Csor.00g209530 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g209530
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionTrafficking protein particle complex subunit
LocationCsor_Chr05: 8768688 .. 8772779 (+)
RNA-Seq ExpressionCsor.00g209530
SyntenyCsor.00g209530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGGTCTTGTGCCGATTAATTTACTGCTATCGGTACATAACAAAAGCCTAAGCTACACTCTCGCCATTGTGTCTTTCAAGTTCCCCTCTATCAAGTGAGGTGAAACTATCTGATATGGCATATATCTTTCATCAAACATCTCAAGCCTATTGATAATTTTGTGGTTGTCAGTCCCATATTGCATATCATTTTACCATGATCATCACACAACAGAAACATAAGCTATGTCTTTTAAGGTTTTTCATGATATGGCAGATATCAGAATCACATAACTCTTGCTTGTTTCAATTTATGACCAACTGGTTCTGTTCATAACAGACCCATTAGTATTCATTGCCTGTATTAGACTCTTCCATCTTGTCGTTCAAGTTCTTTGTGAGATGGGAATGAGTGCAACAAAGACGTTGGACCTCGAAGGGGTGTGGATTGTGAAATTCCACATCGATTAGAGTGGAACTAGTGCTAGCGAGGATGCTGAGCCCTAAAGAGGGTGGATTGTGAGATCCCACGTTGGTTGGAGAGGGAAATGAAACATTTTTTTATAAAGGTGTGGAAACCTCTCCCTAGTAGACGTGTTTCAAAAATCTTGAGGGAAAACCCGAAAGGAAAAATTCGAAGAGAACAATATGTGTTAGAGAAAACTCAAAGAGAACAATGTCTGCTAGCGGTGAGCTTGGGCGGTTACATTCTTCCAAGTTATTTGTAGCTATGCAGTTGTTCCTACAATACAACCGGTAAGATAAAGTTTTAATGGTTACTAGCTTGTTTGAAATCGACGTGCTTAGGGACGGTCTTGTGCTGATTTGATTATTAAGCCATCAGCACATAACAAAACCCTAAGCTATATGGTTGCTGCTCTGTATCTTTAGTTTTTCCTTGAGTTTATATTTGGAGAAACTTTCTACACTGTGGCTTACATGTACACTCACTCACAAACAAGCTGCATATATGAATGTAGTTTTTGGCTAGATCACTGATGAGATCGGTCTTCATTCTTCACGTATTGTGCTAGTTCTGAGATAAAGACTGCTCCTGTTGTCTATCAGGGGGGATGGGGTGTTTACTTTTGCATGGTTTTTGTTACATTACTATTAGATAAACTACCTGGGCAAGGCTAGAAAGCGTTGGATTGCTATCTATCCTTCCGGTTTACCTTCGTACTTTTATTGCTTCACAACTTCATCATGGTCATGGATGAATTCCCCCAGGTTTGGGTATAAACAGTGGAAATTACCCCCATGAATGCTTGTATGGTTGGGGAAATCTTTTGGATCAACTTGATTCCAGCTTCATGTAGGTGAGTTGCAGCCTACAATCCAAACTGAGGGTGGGTTTTTGGAATTGGCTCACCCTCATGGGATCACGATCCTTTGTCCCGGCCATTGTAGCATGTGTCACCCAGATAAGGGGCATGATGACTTGACGTCATCCTCACCTTCCTTCGGTTTATCACCACAGTTTGCTTAGGGTTCCAACCTCAACGGTTGGCAACGAAATTTTGGGTTGGTTGTTTTTTTTTTTTTTTTTTTTTAATTATTTAAAAAAAATTTACTTATTCACATGTTAGGTTAATAACTAAATTCTCCGGATGTTCAAATATCTAATATTCACAAGTGTCGCTTTATCATATTAACATTTGTCACAAATGTTAAATATTCTCAATCTTTGTAATAATCTCAAAAGAAAACTCGACGATGTCGCAAATTCGGTTCCCAACCATTGAATTGGGGCATTCCCCACAACAATGCCGAGAATGCAAAGAATACTCGACAGTGTTGCAAACTTGGTTCCCAACCATTGAATTGGGACAATTCCCCACAACAATGCCGAGAAATATTTTTTTGCATGCGTGTGTGAAAAAAATTTTTTTGCATGCGTGTGTGAAAAAACCACACCTGTAGAGCAGCTTTTTCAGAACTGAACGCAAAATAAAACGCACAATCGAATTAGGGTATTGTAGCGAATTAGGGCAAAACAACAATTGAATTAGGGCATTCTAGGTTGCGAATTAGGGCATTCTGGGTGGTAAAATTTTAATTCCGTAATATTTGTTTAAAAAAGTTTTTAATTGAAAAATAAAATTAATTTTTGATAAAAAAAAATAAATCTTAACTCTTTGTTAGTAATTAGCAAAAAAAAAGAAAAAAGAAAAAAGAAAAAAGATTATCATATTTCGCTCTAAATTAAATTAATTTAAAGAAATCTTAAATAAATGAGAAATTATGTATTATCAAATTTTTAAAAGGTTGATTTATATAAAAATTAGTTTAATTATTAATTTTATGTTTTAAATGGGCCTCTCTTCCATTCAGTCTCAAGAGCTCCCGAAACTCCCCCCACTGGCTTATGATCGGCGATCATTGAAACAGGATTTTGCGCCTTTGAATCTACACTGACAATCGCTTTCATTCCATTTCTTTCATAGGACTTTAGAAGTTTCAACCCGGAAAGATCTGAAGAGGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGTAATCAACAAATGGAAACTACTTATTAATGCAATTAGAAACTAGATTCTGCTAATTCCCATCTGGATTGGGAGTTTTGATGCTTAATTTGGTATCTGAAACGAAAAACAAATATGAACCCCAAATCATGATTCCAGTTTGTTTATCAGATTTTCAATCGACCTTCTCTTACTTATGAATTATAAACCGGTTGTGAGTGGAATTATTTTAATCTTCGAATTGAATCTCTAGTTGGCTTGTTTGAAAATTTAGGATTATGGATCTGCTGGACGAATGGACACGAACGATAGCTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCTGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGATCTCCATTGCTTCCAGTCACTTACTGGTACATTTTTTCTTCCACTACTTTGTTTAATTTGTGCTTTAAACGAATGGATTCTGTCTCAAACTATGTTCCGAAGACACGCAATCAAATTCCTAATGTGAAAGCACAATTGAAGTTCTAGGAACCTTATTGATCTTTTGTGAGATCCTATATTGGTTGGAGAGAGGAACGAAACACTCCTTGTAAAGGTGTGGAAACCTCTCCCTAATAGACACATTTAAAACCTTGAGGGGAACCCCGAAAAAGAAAATCCAAAGAGGACAATATCTGCTAGCGGTGGACTTGGACTGTTACCGGGTAATGTGCCAGCAAGGACGCTAGCCCCCAAGAAGGTGGATTGTGAGATCCTACATCGGTTAGAGAGGGGAACGAATCATTCCTTATAAGGGTGTGTAAACCTCTCTCTAGTAGACATGTTTTAAAACCTTGAGGGGAAGTTCGAAAAGGAAAGTCCAAAGAAGACAATATCTGCTAGCAGTAGGCTTGAGTTGTTCAAATGATATCTGCTAGCAGTAGGAAACCTCTCTCTAGCGAGGACGTTTGTCCCTATCAGGGGGTGGATTGTGAGATCCTATATCAATTGGAGAGAGAAACGAAACATTTCTTATAAAGTTGTGGAAACCGTCCCTATAAGGGGGGTGGATTGTGAGATCCTACATCAGTTGGAGAGAGGAACGAAACATTTCTTATAAAGTTGTGGAAACCTCTCCCTAGTAGACGTGTTTTAAAACCGTGAGAGGAAACCCAAAAGGGAAAACTTAAAAAGGACAATATTAGCTAGCAGTGGGCTTGGGCTGTTGTATCTTTCTTGTCTTGAGTTCAGCTCAACAATATATGGGATTTCAAACACAACAGTTGTTGAGATTATAATGCCTTAACTTTCATGTTATATTCATTTTCTAGTTCTTAGTTATGAAGCTGAATCATGGATGAACTTGGCTGTTATAGGAACAAAGTTTTTTGTTGTGTGTGAGCCTGGGACACTGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTATGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATTCGGTGTGAGCTCTTTGATATCAACCTAGTGCAGGCAGTGCAAAAGGATCGTGTTGCTTTGCTTGGTCGATGA

mRNA sequence

ATGGACGGTCTTGTGCCGATTAATTTACTGCTATCGGTACATAACAAAAGCCTAAGCTACACTCTCGCCATTGTGTCTTTCAAGTTCCCCTCTATCAAGACTTTAGAAGTTTCAACCCGGAAAGATCTGAAGAGGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGATTATGGATCTGCTGGACGAATGGACACGAACGATAGCTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCTGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGATCTCCATTGCTTCCAGTCACTTACTGGAACAAAGTTTTTTGTTGTGTGTGAGCCTGGGACACTGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTATGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATTCGGTGTGAGCTCTTTGATATCAACCTAGTGCAGGCAGTGCAAAAGGATCGTGTTGCTTTGCTTGGTCGATGA

Coding sequence (CDS)

ATGGACGGTCTTGTGCCGATTAATTTACTGCTATCGGTACATAACAAAAGCCTAAGCTACACTCTCGCCATTGTGTCTTTCAAGTTCCCCTCTATCAAGACTTTAGAAGTTTCAACCCGGAAAGATCTGAAGAGGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGATTATGGATCTGCTGGACGAATGGACACGAACGATAGCTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCTGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGATCTCCATTGCTTCCAGTCACTTACTGGAACAAAGTTTTTTGTTGTGTGTGAGCCTGGGACACTGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTATGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATTCGGTGTGAGCTCTTTGATATCAACCTAGTGCAGGCAGTGCAAAAGGATCGTGTTGCTTTGCTTGGTCGATGA

Protein sequence

MDGLVPINLLLSVHNKSLSYTLAIVSFKFPSIKTLEVSTRKDLKRMAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR
Homology
[Close]
BLAST of Csor.00g209530 vs. ExPASy Swiss-Prot
Match: Q54UU1 (Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=trappc4 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.7e-33
Identity = 66/125 (52.80%), Postives = 91/125 (72.80%), Query Frame = 0 

Query: 49  IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISG-CSGTELL 108
           I S+YI+NK+G LI+  D+G+  ++  N  +R+ S +HS+HAI+  LSP+SG  SG E++
Sbjct: 3   INSIYILNKAGTLIYQNDFGNTEKLSHNSYIRLGSTFHSLHAIASNLSPVSGSSSGIEVI 62

Query: 109 EADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCEL 168
           E + F L CFQ+ TG KF+V+ +P    +E LL  +YELYTDYVLKNPFYE+EM IRC+L
Sbjct: 63  ETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDL 122

Query: 169 FDINL 173
           FD  L
Sbjct: 123 FDYKL 127

[Close]
BLAST of Csor.00g209530 vs. ExPASy Swiss-Prot
Match: Q2TBL9 (Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.4e-30
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 0 

Query: 72  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEP 131
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 132 GTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQ 178
               ++ LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]
BLAST of Csor.00g209530 vs. ExPASy Swiss-Prot
Match: Q9ES56 (Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trappc4 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.4e-30
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 0 

Query: 72  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEP 131
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 132 GTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQ 178
               ++ LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]
BLAST of Csor.00g209530 vs. ExPASy Swiss-Prot
Match: Q69BT7 (Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=Trappc4 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.4e-30
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 0 

Query: 72  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEP 131
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 132 GTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQ 178
               ++ LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]
BLAST of Csor.00g209530 vs. ExPASy Swiss-Prot
Match: Q9Y296 (Trafficking protein particle complex subunit 4 OS=Homo sapiens OX=9606 GN=TRAPPC4 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.9e-29
Identity = 59/106 (55.66%), Postives = 80/106 (75.47%), Query Frame = 0 

Query: 72  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEP 131
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHC+Q+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161

Query: 132 GTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQ 178
               ++ LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]
BLAST of Csor.00g209530 vs. NCBI nr
Match: KAG6599171.1 (Trafficking protein particle complex subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 374 bits (961), Expect = 7.30e-131
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0 

Query: 1   MDGLVPINLLLSVHNKSLSYTLAIVSFKFPSIKTLEVSTRKDLKRMAAIYSLYIINKSGG 60
           MDGLVPINLLLSVHNKSLSYTLAIVSFKFPSIKTLEVSTRKDLKRMAAIYSLYIINKSGG
Sbjct: 1   MDGLVPINLLLSVHNKSLSYTLAIVSFKFPSIKTLEVSTRKDLKRMAAIYSLYIINKSGG 60

Query: 61  LIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSL 120
           LIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSL
Sbjct: 61  LIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSL 120

Query: 121 TGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQKDR 180
           TGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQKDR
Sbjct: 121 TGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQKDR 180

Query: 181 VALLGR 186
           VALLGR
Sbjct: 181 VALLGR 186

[Close]
BLAST of Csor.00g209530 vs. NCBI nr
Match: XP_022946574.1 (trafficking protein particle complex subunit 4-like [Cucurbita moschata] >XP_022946710.1 trafficking protein particle complex subunit 4-like [Cucurbita moschata] >XP_022999309.1 trafficking protein particle complex subunit 4-like [Cucurbita maxima] >XP_022999558.1 trafficking protein particle complex subunit 4-like [Cucurbita maxima] >XP_023545338.1 trafficking protein particle complex subunit 4-like [Cucurbita pepo subsp. pepo] >KAG6599001.1 Trafficking protein particle complex subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 291 bits (746), Expect = 9.21e-99
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 46  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 105
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 106 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 165
           LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120

Query: 166 ELFDINLVQAVQKDRVALLGR 186
           ELFDINLVQAVQKDRVALLGR
Sbjct: 121 ELFDINLVQAVQKDRVALLGR 141

[Close]
BLAST of Csor.00g209530 vs. NCBI nr
Match: XP_023521099.1 (trafficking protein particle complex subunit 4-like [Cucurbita pepo subsp. pepo] >XP_023522176.1 trafficking protein particle complex subunit 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290 bits (743), Expect = 2.64e-98
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 46  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 105
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 106 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 165
           LLEADTFDLHCFQSLTGTKFFVVCEPGT+HMEGLLKYIYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTVHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120

Query: 166 ELFDINLVQAVQKDRVALLGR 186
           ELFDINLVQAVQKDRVALLGR
Sbjct: 121 ELFDINLVQAVQKDRVALLGR 141

[Close]
BLAST of Csor.00g209530 vs. NCBI nr
Match: XP_015870278.1 (trafficking protein particle complex subunit 4 [Ziziphus jujuba])

HSP 1 Score: 282 bits (722), Expect = 4.19e-95
Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 0 

Query: 46  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 105
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLR+ASLWHSMHAISQQLSPISGCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRMASLWHSMHAISQQLSPISGCSGIE 60

Query: 106 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 165
           LL+ADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLK+IYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLQADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKHIYELYTDYVLKNPFYEMEMPIRC 120

Query: 166 ELFDINLVQAVQKDRVALLGR 186
           ELFDINL QA+QKDRVALLGR
Sbjct: 121 ELFDINLSQAIQKDRVALLGR 141

[Close]
BLAST of Csor.00g209530 vs. NCBI nr
Match: XP_022156391.1 (trafficking protein particle complex subunit 4 [Momordica charantia] >XP_022156392.1 trafficking protein particle complex subunit 4 [Momordica charantia] >XP_022156393.1 trafficking protein particle complex subunit 4 [Momordica charantia])

HSP 1 Score: 281 bits (720), Expect = 8.46e-95
Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 0 

Query: 46  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 105
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIE 60

Query: 106 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 165
           LLEADTFDLHCFQSLTGTKFFVVCEPGT HMEGLLKYIYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 166 ELFDINLVQAVQKDRVALLGR 186
           ELFDINL QAVQKDRVAL GR
Sbjct: 121 ELFDINLSQAVQKDRVALFGR 141

[Close]
BLAST of Csor.00g209530 vs. ExPASy TrEMBL
Match: A0A6J1KK16 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111493886 PE=3 SV=1)

HSP 1 Score: 291 bits (746), Expect = 4.46e-99
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 46  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 105
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 106 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 165
           LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120

Query: 166 ELFDINLVQAVQKDRVALLGR 186
           ELFDINLVQAVQKDRVALLGR
Sbjct: 121 ELFDINLVQAVQKDRVALLGR 141

[Close]
BLAST of Csor.00g209530 vs. ExPASy TrEMBL
Match: A0A6J1G4Q4 (Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111450702 PE=3 SV=1)

HSP 1 Score: 291 bits (746), Expect = 4.46e-99
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 46  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 105
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 106 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 165
           LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120

Query: 166 ELFDINLVQAVQKDRVALLGR 186
           ELFDINLVQAVQKDRVALLGR
Sbjct: 121 ELFDINLVQAVQKDRVALLGR 141

[Close]
BLAST of Csor.00g209530 vs. ExPASy TrEMBL
Match: A0A6P3YZH1 (Trafficking protein particle complex subunit OS=Ziziphus jujuba OX=326968 GN=LOC107407503 PE=3 SV=1)

HSP 1 Score: 282 bits (722), Expect = 2.03e-95
Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 0 

Query: 46  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 105
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLR+ASLWHSMHAISQQLSPISGCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRMASLWHSMHAISQQLSPISGCSGIE 60

Query: 106 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 165
           LL+ADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLK+IYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLQADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKHIYELYTDYVLKNPFYEMEMPIRC 120

Query: 166 ELFDINLVQAVQKDRVALLGR 186
           ELFDINL QA+QKDRVALLGR
Sbjct: 121 ELFDINLSQAIQKDRVALLGR 141

[Close]
BLAST of Csor.00g209530 vs. ExPASy TrEMBL
Match: A0A6J1DUU4 (Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=LOC111023297 PE=3 SV=1)

HSP 1 Score: 281 bits (720), Expect = 4.10e-95
Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 0 

Query: 46  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 105
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIE 60

Query: 106 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 165
           LLEADTFDLHCFQSLTGTKFFVVCEPGT HMEGLLKYIYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 166 ELFDINLVQAVQKDRVALLGR 186
           ELFDINL QAVQKDRVAL GR
Sbjct: 121 ELFDINLSQAVQKDRVALFGR 141

[Close]
BLAST of Csor.00g209530 vs. ExPASy TrEMBL
Match: A0A0A0LJ20 (Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_2G034720 PE=3 SV=1)

HSP 1 Score: 281 bits (718), Expect = 8.26e-95
Identity = 135/141 (95.74%), Postives = 137/141 (97.16%), Query Frame = 0 

Query: 46  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 105
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 106 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 165
           LLEADTFDLHCFQSLTGTKFFVVCEPGT HME LLKYIYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 166 ELFDINLVQAVQKDRVALLGR 186
           ELFDINL QAVQKDRVALLGR
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

[Close]
BLAST of Csor.00g209530 vs. TAIR 10
Match: AT5G02280.1 (SNARE-like superfamily protein )

HSP 1 Score: 267.3 bits (682), Expect = 9.1e-72
Identity = 128/141 (90.78%), Postives = 133/141 (94.33%), Query Frame = 0 

Query: 46  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 105
           MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVASLWHSMHAISQQLSP++GCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDCGTKGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIE 60

Query: 106 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 165
           LLEADTFDLHCFQSL GTKFFVVCEPGT HME LL+YIYELYTDYVLKNPFYE+EMPIRC
Sbjct: 61  LLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVLKNPFYEIEMPIRC 120

Query: 166 ELFDINLVQAVQKDRVALLGR 187
           ELFDINL QAVQ DRVALLGR
Sbjct: 121 ELFDINLTQAVQSDRVALLGR 141

[Close]
BLAST of Csor.00g209530 vs. TAIR 10
Match: AT1G51160.1 (SNARE-like superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10
Identity = 40/144 (27.78%), Postives = 69/144 (47.92%), Query Frame = 0 

Query: 50  YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPIS-------- 109
           + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P++        
Sbjct: 24  HMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGV 83

Query: 110 ------GCSGTELLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLK 169
                 GCS       +T+ L   ++ +G K  +V  P T  +   LKYIY LY +YV+K
Sbjct: 84  PQLPGQGCS-FHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVK 143

Query: 170 NPFYEMEMPIRCELFDINLVQAVQ 178
           NP Y    PI+ ELF+  L Q V+
Sbjct: 144 NPIYSPGSPIKSELFNTALDQYVR 166

[Close]
BLAST of Csor.00g209530 vs. TAIR 10
Match: AT1G51160.2 (SNARE-like superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10
Identity = 40/144 (27.78%), Postives = 69/144 (47.92%), Query Frame = 0 

Query: 50  YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPIS-------- 109
           + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P++        
Sbjct: 24  HMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGV 83

Query: 110 ------GCSGTELLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLK 169
                 GCS       +T+ L   ++ +G K  +V  P T  +   LKYIY LY +YV+K
Sbjct: 84  PQLPGQGCS-FHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVK 143

Query: 170 NPFYEMEMPIRCELFDINLVQAVQ 178
           NP Y    PI+ ELF+  L Q V+
Sbjct: 144 NPIYSPGSPIKSELFNTALDQYVR 166

The following BLAST results are available for this feature:
BLAST of Csor.00g209530 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q54UU13.7e-3352.80Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44... [more]
Q2TBL98.4e-3056.60Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 ... [more]
Q9ES568.4e-3056.60Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trapp... [more]
Q69BT78.4e-3056.60Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=... [more]
Q9Y2961.9e-2955.66Trafficking protein particle complex subunit 4 OS=Homo sapiens OX=9606 GN=TRAPPC... [more]
BLAST of Csor.00g209530 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6599171.17.30e-131100.00Trafficking protein particle complex subunit 4, partial [Cucurbita argyrosperma ... [more]
XP_022946574.19.21e-99100.00trafficking protein particle complex subunit 4-like [Cucurbita moschata] >XP_022... [more]
XP_023521099.12.64e-9899.29trafficking protein particle complex subunit 4-like [Cucurbita pepo subsp. pepo]... [more]
XP_015870278.14.19e-9595.74trafficking protein particle complex subunit 4 [Ziziphus jujuba][more]
XP_022156391.18.46e-9596.45trafficking protein particle complex subunit 4 [Momordica charantia] >XP_0221563... [more]
BLAST of Csor.00g209530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KK164.46e-99100.00Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1G4Q44.46e-99100.00Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6P3YZH12.03e-9595.74Trafficking protein particle complex subunit OS=Ziziphus jujuba OX=326968 GN=LOC... [more]
A0A6J1DUU44.10e-9596.45Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=L... [more]
A0A0A0LJ208.26e-9595.74Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_2... [more]
BLAST of Csor.00g209530 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02280.19.1e-7290.78SNARE-like superfamily protein [more]
AT1G51160.11.2e-1027.78SNARE-like superfamily protein [more]
AT1G51160.21.2e-1027.78SNARE-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007233Trafficking protein particle complex subunitSMARTSM01399Sybindin_2coord: 49..179
e-value: 1.2E-68
score: 244.0
IPR007233Trafficking protein particle complex subunitPFAMPF04099Sybindincoord: 49..178
e-value: 3.2E-51
score: 173.0
IPR007233Trafficking protein particle complex subunitPANTHERPTHR23249TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNITcoord: 33..186
NoneNo IPR availableGENE3D3.30.450.70coord: 47..178
e-value: 5.0E-47
score: 161.8
NoneNo IPR availablePANTHERPTHR23249:SF17TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT-RELATEDcoord: 33..186
NoneNo IPR availableCDDcd14856TRAPPC4_synbindincoord: 50..175
e-value: 8.57723E-82
score: 236.26
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 46..178

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g209530.m01Csor.00g209530.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0030008 TRAPP complex