Csor.00g211780 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g211780
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionCLAVATA3/ESR-RELATED
LocationCsor_Chr11: 858048 .. 858326 (-)
RNA-Seq ExpressionCsor.00g211780
SyntenyCsor.00g211780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTAGCACCAAAGCTTTGGTCTTTGCCTTACTTCTTGCTGGGGTTTCCTTGTGTGTTCAACCCCAAACAGCATCTGGGCTCACCACCATTGATCTTGCTCTCAAATGGGTGGCCTTCAAATCGCCAATTACCAACACCCACAACCCTGATTCTGTGAAGAAATTGAAGATGAAGAACATGAGCCTGGCTCCTTCACCAGCCATGCATTTTGACCCCAATCAGTCCAACAAAAGAGGAGTCAAGAAAGGATCCGACCCCATTCACAACAGATCCTAG

mRNA sequence

ATGCTTAGCACCAAAGCTTTGGTCTTTGCCTTACTTCTTGCTGGGGTTTCCTTGTGTGTTCAACCCCAAACAGCATCTGGGCTCACCACCATTGATCTTGCTCTCAAATGGGTGGCCTTCAAATCGCCAATTACCAACACCCACAACCCTGATTCTGTGAAGAAATTGAAGATGAAGAACATGAGCCTGGCTCCTTCACCAGCCATGCATTTTGACCCCAATCAGTCCAACAAAAGAGGAGTCAAGAAAGGATCCGACCCCATTCACAACAGATCCTAG

Coding sequence (CDS)

ATGCTTAGCACCAAAGCTTTGGTCTTTGCCTTACTTCTTGCTGGGGTTTCCTTGTGTGTTCAACCCCAAACAGCATCTGGGCTCACCACCATTGATCTTGCTCTCAAATGGGTGGCCTTCAAATCGCCAATTACCAACACCCACAACCCTGATTCTGTGAAGAAATTGAAGATGAAGAACATGAGCCTGGCTCCTTCACCAGCCATGCATTTTGACCCCAATCAGTCCAACAAAAGAGGAGTCAAGAAAGGATCCGACCCCATTCACAACAGATCCTAG

Protein sequence

MLSTKALVFALLLAGVSLCVQPQTASGLTTIDLALKWVAFKSPITNTHNPDSVKKLKMKNMSLAPSPAMHFDPNQSNKRGVKKGSDPIHNRS
Homology
BLAST of Csor.00g211780 vs. NCBI nr
Match: KAG6587538.1 (hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182 bits (463), Expect = 5.90e-58
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 1  MLSTKALVFALLLAGVSLCVQPQTASGLTTIDLALKWVAFKSPITNTHNPDSVKKLKMKN 60
          MLSTKALVFALLLAGVSLCVQPQTASGLTTIDLALKWVAFKSPITNTHNPDSVKKLKMKN
Sbjct: 1  MLSTKALVFALLLAGVSLCVQPQTASGLTTIDLALKWVAFKSPITNTHNPDSVKKLKMKN 60

Query: 61 MSLAPSPAMHFDPNQSNKRGVKKGSDPIHNRS 92
          MSLAPSPAMHFDPNQSNKRGVKKGSDPIHNRS
Sbjct: 61 MSLAPSPAMHFDPNQSNKRGVKKGSDPIHNRS 92

BLAST of Csor.00g211780 vs. NCBI nr
Match: KAG6589506.1 (hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122 bits (306), Expect = 6.03e-34
Identity = 66/89 (74.16%), Postives = 72/89 (80.90%), Query Frame = 0

Query: 5  KALVFALLLAG-VSLCVQPQTASGLTTIDLALKWVAFKSPITNTHNPD-SVKKLKMKNMS 64
          K L F  LLAG V   +QPQTASGL TID+ALKWVAFKSP  +TH  D S KKL MKNM+
Sbjct: 8  KVLFFLFLLAGFVFSLLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSEKKLNMKNMN 67

Query: 65 LAPSPAMHFDPNQSNKRGVKKGSDPIHNR 91
          +APSPAM+FDPNQSNKR VKKGSDPIHNR
Sbjct: 68 VAPSPAMNFDPNQSNKRRVKKGSDPIHNR 96

BLAST of Csor.00g211780 vs. NCBI nr
Match: KGN63668.1 (hypothetical protein Csa_014085 [Cucumis sativus])

HSP 1 Score: 103 bits (257), Expect = 1.80e-26
Identity = 64/96 (66.67%), Postives = 72/96 (75.00%), Query Frame = 0

Query: 3  STKALVFALLLAGVSLCV---QPQT-ASGLTTIDLALKWVAFKSPIT-NTHNPDSVKKLK 62
          S K L F  ++A   LCV   QPQT A+GL+TID ALKWVAFKS  T NTH  DS  +  
Sbjct: 6  SRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDE-- 65

Query: 63 MKNMSLA-PSPAMHFDPNQSNKRGVKKGSDPIHNRS 92
           KN++LA PSPAM+FDPNQSNKRGVKKGSDPIHNRS
Sbjct: 66 -KNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98

BLAST of Csor.00g211780 vs. NCBI nr
Match: KDO55565.1 (hypothetical protein CISIN_1g039594mg [Citrus sinensis])

HSP 1 Score: 77.0 bits (188), Expect = 4.94e-16
Identity = 47/86 (54.65%), Postives = 58/86 (67.44%), Query Frame = 0

Query: 9  FALLLAGVSLCVQPQTASGLTTIDLALKWVAFKSP-ITNTHNPDSV--KKLKMKNMSLAP 68
          F LL+    L +QPQ  SGL +IDL L+W     P + NT    +V  K L+M N SLAP
Sbjct: 9  FILLVCIGFLSLQPQNVSGLRSIDLVLRWDKEVLPAVRNTRILKAVPLKDLQM-NPSLAP 68

Query: 69 SPAMHFDPNQSNKRGVKKGSDPIHNR 91
          +P++ FDPNQSNKR V+KGSDPIHNR
Sbjct: 69 APSLMFDPNQSNKRKVRKGSDPIHNR 93

BLAST of Csor.00g211780 vs. NCBI nr
Match: OMP04794.1 (hypothetical protein COLO4_09292 [Corchorus olitorius])

HSP 1 Score: 77.0 bits (188), Expect = 5.21e-16
Identity = 46/87 (52.87%), Postives = 54/87 (62.07%), Query Frame = 0

Query: 9  FALLLAGVSLCV-QPQTASGLTTIDLALKWVAFKSPITNTHN---PDSVKKLKMKNMSLA 68
          F LLLA +SL V QP+  SGL +IDLAL+W     P          D+         SLA
Sbjct: 9  FLLLLACISLLVLQPEMVSGLRSIDLALRWDKGLLPFVRNSRFLKADAAVDSLQTRPSLA 68

Query: 69 PSPAMHFDPNQSNKRGVKKGSDPIHNR 91
          PSP+M FDPNQS+KR V+KGSDPIHNR
Sbjct: 69 PSPSMMFDPNQSDKRRVRKGSDPIHNR 95

BLAST of Csor.00g211780 vs. ExPASy TrEMBL
Match: A0A0A0LPD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 8.70e-27
Identity = 64/96 (66.67%), Postives = 72/96 (75.00%), Query Frame = 0

Query: 3  STKALVFALLLAGVSLCV---QPQT-ASGLTTIDLALKWVAFKSPIT-NTHNPDSVKKLK 62
          S K L F  ++A   LCV   QPQT A+GL+TID ALKWVAFKS  T NTH  DS  +  
Sbjct: 6  SRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDE-- 65

Query: 63 MKNMSLA-PSPAMHFDPNQSNKRGVKKGSDPIHNRS 92
           KN++LA PSPAM+FDPNQSNKRGVKKGSDPIHNRS
Sbjct: 66 -KNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98

BLAST of Csor.00g211780 vs. ExPASy TrEMBL
Match: A0A067ENV6 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039594mg PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.39e-16
Identity = 47/86 (54.65%), Postives = 58/86 (67.44%), Query Frame = 0

Query: 9  FALLLAGVSLCVQPQTASGLTTIDLALKWVAFKSP-ITNTHNPDSV--KKLKMKNMSLAP 68
          F LL+    L +QPQ  SGL +IDL L+W     P + NT    +V  K L+M N SLAP
Sbjct: 9  FILLVCIGFLSLQPQNVSGLRSIDLVLRWDKEVLPAVRNTRILKAVPLKDLQM-NPSLAP 68

Query: 69 SPAMHFDPNQSNKRGVKKGSDPIHNR 91
          +P++ FDPNQSNKR V+KGSDPIHNR
Sbjct: 69 APSLMFDPNQSNKRKVRKGSDPIHNR 93

BLAST of Csor.00g211780 vs. ExPASy TrEMBL
Match: A0A1R3KCL9 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_09292 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.52e-16
Identity = 46/87 (52.87%), Postives = 54/87 (62.07%), Query Frame = 0

Query: 9  FALLLAGVSLCV-QPQTASGLTTIDLALKWVAFKSPITNTHN---PDSVKKLKMKNMSLA 68
          F LLLA +SL V QP+  SGL +IDLAL+W     P          D+         SLA
Sbjct: 9  FLLLLACISLLVLQPEMVSGLRSIDLALRWDKGLLPFVRNSRFLKADAAVDSLQTRPSLA 68

Query: 69 PSPAMHFDPNQSNKRGVKKGSDPIHNR 91
          PSP+M FDPNQS+KR V+KGSDPIHNR
Sbjct: 69 PSPSMMFDPNQSDKRRVRKGSDPIHNR 95

BLAST of Csor.00g211780 vs. ExPASy TrEMBL
Match: A0A314YU30 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_16404 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.67e-16
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 0

Query: 18 LCVQPQTASGLTTIDLALKW-VAFKSPITNTHNPDSV--KKLKMKNMSLAPSPAMHFDPN 77
          L +QP+  SGL ++DLAL+W     S + + H  ++V  + L+ K +SLAP+P+M FDPN
Sbjct: 18 LALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVEAVAVEDLQAK-LSLAPAPSMTFDPN 77

Query: 78 QSNKRGVKKGSDPIHNRS 92
          QSNKR V+KGSDPIHNRS
Sbjct: 78 QSNKRKVRKGSDPIHNRS 94

BLAST of Csor.00g211780 vs. ExPASy TrEMBL
Match: V4VM13 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023845mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.67e-16
Identity = 46/86 (53.49%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 9  FALLLAGVSLCVQPQTASGLTTIDLALKWVAFKSP-ITNTHNPDSV--KKLKMKNMSLAP 68
          F LL+    L +QPQ  SGL +ID  L+W     P + NT    +V  K L+M N SLAP
Sbjct: 9  FILLVCIGFLSLQPQNVSGLRSIDFVLRWDKEVLPAVRNTRILKAVPLKDLQM-NPSLAP 68

Query: 69 SPAMHFDPNQSNKRGVKKGSDPIHNR 91
          +P++ FDPNQSNKR V+KGSDPIHNR
Sbjct: 69 APSLMFDPNQSNKRKVRKGSDPIHNR 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6587538.15.90e-58100.00hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589506.16.03e-3474.16hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN63668.11.80e-2666.67hypothetical protein Csa_014085 [Cucumis sativus][more]
KDO55565.14.94e-1654.65hypothetical protein CISIN_1g039594mg [Citrus sinensis][more]
OMP04794.15.21e-1652.87hypothetical protein COLO4_09292 [Corchorus olitorius][more]
Match NameE-valueIdentityDescription
A0A0A0LPD58.70e-2766.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1[more]
A0A067ENV62.39e-1654.65Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039594mg PE=4 SV=1[more]
A0A1R3KCL92.52e-1652.87Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_09292 PE=4 SV=1[more]
A0A314YU309.67e-1653.85Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_164... [more]
V4VM139.67e-1653.49Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023845mg PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..92
NoneNo IPR availablePANTHERPTHR36726:SF5CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE11coord: 8..92
IPR038821CLE-related protein 45-likePANTHERPTHR36726CLAVATA3/ESR (CLE)-RELATED PROTEIN 45coord: 8..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g211780.m01Csor.00g211780.m01mRNA