Csor.00g210880 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g210880
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionCLAVATA3/ESR (CLE)-related protein 45
LocationCsor_Chr05: 5576104 .. 5576367 (-)
RNA-Seq ExpressionCsor.00g210880
SyntenyCsor.00g210880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTCAGTATACACAGAGTACTGGTTGTCCTCCTCATGTGTGTTGTTGCACTTTTAGCTGTTCAACCAGATCAGGCTTGTGCTTTGAGAAGCATAGACCTTGCTCCAAGATCTAGTCGCCACATTCTTGTTGAAGACTCGAGGGTGGAGGAAAAGAACATGAAAAGGAATTCACTACCACGAAACAGCAAGTTTGATCCAAATCAATCAAGCAAAAGACGGGTTCGACGAGGTTCGGATCCTATCCACAACAAGTCTTAG

mRNA sequence

ATGGTTTTCAGTATACACAGAGTACTGGTTGTCCTCCTCATGTGTGTTGTTGCACTTTTAGCTGTTCAACCAGATCAGGCTTGTGCTTTGAGAAGCATAGACCTTGCTCCAAGATCTAGTCGCCACATTCTTGTTGAAGACTCGAGGGTGGAGGAAAAGAACATGAAAAGGAATTCACTACCACGAAACAGCAAGTTTGATCCAAATCAATCAAGCAAAAGACGGGTTCGACGAGGTTCGGATCCTATCCACAACAAGTCTTAG

Coding sequence (CDS)

ATGGTTTTCAGTATACACAGAGTACTGGTTGTCCTCCTCATGTGTGTTGTTGCACTTTTAGCTGTTCAACCAGATCAGGCTTGTGCTTTGAGAAGCATAGACCTTGCTCCAAGATCTAGTCGCCACATTCTTGTTGAAGACTCGAGGGTGGAGGAAAAGAACATGAAAAGGAATTCACTACCACGAAACAGCAAGTTTGATCCAAATCAATCAAGCAAAAGACGGGTTCGACGAGGTTCGGATCCTATCCACAACAAGTCTTAG

Protein sequence

MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRHILVEDSRVEEKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS
Homology
BLAST of Csor.00g210880 vs. NCBI nr
Match: KAG6598982.1 (hypothetical protein SDJN03_08760, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (405), Expect = 2.92e-49
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRHILVEDSRVEEKNMKRNSL 60
          MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRHILVEDSRVEEKNMKRNSL
Sbjct: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRHILVEDSRVEEKNMKRNSL 60

Query: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87
          PRNSKFDPNQSSKRRVRRGSDPIHNKS
Sbjct: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87

BLAST of Csor.00g210880 vs. NCBI nr
Match: KAG7029950.1 (hypothetical protein SDJN02_08294, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155 bits (392), Expect = 2.81e-47
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRHILVEDSRVEEKNMKRNSL 60
          MVFSIHRVLVVLLMCVVALLAVQPDQACA+RSIDLA RSSRHILVEDSRVEEKNMKRNSL
Sbjct: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60

Query: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87
          PRNSKFDPNQSSKRRVRRGSDPIHNKS
Sbjct: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87

BLAST of Csor.00g210880 vs. NCBI nr
Match: KAA0032271.1 (CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYK17075.1 CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (345), Expect = 4.03e-40
Identity = 76/87 (87.36%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRHILVEDSRVEEKNMKRNSL 60
          MVFSIHRVL+VLLMCV ALLAV+P+QACALRSIDLA R SRHILVEDSRVEE NMKRNSL
Sbjct: 1  MVFSIHRVLIVLLMCV-ALLAVKPEQACALRSIDLALRPSRHILVEDSRVEELNMKRNSL 60

Query: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87
          P+N+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 86

BLAST of Csor.00g210880 vs. NCBI nr
Match: KGN61380.1 (hypothetical protein Csa_006322 [Cucumis sativus])

HSP 1 Score: 136 bits (342), Expect = 1.19e-39
Identity = 74/85 (87.06%), Postives = 79/85 (92.94%), Query Frame = 0

Query: 3  FSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRHILVEDSRVEEKNMKRNSLPR 62
          FSIHRVL+VLLMCVVALLAV+ DQACALRSIDLA R SRHILVEDS VEE NMKRNS PR
Sbjct: 3  FSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQPR 62

Query: 63 NSKFDPNQSSKRRVRRGSDPIHNKS 87
          N+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 63 NNKFDPNRSSKRRVRRGSDPIHNRS 87

BLAST of Csor.00g210880 vs. NCBI nr
Match: KAG7036811.1 (hypothetical protein SDJN02_00431, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103 bits (257), Expect = 8.61e-27
Identity = 64/87 (73.56%), Postives = 71/87 (81.61%), Query Frame = 0

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRHILVEDSRVEEKNMKRNSL 60
          MVFSIHRVL+VLLMCVVALLAV+P+QAC L S+DLA R  RH+L ED R       RNS 
Sbjct: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVL-EDPRD------RNSR 60

Query: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87
          PRN KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PRN-KFDPNRSSKRRVRRGSDPIHNRS 79

BLAST of Csor.00g210880 vs. ExPASy TrEMBL
Match: A0A5A7SRV2 (CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00220 PE=4 SV=1)

HSP 1 Score: 137 bits (345), Expect = 1.95e-40
Identity = 76/87 (87.36%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRHILVEDSRVEEKNMKRNSL 60
          MVFSIHRVL+VLLMCV ALLAV+P+QACALRSIDLA R SRHILVEDSRVEE NMKRNSL
Sbjct: 1  MVFSIHRVLIVLLMCV-ALLAVKPEQACALRSIDLALRPSRHILVEDSRVEELNMKRNSL 60

Query: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87
          P+N+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 86

BLAST of Csor.00g210880 vs. ExPASy TrEMBL
Match: A0A0A0LHH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1)

HSP 1 Score: 136 bits (342), Expect = 5.77e-40
Identity = 74/85 (87.06%), Postives = 79/85 (92.94%), Query Frame = 0

Query: 3  FSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRHILVEDSRVEEKNMKRNSLPR 62
          FSIHRVL+VLLMCVVALLAV+ DQACALRSIDLA R SRHILVEDS VEE NMKRNS PR
Sbjct: 3  FSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQPR 62

Query: 63 NSKFDPNQSSKRRVRRGSDPIHNKS 87
          N+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 63 NNKFDPNRSSKRRVRRGSDPIHNRS 87

BLAST of Csor.00g210880 vs. ExPASy TrEMBL
Match: A5APJ5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010312 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.02e-16
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 0

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSR--HILVEDSR-------VE 60
          MVFS  RVLV L+   + +LAV+PD+   LRSIDL  R S+  H+L   ++       VE
Sbjct: 1  MVFSAQRVLVFLIC--IGVLAVEPDKVSGLRSIDLVLRQSQEDHMLAPKNQRILKAVVVE 60

Query: 61 EKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 87
          + N + N+ P N KFD NQSSKRRVRRGSDPIHN+S
Sbjct: 61 DLNREENAAPVNKKFDLNQSSKRRVRRGSDPIHNRS 94

BLAST of Csor.00g210880 vs. ExPASy TrEMBL
Match: A0A067GTG0 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034426mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.69e-15
Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 0

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRH---ILVEDSRVEEK---- 60
          MVF   RVL+ LL+C+  LL+VQPD+   LRSIDL  R ++H   ++ ++ R+ ++    
Sbjct: 1  MVFFARRVLI-LLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 --NMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 87
            N ++ S   ++KFDPNQSSKRRVRRGSDPIHN+S
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

BLAST of Csor.00g210880 vs. ExPASy TrEMBL
Match: V4VH78 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033178mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.69e-15
Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 0

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRH---ILVEDSRVEEK---- 60
          MVF   RVL+ LL+C+  LL+VQPD+   LRSIDL  R ++H   ++ ++ R+ ++    
Sbjct: 1  MVFFARRVLI-LLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 --NMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 87
            N ++ S   ++KFDPNQSSKRRVRRGSDPIHN+S
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6598982.12.92e-49100.00hypothetical protein SDJN03_08760, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7029950.12.81e-4797.70hypothetical protein SDJN02_08294, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0032271.14.03e-4087.36CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYK17075.1 CLA... [more]
KGN61380.11.19e-3987.06hypothetical protein Csa_006322 [Cucumis sativus][more]
KAG7036811.18.61e-2773.56hypothetical protein SDJN02_00431, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
A0A5A7SRV21.95e-4087.36CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A0A0LHH05.77e-4087.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1[more]
A5APJ58.02e-1653.13Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010312 PE=4 SV=1[more]
A0A067GTG06.69e-1550.00Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034426mg PE=4 SV=1[more]
V4VH786.69e-1550.00Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033178mg PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..87
IPR038821CLE-related protein 45-likePANTHERPTHR36726CLAVATA3/ESR (CLE)-RELATED PROTEIN 45coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g210880.m01Csor.00g210880.m01mRNA