Csor.00g210270 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g210270
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Mannan endo-1,4-beta-mannosidase
Location	Csor_Chr09: 9629549 .. 9630265 (+)
RNA-Seq Expression	Csor.00g210270
Synteny	Csor.00g210270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTGCTTTTTGGCTCGAATTGCCGGGAAGGATATTGATTGGGTCTTGTGGGCGTTCCAAGGAATTTATATGTACAGACGGTGTCATGAAGATCCTGATGAAAGTTTTGGTGTTATGGATCACTCTTGGACTAAAGATAGTACCCCCATCCCTTAAACAAATGCTTCCACTTATCAAGAGAGTGAATCAAGGTTAATTTGTTGCTTCTCAATCTAACCGCTGCATTATAACAAATCAAACCTTTATATATTTCTTTAGTTAGAATTTGAAACTAAAGCTCTTTTCTTGCGGATCCAAATTCTAAAGCACCAATATCATACATAATGCTGCATCCCGTATCAGGGCAATGTGTCAAATCCGAGGACAAAGGAGGAGTTGAACTCGGCGATTGTGCCACTCCGAAGCAATGGAACATTAGTGGAGATGGAAGTCCCGATGAAGTTGTTGTCAATCGGGCAGGGTTTGAAATCTGTCAGATATGGAAAAGCCCCGGTGGTATCCGACGAATGCTCTGGCGATGGAAGCAATTGGACGGTGGCTTCGAAAGCAAATCTCCAATTGGCCAACAAAATTGGCGAAGACAATTTTTGTTTGGAGAAGGAATCTGATACTATAGTTGTTGTGAAGAAATGCATTTGCTTTAGAGACGAGGGAAGTTGCACGGATGATCCTCAACCCCAATGGTTCAAACTTGTTCCAACAAATGTTGCTTAG

mRNA sequence

ATGAGCTGCTTTTTGGCTCGAATTGCCGGGAAGGATATTGATTGGGGCAATGTGTCAAATCCGAGGACAAAGGAGGAGTTGAACTCGGCGATTGTGCCACTCCGAAGCAATGGAACATTAGTGGAGATGGAAGTCCCGATGAAGTTGTTGTCAATCGGGCAGGGTTTGAAATCTGTCAGATATGGAAAAGCCCCGGTGGTATCCGACGAATGCTCTGGCGATGGAAGCAATTGGACGGTGGCTTCGAAAGCAAATCTCCAATTGGCCAACAAAATTGGCGAAGACAATTTTTGTTTGGAGAAGGAATCTGATACTATAGTTGTTGTGAAGAAATGCATTTGCTTTAGAGACGAGGGAAGTTGCACGGATGATCCTCAACCCCAATGGTTCAAACTTGTTCCAACAAATGTTGCTTAG

Coding sequence (CDS)

ATGAGCTGCTTTTTGGCTCGAATTGCCGGGAAGGATATTGATTGGGGCAATGTGTCAAATCCGAGGACAAAGGAGGAGTTGAACTCGGCGATTGTGCCACTCCGAAGCAATGGAACATTAGTGGAGATGGAAGTCCCGATGAAGTTGTTGTCAATCGGGCAGGGTTTGAAATCTGTCAGATATGGAAAAGCCCCGGTGGTATCCGACGAATGCTCTGGCGATGGAAGCAATTGGACGGTGGCTTCGAAAGCAAATCTCCAATTGGCCAACAAAATTGGCGAAGACAATTTTTGTTTGGAGAAGGAATCTGATACTATAGTTGTTGTGAAGAAATGCATTTGCTTTAGAGACGAGGGAAGTTGCACGGATGATCCTCAACCCCAATGGTTCAAACTTGTTCCAACAAATGTTGCTTAG

Protein sequence

MSCFLARIAGKDIDWGNVSNPRTKEELNSAIVPLRSNGTLVEMEVPMKLLSIGQGLKSVRYGKAPVVSDECSGDGSNWTVASKANLQLANKIGEDNFCLEKESDTIVVVKKCICFRDEGSCTDDPQPQWFKLVPTNVA

Homology

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BLAST of Csor.00g210270 vs. NCBI nr
Match: KAG6592277.1 (hypothetical protein SDJN03_14623, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287 bits (734), Expect = 8.02e-98
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MSCFLARIAGKDIDWGNVSNPRTKEELNSAIVPLRSNGTLVEMEVPMKLLSIGQGLKSVR 60
           MSCFLARIAGKDIDWGNVSNPRTKEELNSAIVPLRSNGTLVEMEVPMKLLSIGQGLKSVR
Sbjct: 1   MSCFLARIAGKDIDWGNVSNPRTKEELNSAIVPLRSNGTLVEMEVPMKLLSIGQGLKSVR 60

Query: 61  YGKAPVVSDECSGDGSNWTVASKANLQLANKIGEDNFCLEKESDTIVVVKKCICFRDEGS 120
           YGKAPVVSDECSGDGSNWTVASKANLQLANKIGEDNFCLEKESDTIVVVKKCICFRDEGS
Sbjct: 61  YGKAPVVSDECSGDGSNWTVASKANLQLANKIGEDNFCLEKESDTIVVVKKCICFRDEGS 120

Query: 121 CTDDPQPQWFKLVPTNVA 138
           CTDDPQPQWFKLVPTNVA
Sbjct: 121 CTDDPQPQWFKLVPTNVA 138

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BLAST of Csor.00g210270 vs. NCBI nr
Match: KAG6592275.1 (hypothetical protein SDJN03_14621, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 265 bits (677), Expect = 1.89e-88
Identity = 138/184 (75.00%), Postives = 138/184 (75.00%), Query Frame = 0


Query: 1   MSCFLARIAGKDIDW--------------------------------------------- 60
           MSCFLARIAGKDIDW                                             
Sbjct: 1   MSCFLARIAGKDIDWVLWAFQGIYMYRRCHEDPDESFGVMDHSWTKDSTPSLKQMLPLIK 60

Query: 61  -GNVSNPRTKEELNSAIVPLRSNGTLVEMEVPMKLLSIGQGLKSVRYGKAPVVSDECSGD 120
            GNVSNPRTKEELNSAIVPLRSNGTLVEMEVPMKLLSIGQGLKSVRYGKAPVVSDECSGD
Sbjct: 61  RGNVSNPRTKEELNSAIVPLRSNGTLVEMEVPMKLLSIGQGLKSVRYGKAPVVSDECSGD 120

Query: 121 GSNWTVASKANLQLANKIGEDNFCLEKESDTIVVVKKCICFRDEGSCTDDPQPQWFKLVP 138
           GSNWTVASKANLQLANKIGEDNFCLEKESDTIVVVKKCICFRDEGSCTDDPQPQWFKLVP
Sbjct: 121 GSNWTVASKANLQLANKIGEDNFCLEKESDTIVVVKKCICFRDEGSCTDDPQPQWFKLVP 180

[Close]

BLAST of Csor.00g210270 vs. NCBI nr
Match: XP_023002681.1 (uncharacterized protein LOC111496466 [Cucurbita maxima] >XP_023002682.1 uncharacterized protein LOC111496467 [Cucurbita maxima])

HSP 1 Score: 150 bits (380), Expect = 2.35e-40
Identity = 77/120 (64.17%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 19  SNPRTKEELNSAIVPLRSNGTLVEMEVPMKLLSIGQGLKSVRYGKAPVVSDECSGDGSNW 78
           SN   + EL     P + N T    +  +   S G+ LKS   GK+PVVSD+CSGDGSNW
Sbjct: 359 SNSNGEAELGDCTAPTQWNHT---GDASLMKSSSGKCLKSAGDGKSPVVSDDCSGDGSNW 418

Query: 79  TVASKANLQLANKIGEDNFCLEKESDTIVVVKKCICFRDEGSCTDDPQPQWFKLVPTNVA 138
           TVASKA LQLA KIGEDNFCLEKESDT +VVKKCIC  D+GSC DDPQ QWFKL+PTNVA
Sbjct: 419 TVASKAKLQLATKIGEDNFCLEKESDTSIVVKKCICL-DQGSCMDDPQSQWFKLIPTNVA 474

[Close]

BLAST of Csor.00g210270 vs. NCBI nr
Match: XP_023536991.1 (uncharacterized protein LOC111798212 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150 bits (379), Expect = 3.29e-40
Identity = 77/120 (64.17%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 19  SNPRTKEELNSAIVPLRSNGTLVEMEVPMKLLSIGQGLKSVRYGKAPVVSDECSGDGSNW 78
           SN   + EL     P + N +    +  +   S G+ LKS   GK+PVVSD+CSGDGSNW
Sbjct: 359 SNSNGEAELGDCTAPTQWNHS---GDASLMKSSSGKCLKSAGDGKSPVVSDDCSGDGSNW 418

Query: 79  TVASKANLQLANKIGEDNFCLEKESDTIVVVKKCICFRDEGSCTDDPQPQWFKLVPTNVA 138
           TVASKA LQLA KIGEDNFCLEKESDT +VVKKCIC  DEGSC DDPQ QWFKL+PTNVA
Sbjct: 419 TVASKAKLQLATKIGEDNFCLEKESDTSIVVKKCICL-DEGSCMDDPQSQWFKLIPTNVA 474

[Close]

BLAST of Csor.00g210270 vs. NCBI nr
Match: XP_022952039.1 (uncharacterized protein LOC111454747 [Cucurbita moschata])

HSP 1 Score: 150 bits (378), Expect = 4.60e-40
Identity = 72/89 (80.90%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 50  LSIGQGLKSVRYGKAPVVSDECSGDGSNWTVASKANLQLANKIGEDNFCLEKESDTIVVV 109
           LS G+ LKS   GK+PVVSD+CSGDGSNWTVASKA LQLA KIGEDNFCLEKESDT +VV
Sbjct: 387 LSSGKCLKSAGDGKSPVVSDDCSGDGSNWTVASKAKLQLATKIGEDNFCLEKESDTSIVV 446

Query: 110 KKCICFRDEGSCTDDPQPQWFKLVPTNVA 138
           KKCIC  DEGSC DDPQ QWFKL+PTNVA
Sbjct: 447 KKCICL-DEGSCMDDPQSQWFKLIPTNVA 474

[Close]

BLAST of Csor.00g210270 vs. ExPASy TrEMBL
Match: A0A6J1KLZ2 (Mannan endo-1,4-beta-mannosidase OS=Cucurbita maxima OX=3661 GN=LOC111496466 PE=3 SV=1)

HSP 1 Score: 150 bits (380), Expect = 1.14e-40
Identity = 77/120 (64.17%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 19  SNPRTKEELNSAIVPLRSNGTLVEMEVPMKLLSIGQGLKSVRYGKAPVVSDECSGDGSNW 78
           SN   + EL     P + N T    +  +   S G+ LKS   GK+PVVSD+CSGDGSNW
Sbjct: 359 SNSNGEAELGDCTAPTQWNHT---GDASLMKSSSGKCLKSAGDGKSPVVSDDCSGDGSNW 418

Query: 79  TVASKANLQLANKIGEDNFCLEKESDTIVVVKKCICFRDEGSCTDDPQPQWFKLVPTNVA 138
           TVASKA LQLA KIGEDNFCLEKESDT +VVKKCIC  D+GSC DDPQ QWFKL+PTNVA
Sbjct: 419 TVASKAKLQLATKIGEDNFCLEKESDTSIVVKKCICL-DQGSCMDDPQSQWFKLIPTNVA 474

[Close]

BLAST of Csor.00g210270 vs. ExPASy TrEMBL
Match: A0A6J1GKH5 (Mannan endo-1,4-beta-mannosidase OS=Cucurbita moschata OX=3662 GN=LOC111454747 PE=3 SV=1)

HSP 1 Score: 150 bits (378), Expect = 2.23e-40
Identity = 72/89 (80.90%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 50  LSIGQGLKSVRYGKAPVVSDECSGDGSNWTVASKANLQLANKIGEDNFCLEKESDTIVVV 109
           LS G+ LKS   GK+PVVSD+CSGDGSNWTVASKA LQLA KIGEDNFCLEKESDT +VV
Sbjct: 387 LSSGKCLKSAGDGKSPVVSDDCSGDGSNWTVASKAKLQLATKIGEDNFCLEKESDTSIVV 446

Query: 110 KKCICFRDEGSCTDDPQPQWFKLVPTNVA 138
           KKCIC  DEGSC DDPQ QWFKL+PTNVA
Sbjct: 447 KKCICL-DEGSCMDDPQSQWFKLIPTNVA 474

[Close]

BLAST of Csor.00g210270 vs. ExPASy TrEMBL
Match: A0A6J1JQD4 (Mannan endo-1,4-beta-mannosidase OS=Cucurbita maxima OX=3661 GN=LOC111487386 PE=3 SV=1)

HSP 1 Score: 149 bits (376), Expect = 4.42e-40
Identity = 73/93 (78.49%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 46  PMKLLSIGQGLKSVRYGKAPVVSDECSGDGSNWTVASKANLQLANKIGEDNFCLEKESDT 105
           PMKLLS GQ LKS   GK+PVVS ECSGDGSNWTV+SKA LQLA KIGEDNFCLEKESD 
Sbjct: 384 PMKLLSNGQCLKSAGDGKSPVVSAECSGDGSNWTVSSKAKLQLATKIGEDNFCLEKESDA 443

Query: 106 IVVVKKCICFRDEGSCTDDPQPQWFKLVPTNVA 138
            +V+KKCIC  DE SC DDPQ QWFKLVPTNV+
Sbjct: 444 SIVLKKCICL-DEESCMDDPQTQWFKLVPTNVS 475

[Close]

BLAST of Csor.00g210270 vs. ExPASy TrEMBL
Match: A0A6J1GQA8 (Mannan endo-1,4-beta-mannosidase OS=Cucurbita moschata OX=3662 GN=LOC111456519 PE=3 SV=1)

HSP 1 Score: 145 bits (367), Expect = 9.01e-39
Identity = 70/93 (75.27%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 46  PMKLLSIGQGLKSVRYGKAPVVSDECSGDGSNWTVASKANLQLANKIGEDNFCLEKESDT 105
           PMKLLS GQ LKS   G++PVVS ECSGDGSNWTV+SKA LQLA K+GEDNFCLEK+SD 
Sbjct: 384 PMKLLSNGQCLKSAGDGQSPVVSAECSGDGSNWTVSSKAKLQLATKVGEDNFCLEKKSDA 443

Query: 106 IVVVKKCICFRDEGSCTDDPQPQWFKLVPTNVA 138
            +V+KKCIC  DE SC DDPQ QWFKLVPTNV+
Sbjct: 444 SIVLKKCICL-DEESCMDDPQTQWFKLVPTNVS 475

[Close]

BLAST of Csor.00g210270 vs. ExPASy TrEMBL
Match: A0A6J1GZR4 (Mannan endo-1,4-beta-mannosidase OS=Cucurbita moschata OX=3662 GN=LOC111459103 PE=3 SV=1)

HSP 1 Score: 142 bits (358), Expect = 1.82e-37
Identity = 69/93 (74.19%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 46  PMKLLSIGQGLKSVRYGKAPVVSDECSGDGSNWTVASKANLQLANKIGEDNFCLEKESDT 105
           PMKLLS GQ LKS   GK+P+VS +CSGD  NWTVASKA LQL+ K+GED+FCLEKESDT
Sbjct: 384 PMKLLSNGQCLKSAGDGKSPIVSTDCSGDEYNWTVASKAKLQLSTKVGEDSFCLEKESDT 443

Query: 106 IVVVKKCICFRDEGSCTDDPQPQWFKLVPTNVA 138
            +VVKKCIC  D  SC DDPQ QWFKLVPTNVA
Sbjct: 444 SIVVKKCICL-DAESCMDDPQSQWFKLVPTNVA 475

The following BLAST results are available for this feature:

BLAST of Csor.00g210270 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g210270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592277.1	8.02e-98	100.00	hypothetical protein SDJN03_14623, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592275.1	1.89e-88	75.00	hypothetical protein SDJN03_14621, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023002681.1	2.35e-40	64.17	uncharacterized protein LOC111496466 [Cucurbita maxima] >XP_023002682.1 uncharac...	[more]
XP_023536991.1	3.29e-40	64.17	uncharacterized protein LOC111798212 [Cucurbita pepo subsp. pepo]	[more]
XP_022952039.1	4.60e-40	80.90	uncharacterized protein LOC111454747 [Cucurbita moschata]	[more]

BLAST of Csor.00g210270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KLZ2	1.14e-40	64.17	Mannan endo-1,4-beta-mannosidase OS=Cucurbita maxima OX=3661 GN=LOC111496466 PE=...	[more]
A0A6J1GKH5	2.23e-40	80.90	Mannan endo-1,4-beta-mannosidase OS=Cucurbita moschata OX=3662 GN=LOC111454747 P...	[more]
A0A6J1JQD4	4.42e-40	78.49	Mannan endo-1,4-beta-mannosidase OS=Cucurbita maxima OX=3661 GN=LOC111487386 PE=...	[more]
A0A6J1GQA8	9.01e-39	75.27	Mannan endo-1,4-beta-mannosidase OS=Cucurbita moschata OX=3662 GN=LOC111456519 P...	[more]
A0A6J1GZR4	1.82e-37	74.19	Mannan endo-1,4-beta-mannosidase OS=Cucurbita moschata OX=3662 GN=LOC111459103 P...	[more]

BLAST of Csor.00g210270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31263	CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560)	coord: 61..137
None	No IPR available	PANTHER	PTHR31263:SF50	HYDROLYZING O-GLYCOSYL COMPOUNDS HYDROLASE	coord: 61..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g210270.m01	Csor.00g210270.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071704	organic substance metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0016985	mannan endo-1,4-beta-mannosidase activity