Csor.00g212650 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g212650
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr17: 5863155 .. 5864181 (+)
RNA-Seq ExpressionCsor.00g212650
SyntenyCsor.00g212650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGTATTTAAGAGTTTAGACCCTGGTACGTCCAATGTGGACCTCGGGAATGAGGAGCAGCCTGTAGAAGGAACTGCTCTAGCAGAGGCAAATCTGGAGCCTATTGCTCTGTCGGCATCGAGAGATCAGCCGACTGTTGCGATTACTTTGGAAACACTGCAATCATTGATTGAGAGTCGAGTAGATCAGGCGGTGCAGAGCCATGTGGATCAGGCGGTACAGGCAGCTCTTACTGGTCTTAGAAGCCAGGCGGCTCCGACAACACCTATATCTAGCCAGGCGACTACAGTGTCTGAAGCACCAGGAGTAGGTGTTCAGGCAGTAATACCTCCAACAAGTTCGACGGAGCTACCTGGTACAGCGGGTAGTAACTTAAGGGCGACGATGTATGACGGAGGAAAATGAGTATATACGAGATTTTATGAAACTTACCTCGCCAACTTTTGGAGGAAAGGGGACTGATCCTGAGGTGGCTGAATGGTGGTTAGAATGTATTGAAACAAAGTTTACATTCTTTAACTGCCCGGAGAATCATAAGGTGCTGTGTGCTACATATTTGTTGGAAGGACCCGCCTATTTTTGGTGGAAGTCAAAGAAGTCGAAGATGGAGGCTGGTGGAGCCCCAATCGCATGGGCGGCGTTCAAACATGAGTTTTGTGAGAAATACTATCCTGCTCTAGTGAGATTACGAAACTGAAAGACCTTTATGCAACTGGAACAGGGTAATATGTCCGTAGAGGAGTATGAGGCGGAATTCACTCGATTATCTAGATTTGTTCCTCTTATGGTTGCTATTGAGGAAGAGAAGACGAATCCCTTTATCCAGGGTTTGAGGCAAGAGATACAGGGATCCATGTCTGCCCATGCTTCTCAAGATTTCATTACCACTTATAATGCTGCGGTGAAATTAGATGCTACCATCCCGAGGAGTAATCAGGGTTCCAGCAGCCAGATGCGACCAAGTGGTAAACGAAAATTTACTCAAATATCCTCGGAATCGCAACATCAGACAGTACCGCTATGA

mRNA sequence

ATGGTAGTATTTAAGAGTTTAGACCCTGGTACGTCCAATGTGGACCTCGGGAATGAGGAGCAGCCTGTAGAAGGAACTGCTCTAGCAGAGGCAAATCTGGAGCCTATTGCTCTGTCGGCATCGAGAGATCAGCCGACTGTTGCGATTACTTTGGAAACACTGCAATCATTGATTGAGAGTCGAGTAGATCAGGCGGTGCAGAGCCATGTGGATCAGGCGGTACAGGCAGCTCTTACTGGTCTTAGAAGCCAGGCGGCTCCGACAACACCTATATCTAGCCAGGCGACTACAGTGTCTGAAGCACCAGGAGTAGGTGTTCAGGCAGTAATACCTCCAACAAGTTCGACGGAGCTACCTGATTTCATTACCACTTATAATGCTGCGGTGAAATTAGATGCTACCATCCCGAGGAGTAATCAGGGTTCCAGCAGCCAGATGCGACCAAGTGGTAAACGAAAATTTACTCAAATATCCTCGGAATCGCAACATCAGACAGTACCGCTATGA

Coding sequence (CDS)

ATGGTAGTATTTAAGAGTTTAGACCCTGGTACGTCCAATGTGGACCTCGGGAATGAGGAGCAGCCTGTAGAAGGAACTGCTCTAGCAGAGGCAAATCTGGAGCCTATTGCTCTGTCGGCATCGAGAGATCAGCCGACTGTTGCGATTACTTTGGAAACACTGCAATCATTGATTGAGAGTCGAGTAGATCAGGCGGTGCAGAGCCATGTGGATCAGGCGGTACAGGCAGCTCTTACTGGTCTTAGAAGCCAGGCGGCTCCGACAACACCTATATCTAGCCAGGCGACTACAGTGTCTGAAGCACCAGGAGTAGGTGTTCAGGCAGTAATACCTCCAACAAGTTCGACGGAGCTACCTGATTTCATTACCACTTATAATGCTGCGGTGAAATTAGATGCTACCATCCCGAGGAGTAATCAGGGTTCCAGCAGCCAGATGCGACCAAGTGGTAAACGAAAATTTACTCAAATATCCTCGGAATCGCAACATCAGACAGTACCGCTATGA

Protein sequence

MVVFKSLDPGTSNVDLGNEEQPVEGTALAEANLEPIALSASRDQPTVAITLETLQSLIESRVDQAVQSHVDQAVQAALTGLRSQAAPTTPISSQATTVSEAPGVGVQAVIPPTSSTELPDFITTYNAAVKLDATIPRSNQGSSSQMRPSGKRKFTQISSESQHQTVPL
Homology
BLAST of Csor.00g212650 vs. NCBI nr
Match: KAG6575338.1 (hypothetical protein SDJN03_25977, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 312 bits (800), Expect = 6.62e-107
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0

Query: 1   MVVFKSLDPGTSNVDLGNEEQPVEGTALAEANLEPIALSASRDQPTVAITLETLQSLIES 60
           MVVFKSLDPGTSNVDLGNEEQPVEGTALAEANLEPIALSASRDQPTVAITLETLQSLIES
Sbjct: 1   MVVFKSLDPGTSNVDLGNEEQPVEGTALAEANLEPIALSASRDQPTVAITLETLQSLIES 60

Query: 61  RVDQAVQSHVDQAVQAALTGLRSQAAPTTPISSQATTVSEAPGVGVQAVIPPTSSTELPD 120
           RVDQAVQSHVDQAVQAALTGLRSQAAPTTPISSQATTVSEAPGVGVQAVIPPTSSTELPD
Sbjct: 61  RVDQAVQSHVDQAVQAALTGLRSQAAPTTPISSQATTVSEAPGVGVQAVIPPTSSTELPD 120

Query: 121 FITTYNAAVKLDATIPRSNQGSSSQMRPSGKRKFTQISSESQHQTVPL 168
           FITTYNAAVKLDATIPRSNQGSSSQMRPSGKRKFTQISSESQHQTVPL
Sbjct: 121 FITTYNAAVKLDATIPRSNQGSSSQMRPSGKRKFTQISSESQHQTVPL 168

BLAST of Csor.00g212650 vs. NCBI nr
Match: KAG6571276.1 (hypothetical protein SDJN03_30191, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219 bits (558), Expect = 5.96e-70
Identity = 119/147 (80.95%), Postives = 125/147 (85.03%), Query Frame = 0

Query: 1   MVVFKSLDPGTSNVDLGNEEQPVEGTALAEANLEPIALSASRDQPTVAITLETLQSLIES 60
           MVVFK+LDPGTSNVDLGNE QPVEGTA AEA  EP A SASRDQPTV ITLE LQSLIES
Sbjct: 6   MVVFKNLDPGTSNVDLGNEGQPVEGTAPAEAVPEPAAQSASRDQPTVVITLEALQSLIES 65

Query: 61  RVDQAVQSHVDQAVQAALTGLRSQAAPTTPISSQATTVSEAPGVGVQAVIPPTSSTELPD 120
           RVDQA+QS VDQAVQAAL G  SQAAPT P+S Q T VSEAPGVGVQ VIPPT  TELPD
Sbjct: 66  RVDQAMQSRVDQAVQAALAGFGSQAAPTAPVSGQTTLVSEAPGVGVQTVIPPTQLTELPD 125

Query: 121 FITTYNAAVKLDATIPRSNQGSSSQMR 147
           F+T YNAAVKLDA+ PR+NQGSSSQ R
Sbjct: 126 FVTAYNAAVKLDASTPRNNQGSSSQTR 152

BLAST of Csor.00g212650 vs. NCBI nr
Match: KAG6590525.1 (hypothetical protein SDJN03_15948, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215 bits (547), Expect = 2.81e-68
Identity = 117/147 (79.59%), Postives = 125/147 (85.03%), Query Frame = 0

Query: 1   MVVFKSLDPGTSNVDLGNEEQPVEGTALAEANLEPIALSASRDQPTVAITLETLQSLIES 60
           MVVFK+LDPGTSNVDLGNE QPVEGTA AEA  EP A SASRDQPTV ITLE LQSLIES
Sbjct: 6   MVVFKNLDPGTSNVDLGNEGQPVEGTAPAEAVPEPAAQSASRDQPTVVITLEALQSLIES 65

Query: 61  RVDQAVQSHVDQAVQAALTGLRSQAAPTTPISSQATTVSEAPGVGVQAVIPPTSSTELPD 120
           RVDQ++QS VDQAVQAAL GL SQAAP  P+S Q T VSEAPGVGVQ VIPPT  TELPD
Sbjct: 66  RVDQSMQSWVDQAVQAALAGLGSQAAPAAPVSGQMTLVSEAPGVGVQTVIPPTRLTELPD 125

Query: 121 FITTYNAAVKLDATIPRSNQGSSSQMR 147
           F+T YNAAVKLDA+ PR+NQGS+SQ R
Sbjct: 126 FVTAYNAAVKLDASTPRNNQGSNSQTR 152

BLAST of Csor.00g212650 vs. NCBI nr
Match: KAG6571732.1 (hypothetical protein SDJN03_28460, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204 bits (519), Expect = 5.09e-64
Identity = 114/147 (77.55%), Postives = 120/147 (81.63%), Query Frame = 0

Query: 1   MVVFKSLDPGTSNVDLGNEEQPVEGTALAEANLEPIALSASRDQPTVAITLETLQSLIES 60
           M VFK+LDPGTSNVDLGNE QPVE TA AEA  EP A SASRDQPTV ITLE LQSLIES
Sbjct: 6   MDVFKNLDPGTSNVDLGNEGQPVEETAPAEAVPEPAAQSASRDQPTVVITLEALQSLIES 65

Query: 61  RVDQAVQSHVDQAVQAALTGLRSQAAPTTPISSQATTVSEAPGVGVQAVIPPTSSTELPD 120
           RVDQA+QS VDQAVQAAL GL SQAAPT P+S Q T VSE   VGVQ V PPT  TELPD
Sbjct: 66  RVDQAMQSRVDQAVQAALAGLGSQAAPTAPVSGQTTLVSETLEVGVQTVTPPTRLTELPD 125

Query: 121 FITTYNAAVKLDATIPRSNQGSSSQMR 147
           F+T YNAAVKLDA+ PR+NQGSSSQ R
Sbjct: 126 FVTAYNAAVKLDASTPRNNQGSSSQTR 152

BLAST of Csor.00g212650 vs. NCBI nr
Match: KAG6590425.1 (hypothetical protein SDJN03_15848, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204 bits (518), Expect = 7.23e-64
Identity = 113/147 (76.87%), Postives = 120/147 (81.63%), Query Frame = 0

Query: 1   MVVFKSLDPGTSNVDLGNEEQPVEGTALAEANLEPIALSASRDQPTVAITLETLQSLIES 60
           M VFK+LDPGTSNVDLGNE QPVE TA AEA  EP A SASRDQPT+ ITLE LQSLIES
Sbjct: 6   MDVFKNLDPGTSNVDLGNEGQPVEETAPAEAVPEPAAQSASRDQPTIVITLEALQSLIES 65

Query: 61  RVDQAVQSHVDQAVQAALTGLRSQAAPTTPISSQATTVSEAPGVGVQAVIPPTSSTELPD 120
           RVDQA+QS VDQAVQAAL GL SQAAPT  +S Q T VSE P VGVQ V PPT  TELPD
Sbjct: 66  RVDQAMQSRVDQAVQAALAGLGSQAAPTALVSGQTTLVSETPEVGVQTVTPPTRLTELPD 125

Query: 121 FITTYNAAVKLDATIPRSNQGSSSQMR 147
           F+T YNAAVKLDA+ PR+NQGSSSQ R
Sbjct: 126 FVTAYNAAVKLDASTPRNNQGSSSQTR 152

BLAST of Csor.00g212650 vs. ExPASy TrEMBL
Match: A0A6J1HHR1 (uncharacterized protein LOC111463090 OS=Cucurbita moschata OX=3662 GN=LOC111463090 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.94e-13
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0

Query: 120 DFITTYNAAVKLDATIPRSNQGSSSQMRPSGKRKFTQISSESQHQTVP 167
           DF+T YNAAVKLDA+ PR+NQGSSSQ+RPSGKRKF QIS+ SQ QTVP
Sbjct: 91  DFVTAYNAAVKLDASTPRNNQGSSSQVRPSGKRKFLQISTGSQQQTVP 138

BLAST of Csor.00g212650 vs. ExPASy TrEMBL
Match: A0A6J1EQX1 (uncharacterized protein LOC111436980 OS=Cucurbita moschata OX=3662 GN=LOC111436980 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.26e-13
Identity = 41/54 (75.93%), Postives = 43/54 (79.63%), Query Frame = 0

Query: 67  QSHVDQAVQAALTGLRSQAAPTTPISSQATTVSEAPGVGVQAVIPPTSSTELPD 120
           QS VDQAVQAAL GL SQAAPT P+  Q T VSEAPGVGVQ VIPPT  TELP+
Sbjct: 2   QSRVDQAVQAALAGLGSQAAPTAPVLGQTTLVSEAPGVGVQTVIPPTRLTELPE 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6575338.16.62e-107100.00hypothetical protein SDJN03_25977, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571276.15.96e-7080.95hypothetical protein SDJN03_30191, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590525.12.81e-6879.59hypothetical protein SDJN03_15948, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571732.15.09e-6477.55hypothetical protein SDJN03_28460, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590425.17.23e-6476.87hypothetical protein SDJN03_15848, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6J1HHR11.94e-1379.17uncharacterized protein LOC111463090 OS=Cucurbita moschata OX=3662 GN=LOC1114630... [more]
A0A6J1EQX15.26e-1375.93uncharacterized protein LOC111436980 OS=Cucurbita moschata OX=3662 GN=LOC1114369... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g212650.m01Csor.00g212650.m01mRNA