Csor.00g215930 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g215930
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr10: 2778424 .. 2778915 (-)
RNA-Seq ExpressionCsor.00g215930
SyntenyCsor.00g215930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTTGTGGGTCCATCTGAATTTCATCCCTTGAGCCCAAAACAGACGAGCCCATTCCCTGACAGATTTACGGATGAGGCGAGGCCCCAAATGGAAAGACGAGGAAAATGGGGAAGTATGAAGATCATTATTATGGTCATTATGAATCACCATCATCCGCGCGGGGAATCGTTAAAGGAGACATCCCATCTGCTTTGCACTTGCAGGCCCTTCTTCAACATTTTTATTGTACTTTGCATTAATATCGATCAGCATCTGCAGAAAAATCGAGTCCGAATCTTTCCTCGACTTCAGGTACTCAATACGGAGCTCTCTCTAATGTCTTTGTTTCTGTTTATTCCAATTACTTTGAACCGTTTTCCCATGGTTAATTCGAATGCTCTGAAGCCCCAACCTGTAATTTCCTCAATGATTGACTTCAAGATATCTAATTCTTATTCTGGGTATTGGTTTTCGATCTCTGTGAATTTGTGATTCAGTTTGTTCTAG

mRNA sequence

ATGAATCTTGTGGGTCCATCTGAATTTCATCCCTTGAGCCCAAAACAGACGAGCCCATTCCCTGACAGATTTACGGATGAGGCGAGGCCCCAAATGGAAAGACGAGGAAAATGGGGAAGCCCTTCTTCAACATTTTTATTGTACTTTGCATTAATATCGATCAGCATCTGCAGAAAAATCGAGTCCGAATCTTTCCTCGACTTCAGTTTGTTCTAG

Coding sequence (CDS)

ATGAATCTTGTGGGTCCATCTGAATTTCATCCCTTGAGCCCAAAACAGACGAGCCCATTCCCTGACAGATTTACGGATGAGGCGAGGCCCCAAATGGAAAGACGAGGAAAATGGGGAAGCCCTTCTTCAACATTTTTATTGTACTTTGCATTAATATCGATCAGCATCTGCAGAAAAATCGAGTCCGAATCTTTCCTCGACTTCAGTTTGTTCTAG

Protein sequence

MNLVGPSEFHPLSPKQTSPFPDRFTDEARPQMERRGKWGSPSSTFLLYFALISISICRKIESESFLDFSLF
Homology
[Close]
BLAST of Csor.00g215930 vs. NCBI nr
Match: KAG6589879.1 (hypothetical protein SDJN03_15302, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147 bits (372), Expect = 1.02e-44
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MNLVGPSEFHPLSPKQTSPFPDRFTDEARPQMERRGKWGSPSSTFLLYFALISISICRKI 60
          MNLVGPSEFHPLSPKQTSPFPDRFTDEARPQMERRGKWGSPSSTFLLYFALISISICRKI
Sbjct: 1  MNLVGPSEFHPLSPKQTSPFPDRFTDEARPQMERRGKWGSPSSTFLLYFALISISICRKI 60

Query: 61 ESESFLDFSLF 71
          ESESFLDFSLF
Sbjct: 61 ESESFLDFSLF 71

[Close]
BLAST of Csor.00g215930 vs. NCBI nr
Match: KAG7023550.1 (hypothetical protein SDJN02_14576, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.4 bits (215), Expect = 2.25e-20
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 1  MNLVGPSEFHPLSPKQTSPFPDRFTDEARPQMERRGKWGS 40
          MNLVGPSE HPLSPKQTSPFPDRFTDEARPQMERRGKWGS
Sbjct: 1  MNLVGPSEIHPLSPKQTSPFPDRFTDEARPQMERRGKWGS 40

The following BLAST results are available for this feature:
BLAST of Csor.00g215930 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g215930 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589879.11.02e-44100.00hypothetical protein SDJN03_15302, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7023550.12.25e-2097.50hypothetical protein SDJN02_14576, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Csor.00g215930 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g215930 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g215930.m01Csor.00g215930.m01mRNA