Csor.00g213350 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g213350
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	upstream activation factor subunit UAF30
Location	Csor_Chr03: 254312 .. 256856 (+)
RNA-Seq Expression	Csor.00g213350
Synteny	Csor.00g213350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACTTTGCAAACAAATTCAAGGGCTCCAAGTTCTCCTTCCCCTTGGTGATCCGACCCTAATTCGCTTTAGCCGCTGTATTTTCTGTCAATTCTTTCCAATTTCTAGAGGTTTTTCTTCTCCCTTTTCCCAGGTGCGAATTAAAGCTATCTATTCCATGAACTCGATTTCCTTGCTTCTTGATTTTTTTCATTCTCTGAACTGGGTTTCTTGATTTGAACTCGCGGTACTTCATTTCTCTTGATTTCCCGAGAAATTTCGTGTTCTGTTTCACTCTCTGTGATTGAAAATCTATTGCACATAAGATGTTTGATAAAATTCCCTTGAACCGATGCTCAGATTTTGCTTAGGAGGTTTTGGTTATTGAATGAGCTTATCGCGCCTCAATTTGCAGGACTTTCTGTGTTTTTCATATTTCCAAAGCTTCGTTTCATCTTCCGAGTAAACAGTTTTTATGTGTTTTTCCAGTGGAGGTGGAAGCGAACTGGTTGTGCAGAAAAAATGTTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGTTCTTTTCTTTGTCTAATTTTTATGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGTTTTCGATGCATATTGATTATACTGCTATCAACCTATAACAGAGACTTCCCTTGTTAAATCTACTTTCAAAATAGTTTTCATAGATTCTATATTGTATTCTGGTTTAAGTATGGCTTAAAATGGGCAAGAGGCTAAGGAACGAAACGAAAAGAGTAATCAAAGAGGAGAAGAAAGGTCATGAATCTGAATAATCAGGATGATAAAGAATATCTTGAAATGAAAGTTATGAGAACCTGATGGAGGGTCAAGGTCCTTGGAACGTCCCCAGGTTTGAATAATCAAATACGTGACGGTCCTTGAAACGTTGCATCACGTATACCTTGAAACTAGATTATGAGAACCTGATGTACAGGACATAATCTAGGTTCTCAAGTATACGTGACAGTTCTTGGTCCTTGGAACGTCCCTAGGTTTGAATAATCAAATATGTGACAGTCCTTGGAACGTCACGCCACGTCATGTATACTTTGAAACTAGATTATGAGAACCTGATGTACATGACATAATGTAGGTTCTTAAGTATACGCGACAGTCGTTGGTCCTTGGAACGTCACATATACTTTGAAACTGTATAGAAGAGCTACAAGATAACTCAAGTATTCGAGGTACTTGGAACGTTCCTAGATTTGAATATACACACTCGAGCCTAAACCATCTGAACAGTTCTCTACCTTCATCGTTTACCACTCACTGGATTTGTAACAAATCCCCCCAACAATTCACCCAAACAATATTAACTACTCCCGTGGGATTCTTATCAAAGAAGAGATCCCAAACGAATTGGCTTCTTCGAAAAAAACCTTGTTCGTTGGAAGATCTATCTCGTGCCTGGTACTGTATGGTTCCACTCTAGAAGAACTCCGAATCAATCTCTTGAAGCTCATCCTCTTAAAAGCCCCAAGGGCACCATATTCTAGGAGCTCAAACTATGTGATTGAATAAATCCTCCTTTATCTGTTGTAGGTCGAGGACTCCTTCTCCTTCCCCTTCTTCAAACTCCGATTCATATTGTTCAACCAGAGGGTCACAGAAGGAATGTGATCTTTGATTTATTACCCCAGGGAAGACATAACTAGGTCATAGGCAACATAGAGGAGCTCATAACCCACCACATGAACCCATCTTTCAAGCTTTACTGACTCGATGCTAATACCAACCAACAAAAATTTCGTCTTACTTTACCTATCAAGTTCTATTTAGGCCCACAAAGGACTCCATTAAGCATAAGGAAATAGTATTATAAACTGTAAATGAGTAAGATGGGTGATTTTTTATCTCTCCCAACAAACATTCCTTCTGCTAACCTTTATCCATGCCTCTCAAAATAAGTCTGTTAAGCACATCCACGAGAACCCCAAAAGAGAATGATGCTTAGAATGATGCTTGATTTTACAAACGAGGAATACATCTCTATTGGTACAAGACCTTTTGGGGGAAACCAAAAGCAAAGCCGCAAAGCCGCGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTAAAGAGTCGTGGTTCCTAACATTTGCATTACACGTTATTATTGTTCCATGGTCATGTATTATGATTTTGGGAAGCTAGAAGTACTTGAAACTTGAATGAAGTAGCACTTCTTTTTCTAAATGTTAAAAATATGTTTCTTGGTATGTATCTTTCTTGTCCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGTCCAAGATTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCAAAGAACCCCAAGTGA

mRNA sequence

ATGCACTTTGCAAACAAATTCAAGGGCTCCAAAGGTTTTTCTTCTCCCTTTTCCCAGTGGAGGTGGAAGCGAACTGGTTGTGCAGAAAAAATGTTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGTCCAAGATTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCAAAGAACCCCAAGTGA

Coding sequence (CDS)

ATGCACTTTGCAAACAAATTCAAGGGCTCCAAAGGTTTTTCTTCTCCCTTTTCCCAGTGGAGGTGGAAGCGAACTGGTTGTGCAGAAAAAATGTTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGTCCAAGATTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCAAAGAACCCCAAGTGA

Protein sequence

MHFANKFKGSKGFSSPFSQWRWKRTGCAEKMLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK

Homology

[Close]

BLAST of Csor.00g213350 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-07
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 54  VNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSI 106
           + L   L EF+G  Q+SR    K +W YIK ++LQDP +K  ++CD+KLKS+
Sbjct: 121 MKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSV 172

[Close]

BLAST of Csor.00g213350 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-07
Identity = 27/77 (35.06%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 54  VNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIE 113
           V L  +L   +G+ +++R    + +W+YIK +NLQ+P NK  ++CDEKL+ ++LGKS   
Sbjct: 124 VTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLE-LILGKS-TN 183

Query: 114 LAELPALIKLHFPKNPK 131
           + E+  ++  H  +  K
Sbjct: 184 MFEMHKILASHMTEPKK 198

[Close]

BLAST of Csor.00g213350 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06
Identity = 31/102 (30.39%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 23  KRTGCAEKMLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYI 82
           KR G +E    ++ K    D+P   +  +  V L + L++F+G  ++ R    K +W YI
Sbjct: 95  KRKGKSESKSKRKKKK--NDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYI 154

Query: 83  KTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPALIKLH 125
           K ++LQ+P ++  ++CDEK++ I  GK K+ +  +  L+  H
Sbjct: 155 KEHDLQNPKDRREILCDEKMEPI-FGK-KMTMFSMNKLLTKH 192

[Close]

BLAST of Csor.00g213350 vs. NCBI nr
Match: KAG6603170.1 (hypothetical protein SDJN03_03779, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271 bits (692), Expect = 1.12e-91
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MHFANKFKGSKGFSSPFSQWRWKRTGCAEKMLPQRMKTAITDNPKKLANLIDLVNLPSTL 60
           MHFANKFKGSKGFSSPFSQWRWKRTGCAEKMLPQRMKTAITDNPKKLANLIDLVNLPSTL
Sbjct: 1   MHFANKFKGSKGFSSPFSQWRWKRTGCAEKMLPQRMKTAITDNPKKLANLIDLVNLPSTL 60

Query: 61  REFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPAL 120
           REFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPAL
Sbjct: 61  REFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPAL 120

Query: 121 IKLHFPKNPK 130
           IKLHFPKNPK
Sbjct: 121 IKLHFPKNPK 130

[Close]

BLAST of Csor.00g213350 vs. NCBI nr
Match: XP_022967913.1 (protein TRI1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 248 bits (632), Expect = 3.69e-82
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 3   FANKFKGSKGFSSPFSQWRWKRTGCAEKMLPQRMKTAITDNPKKLANLIDLVNLPSTLRE 62
           F   F  S+GFSSPFSQWRWKRT CAEKMLPQRMKTAITDNPKKLANLIDLVNLPSTLRE
Sbjct: 28  FCQFFPISRGFSSPFSQWRWKRTSCAEKMLPQRMKTAITDNPKKLANLIDLVNLPSTLRE 87

Query: 63  FVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPALIK 122
           FVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKL+SILLGKSK+ELAELPALIK
Sbjct: 88  FVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLRSILLGKSKVELAELPALIK 147

Query: 123 LHFPKNPK 130
           LHFPKNPK
Sbjct: 148 LHFPKNPK 155

[Close]

BLAST of Csor.00g213350 vs. NCBI nr
Match: XP_022928748.1 (upstream activation factor subunit UAF30 [Cucurbita moschata] >XP_022928749.1 upstream activation factor subunit UAF30 [Cucurbita moschata])

HSP 1 Score: 204 bits (520), Expect = 7.25e-66
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 31  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 90
           MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 91  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 130
           TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 100

[Close]

BLAST of Csor.00g213350 vs. NCBI nr
Match: XP_022967914.1 (upstream activation factor subunit UAF30 isoform X2 [Cucurbita maxima] >XP_022967915.1 upstream activation factor subunit UAF30 isoform X2 [Cucurbita maxima])

HSP 1 Score: 203 bits (516), Expect = 2.95e-65
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 31  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 90
           MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 91  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 130
           TNKNVVICDEKL+SILLGKSK+ELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 100

[Close]

BLAST of Csor.00g213350 vs. NCBI nr
Match: XP_023545091.1 (upstream activation factor subunit UAF30 [Cucurbita pepo subsp. pepo] >XP_023545092.1 upstream activation factor subunit UAF30 [Cucurbita pepo subsp. pepo] >XP_023545093.1 upstream activation factor subunit UAF30 [Cucurbita pepo subsp. pepo] >XP_023545094.1 upstream activation factor subunit UAF30 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202 bits (515), Expect = 4.20e-65
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 31  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 90
           MLPQRMKTAITDNPKKLA+LIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 91  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 130
           TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 100

[Close]

BLAST of Csor.00g213350 vs. ExPASy TrEMBL
Match: A0A6J1HWJ0 (protein TRI1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467287 PE=4 SV=1)

HSP 1 Score: 248 bits (632), Expect = 1.79e-82
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 3   FANKFKGSKGFSSPFSQWRWKRTGCAEKMLPQRMKTAITDNPKKLANLIDLVNLPSTLRE 62
           F   F  S+GFSSPFSQWRWKRT CAEKMLPQRMKTAITDNPKKLANLIDLVNLPSTLRE
Sbjct: 28  FCQFFPISRGFSSPFSQWRWKRTSCAEKMLPQRMKTAITDNPKKLANLIDLVNLPSTLRE 87

Query: 63  FVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPALIK 122
           FVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKL+SILLGKSK+ELAELPALIK
Sbjct: 88  FVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLRSILLGKSKVELAELPALIK 147

Query: 123 LHFPKNPK 130
           LHFPKNPK
Sbjct: 148 LHFPKNPK 155

[Close]

BLAST of Csor.00g213350 vs. ExPASy TrEMBL
Match: A0A6J1ELR1 (upstream activation factor subunit UAF30 OS=Cucurbita moschata OX=3662 GN=LOC111435564 PE=4 SV=1)

HSP 1 Score: 204 bits (520), Expect = 3.51e-66
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 31  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 90
           MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 91  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 130
           TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 100

[Close]

BLAST of Csor.00g213350 vs. ExPASy TrEMBL
Match: A0A6J1HY33 (upstream activation factor subunit UAF30 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467287 PE=4 SV=1)

HSP 1 Score: 203 bits (516), Expect = 1.43e-65
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 31  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 90
           MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 91  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 130
           TNKNVVICDEKL+SILLGKSK+ELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 100

[Close]

BLAST of Csor.00g213350 vs. ExPASy TrEMBL
Match: A0A1S3BL41 (upstream activation factor subunit spp27 OS=Cucumis melo OX=3656 GN=LOC103491221 PE=4 SV=1)

HSP 1 Score: 187 bits (476), Expect = 1.80e-59
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 31  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 90
           M  +RMK A+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 91  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 130
           TNKNVV+CDEKLKSILLGK K+ELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]

BLAST of Csor.00g213350 vs. ExPASy TrEMBL
Match: A0A151SBL4 (Upstream activation factor subunit UAF30 OS=Cajanus cajan OX=3821 GN=KK1_025905 PE=4 SV=1)

HSP 1 Score: 186 bits (471), Expect = 1.04e-58
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 31  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 90
           MLPQRMK AITDNPKKLANLIDL+NLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 91  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 130
            NKNVV CDEKLKSILLGK +++LAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

[Close]

BLAST of Csor.00g213350 vs. TAIR 10
Match: AT4G26810.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 175.6 bits (444), Expect = 2.5e-44
Identity = 85/100 (85.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 31  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 90
           MLPQR+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIKTNNLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 91  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 131
            NKNVVICDEKLKSILLGK ++EL +LP+LIKLHFPK  K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]

BLAST of Csor.00g213350 vs. TAIR 10
Match: AT4G26810.2 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 175.6 bits (444), Expect = 2.5e-44
Identity = 85/100 (85.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 31  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 90
           MLPQR+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIKTNNLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 91  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 131
            NKNVVICDEKLKSILLGK ++EL +LP+LIKLHFPK  K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]

BLAST of Csor.00g213350 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-15
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 50  LIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGK 109
           ++ +V +   L  F+G++++SR    K +W YIK NNLQ+P NK  ++CDE+LK+I  GK
Sbjct: 30  ILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGK 89

Query: 110 SKIELAELPALIKLHFPKN 129
             +   E+  L+  HFPK+
Sbjct: 90  DTVGFLEISKLLSQHFPKS 108

[Close]

BLAST of Csor.00g213350 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-13
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 60  LREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPA 119
           L  F G+ +++R    K VW Y+K +NLQ+P NK  + CD+KLK+I  GK K+ + E+  
Sbjct: 43  LASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMK 102

Query: 120 LIKLHFPKN 129
           L+  HFPK+
Sbjct: 103 LLSPHFPKS 111

[Close]

BLAST of Csor.00g213350 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 38/122 (31.15%), Postives = 60/122 (49.18%), Query Frame = 0


Query: 10  SKGFSSPFSQWRWKRTGCAEKMLPQRMKTAITDNPKK----LANLIDLVNLPSTLREFVG 69
           S+  SS  S    K+     K   +    A +D+P K       +  +  +   L +F+G
Sbjct: 20  SRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTPRSTGIFKVTPVSPVLAQFLG 79

Query: 70  QSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPALIKLHF 128
             + SR    K +W+YIK+++LQ+P +K  + CDE LK I  GK K+   E+  L+  HF
Sbjct: 80  TGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGFLEISKLLSPHF 139

The following BLAST results are available for this feature:

BLAST of Csor.00g213350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74503	1.4e-07	46.15	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q08747	2.4e-07	35.06	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q05024	1.6e-06	30.39	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]

BLAST of Csor.00g213350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603170.1	1.12e-91	100.00	hypothetical protein SDJN03_03779, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022967913.1	3.69e-82	92.97	protein TRI1 isoform X1 [Cucurbita maxima]	[more]
XP_022928748.1	7.25e-66	100.00	upstream activation factor subunit UAF30 [Cucurbita moschata] >XP_022928749.1 up...	[more]
XP_022967914.1	2.95e-65	98.00	upstream activation factor subunit UAF30 isoform X2 [Cucurbita maxima] >XP_02296...	[more]
XP_023545091.1	4.20e-65	99.00	upstream activation factor subunit UAF30 [Cucurbita pepo subsp. pepo] >XP_023545...	[more]

BLAST of Csor.00g213350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HWJ0	1.79e-82	92.97	protein TRI1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467287 PE=4 SV=1	[more]
A0A6J1ELR1	3.51e-66	100.00	upstream activation factor subunit UAF30 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1HY33	1.43e-65	98.00	upstream activation factor subunit UAF30 isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A1S3BL41	1.80e-59	91.00	upstream activation factor subunit spp27 OS=Cucumis melo OX=3656 GN=LOC103491221...	[more]
A0A151SBL4	1.04e-58	89.00	Upstream activation factor subunit UAF30 OS=Cajanus cajan OX=3821 GN=KK1_025905 ...	[more]

BLAST of Csor.00g213350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26810.1	2.5e-44	85.00	SWIB/MDM2 domain superfamily protein	[more]
AT4G26810.2	2.5e-44	85.00	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	5.5e-15	40.51	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	6.7e-13	43.48	SWIB/MDM2 domain superfamily protein	[more]
AT3G03590.1	1.7e-11	31.15	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 50..130 e-value: 2.3E-12 score: 57.1
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 54..125 e-value: 6.2E-23 score: 80.5
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 49..127 score: 19.460289
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 46..130 e-value: 1.6E-21 score: 78.0
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 43..128
None	No IPR available	PANTHER	PTHR13844:SF45	OS09G0133000 PROTEIN	coord: 11..130
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 11..130
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 54..125 e-value: 1.29736E-22 score: 82.2061

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g213350.m01	Csor.00g213350.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus