97

Query: 77 DK 79
          D+
Sbjct: 98 DE 98

The following BLAST results are available for this feature:

BLAST of Csor.00g216390 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g216390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589833.1	1.67e-68	100.00	hypothetical protein SDJN03_15256, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7023503.1	4.06e-39	96.88	hypothetical protein SDJN02_14529 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038880358.1	1.32e-30	87.10	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida]	[more]
XP_011655436.1	4.34e-26	79.03	U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN651...	[more]
XP_008443964.1	4.73e-26	79.03	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]

BLAST of Csor.00g216390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT94	2.10e-26	79.03	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020...	[more]
A0A5A7U4H4	2.29e-26	79.03	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A1S3BA12	2.29e-26	79.03	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A1S3B9C0	3.47e-26	79.03	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 OS=Cucumi...	[more]
A0A6J1EHC7	3.78e-26	78.33	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschat...	[more]

BLAST of Csor.00g216390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80060.1	7.3e-07	33.68	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	3.1e-05	40.32	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 3..87 e-value: 1.2E-13 score: 52.6
None	No IPR available	PANTHER	PTHR14942:SF2	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 15..78
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 15..76 e-value: 3.6E-11 score: 43.0
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 15..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g216390.m01	Csor.00g216390.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex