Csor.00g208650 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g208650
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	PsbP domain-containing protein
Location	Csor_Chr05: 8081839 .. 8084668 (-)
RNA-Seq Expression	Csor.00g208650
Synteny	Csor.00g208650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCCTTCCTTCACCCAGCGCTGTAATCCAACGCCCTCGTTCATGGCGCTTCACACCATCATCACTCTCCAATGGTAATCTTCCCTCGCCTTTCACTTCATGCGCCATTGTTAACTCTTATCATCTTCCTTCTTTACATTTCAGGAATCGCCATTCCTATCCGCACAAGGCTCCGTGTTTTCTGCTCTGGCAAGAACATCGACATTCCCGATCAAAAACCCTGGTAAATTGGCCTCTCTTTCTCTTTGCTTGTTATCCATTTCAATTCTATTGTTGCTTCGTTGGAGTCCGTAAATTCAAATGCTCGTTCCTTCTGTTGGTTCTTAGTTGTTGGACTAGCGGAGTTAATAGACGAGAGATTGTGCTAGGAATGGGATTGACTGCGTTTTCTTTCCAAGAAGTTGTTTCTATTGCCCTAGCCGAGAGTGGTACCGATTTTACCTTCTTCCTCACGAGCGTGTTCTCTGGAATTACATTATCCCTCTTTCGTATTGTTTTTATTTGAAGATTGAATGCGTTCAGTTTACGGGTGATAGTTGTTGCTGAGGATTATCGGACGTACACAGATGAAGCGAATAAGTTCAGATTGGTGATTCCTCAAGGTGTACGGCTTGGCTCCATTGGCTGAGCTTTTTGTCTTGAGAATTAGAGATTAAACTGTATTAATTACTTGAACTTGTGTGATTTATGCAGATTGGCAAGTCGGTAATGGTGAACCGAATGGATTCAAGTTGGTTACGGCTTTTTTTCCTAAAGAAACTTTGAGTTCCAATGGTATTGTTAGATCTTTTCTCATTTTCTCTCCCTCGGTTCGATTTTGAATAGCTTGATCGACTGAAATTTGGTTCAGTCAGTGTTGTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCCTTTGGCAAGGTTGAAGAATTTGCTGATACCCTGGTATGACTTTCATATCAATTGGCAGTTCTTGAAATGAAAAAAGTGGATTTCCTTTTGCTGTTTTTGAACCAAACAAGAAACCCAAAACTGGTACTCTTTTCTTGAAGTTTCTTAAATAGAAAACGACAGCCAAAATTGAATCCAAAATGGGGTCTCGTTCTTTGCTGTTCTTGAATGGAAATAGATAGATAGCCTAAATCTGGATTTTCCTCCTCTTGATATCTCTTTCAGGTGAGCGGACTGGACAGAAGCTGGAAAAGGCCACCTGGTGTGGCGGCGAAACTTATAGACTGTAGATCATCTAAAGGTATGTGGCACATGTACAACCAGTTAACTCAGAATCTTAGCTGAAATGAAACTTAAAAGGAAAATTGTTTACAAAACATTGTAAACATGGAACTTACTTAAAGAATTATGCCCACCACAGGTTGTTTTATTCTATTAGGTGTGAATAAAGTTCCACATTAGTCGTAGAAGGGAGAGATTCATGGTATATTAAGTGAGGATAAGGTCTTTTGATTGAAAACAAAAGTGGAGCGATGAAAATTTATGAACAAAATACATAATATTACGTTAGGAACAACGATTCCCTACAATGGTATGCTATTGTCCACTTTGAGCATAAGCTCTTATAGTTTTGCTTTGGACTTACTAAAAAATCTTCGTACCAATAGAGATATATTCCTTACTTATAAGCCCATGATCATTCCCTAAATTAGTCCATGTGGAACTCCCACCCAACAATCCTCAACGTCCTATACGAATGTGGAGATATATGGAGGGTTGATAATCATTATCTTGTTCTATCGTTTTTATTATATAGCAGTTCCTGATGAATCTACTATGCCTTCTGTAGTATGTTTCTAAAATTACACAGTTCCTTCTCGTCATAATACAATGAGGTTTGATTTGAAAAGAAATAATGGCAGGGATATATTACATAGAGTACACGCTGCAGAATCCAGGTGAAGGCCGCAACCATTTATACTCCGCAATTGGGATGGCATCCAATGGTTGGTACAACAGACTTTACACCGTAACGGGACAGGTAGGTTGCTCATAATCTCTATCAATACACTTACTCGTTCGACTTCTAAATGTATTGTTTTAGTAGCTTGATCTAAAAACCCTCTAGTTCTTGCTGTTAATTATCAATCATTCGACAAAACTATTGAAATGTCTTATGTTTTTCTACATGAGACTTCAAATATAATATCCATCTAGATAAAATAGGTAACCAGACAAACAAAAAGTTGTTCATCTAGCATTAGAACACTTTTGCTAAATATATTCGGGAGTATTAAAGATAACAAAATCCTTTTCTTTTGTGTGAAATCTTCAAACACCATGTGATGACATATCCATTTTATGCTAACAAATTTGAGTAAGTATTTTCTGGTAGAATGACTCGGTTGAAATTATAATACATTAGGAATAAAATCGAGAATTTTAGAAGATATAAAGATCAAATTAAGAGTTGTTTATCTTGATATATTTAGCAATAGTGTTCTGATGAACATTTTTTTTGTGCCTGTTTATCCAATTTGTAATTTTATCTAGATTGATAATTGACAGCAAGAACTAGAACGGTTTTTAGATCAAGCTACTAAAACAATACATTTAGAAGTTAAAGGACTAAAAAAACCGAAACTCAACCGATATAAAAGTTAGGAACGAAAATAAGATGGTGGGAAATCTTTGTTTTGTTTTGATAATTGGTTTGATTTGTTGTACAGTATGGAGATGAAGATTCAGAGAAGTTTAGTTCCGAAATTAAGAAGGTTAGTGGGAGAGATATCCCAAGCTCGTGCTCTTAATTTTCATATAATCTATTCTCAAAGTTCCTCTGAATGTTGGCTTTGTAGGTTGTCAATTCCTTCACTTTCATTTGA

mRNA sequence

ATGGCGTCCCTTCCTTCACCCAGCGCTGTAATCCAACGCCCTCGTTCATGGCGCTTCACACCATCATCACTCTCCAATGGAATCGCCATTCCTATCCGCACAAGGCTCCGTGTTTTCTGCTCTGGCAAGAACATCGACATTCCCGATCAAAAACCCTGTTGTTGGACTAGCGGAGTTAATAGACGAGAGATTGTGCTAGGAATGGGATTGACTGCGTTTTCTTTCCAAGAAGTTGTTTCTATTGCCCTAGCCGAGAGTGTTGTTGCTGAGGATTATCGGACGTACACAGATGAAGCGAATAAGTTCAGATTGGTGATTCCTCAAGATTGGCAAGTCGGTAATGGTGAACCGAATGGATTCAAGTTGGTTACGGCTTTTTTTCCTAAAGAAACTTTGAGTTCCAATGTCAGTGTTGTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCCTTTGGCAAGGTTGAAGAATTTGCTGATACCCTGGTGAGCGGACTGGACAGAAGCTGGAAAAGGCCACCTGGTGTGGCGGCGAAACTTATAGACTGTAGATCATCTAAAGGGATATATTACATAGAGTACACGCTGCAGAATCCAGGTGAAGGCCGCAACCATTTATACTCCGCAATTGGGATGGCATCCAATGGTTGGTACAACAGACTTTACACCGTAACGGGACAGTATGGAGATGAAGATTCAGAGAAGTTTAGTTCCGAAATTAAGAAGGTTGTCAATTCCTTCACTTTCATTTGA

Coding sequence (CDS)

ATGGCGTCCCTTCCTTCACCCAGCGCTGTAATCCAACGCCCTCGTTCATGGCGCTTCACACCATCATCACTCTCCAATGGAATCGCCATTCCTATCCGCACAAGGCTCCGTGTTTTCTGCTCTGGCAAGAACATCGACATTCCCGATCAAAAACCCTGTTGTTGGACTAGCGGAGTTAATAGACGAGAGATTGTGCTAGGAATGGGATTGACTGCGTTTTCTTTCCAAGAAGTTGTTTCTATTGCCCTAGCCGAGAGTGTTGTTGCTGAGGATTATCGGACGTACACAGATGAAGCGAATAAGTTCAGATTGGTGATTCCTCAAGATTGGCAAGTCGGTAATGGTGAACCGAATGGATTCAAGTTGGTTACGGCTTTTTTTCCTAAAGAAACTTTGAGTTCCAATGTCAGTGTTGTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCCTTTGGCAAGGTTGAAGAATTTGCTGATACCCTGGTGAGCGGACTGGACAGAAGCTGGAAAAGGCCACCTGGTGTGGCGGCGAAACTTATAGACTGTAGATCATCTAAAGGGATATATTACATAGAGTACACGCTGCAGAATCCAGGTGAAGGCCGCAACCATTTATACTCCGCAATTGGGATGGCATCCAATGGTTGGTACAACAGACTTTACACCGTAACGGGACAGTATGGAGATGAAGATTCAGAGAAGTTTAGTTCCGAAATTAAGAAGGTTGTCAATTCCTTCACTTTCATTTGA

Protein sequence

MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVNRREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGFKLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSEIKKVVNSFTFI

Homology

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BLAST of Csor.00g208650 vs. ExPASy Swiss-Prot
Match: Q9S720 (PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD3 PE=1 SV=2)

HSP 1 Score: 279.3 bits (713), Expect = 4.4e-74
Identity = 130/194 (67.01%), Postives = 157/194 (80.93%), Query Frame = 0


Query: 58  GVNRREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYTDEANKFRLVIPQDWQVGNGEP 117
           G+ RR+++L +  + F     +S A AE+  +E +R YTDE NKF + IPQDWQVG  EP
Sbjct: 54  GMKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQAEP 113

Query: 118 NGFKLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGV 177
           NGFK +TAF+P+ET +SNVS+ I+GLGPDFTRMESFGKVE FA+TLVSGLDRSW++P GV
Sbjct: 114 NGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGV 173

Query: 178 AAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKF 237
            AKLID R+SKG YYIEYTLQNPGE R HLYSAIGMA+NGWYNRLYTVTGQ+ DE+S + 
Sbjct: 174 TAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQ 233

Query: 238 SSEIKKVVNSFTFI 252
           SS+I+K V SF FI
Sbjct: 234 SSKIQKTVKSFRFI 247

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BLAST of Csor.00g208650 vs. NCBI nr
Match: XP_022946502.1 (psbP domain-containing protein 3, chloroplastic [Cucurbita moschata] >KAG6599083.1 PsbP domain-containing protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 510 bits (1314), Expect = 1.61e-182
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN 60
           MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN
Sbjct: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN 60

Query: 61  RREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGF 120
           RREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGF
Sbjct: 61  RREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGF 120

Query: 121 KLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK 180
           KLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK
Sbjct: 121 KLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK 180

Query: 181 LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE 240
           LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE
Sbjct: 181 LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE 240

Query: 241 IKKVVNSFTFI 251
           IKKVVNSFTFI
Sbjct: 241 IKKVVNSFTFI 251

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BLAST of Csor.00g208650 vs. NCBI nr
Match: XP_023546046.1 (psbP domain-containing protein 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 507 bits (1305), Expect = 3.80e-181
Identity = 249/251 (99.20%), Postives = 250/251 (99.60%), Query Frame = 0


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN 60
           MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN
Sbjct: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN 60

Query: 61  RREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGF 120
           RREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTY DEANKFRLVIPQDWQVGNGEPNGF
Sbjct: 61  RREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYIDEANKFRLVIPQDWQVGNGEPNGF 120

Query: 121 KLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK 180
           KLVTAFFP+ETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK
Sbjct: 121 KLVTAFFPRETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK 180

Query: 181 LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE 240
           LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE
Sbjct: 181 LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE 240

Query: 241 IKKVVNSFTFI 251
           IKKVVNSFTFI
Sbjct: 241 IKKVVNSFTFI 251

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BLAST of Csor.00g208650 vs. NCBI nr
Match: XP_022999754.1 (psbP domain-containing protein 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 506 bits (1304), Expect = 5.40e-181
Identity = 249/251 (99.20%), Postives = 250/251 (99.60%), Query Frame = 0


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN 60
           MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN
Sbjct: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN 60

Query: 61  RREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGF 120
           RREI LGMGLTAFSFQEVVSIALAE+VVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGF
Sbjct: 61  RREIGLGMGLTAFSFQEVVSIALAENVVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGF 120

Query: 121 KLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK 180
           KLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK
Sbjct: 121 KLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK 180

Query: 181 LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE 240
           LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE
Sbjct: 181 LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE 240

Query: 241 IKKVVNSFTFI 251
           IKKVVNSFTFI
Sbjct: 241 IKKVVNSFTFI 251

[Close]

BLAST of Csor.00g208650 vs. NCBI nr
Match: KAG7030019.1 (PsbP domain-containing protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 495 bits (1275), Expect = 1.06e-176
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN 60
           MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN
Sbjct: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN 60

Query: 61  RREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGF 120
           RREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGF
Sbjct: 61  RREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGF 120

Query: 121 KLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK 180
           KLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK
Sbjct: 121 KLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK 180

Query: 181 LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE 240
           LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE
Sbjct: 181 LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE 240

Query: 241 IKK 243
           IKK
Sbjct: 241 IKK 243

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BLAST of Csor.00g208650 vs. NCBI nr
Match: XP_038885576.1 (psbP domain-containing protein 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 443 bits (1140), Expect = 5.60e-156
Identity = 219/252 (86.90%), Postives = 235/252 (93.25%), Query Frame = 0


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN 60
           MASLPSPSAVIQRPRSWRF+ SS SNG+ IPIR++LRVFCSG NI+I +Q+ C W SGVN
Sbjct: 1   MASLPSPSAVIQRPRSWRFSQSSPSNGLPIPIRSKLRVFCSGNNINISNQQSCYWASGVN 60

Query: 61  RREIVLGMGLTAFSFQEVVSIALAESV-VAEDYRTYTDEANKFRLVIPQDWQVGNGEPNG 120
           RREI+LG+GLTAFSFQEVVS ALAESV VAEDYRTYTDEANKFRL IPQDWQVGNGEPNG
Sbjct: 61  RREIMLGIGLTAFSFQEVVSNALAESVMVAEDYRTYTDEANKFRLAIPQDWQVGNGEPNG 120

Query: 121 FKLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAA 180
           FK VTAFFP+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAA
Sbjct: 121 FKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAA 180

Query: 181 KLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSS 240
           KLI+CRSSKGIYYIEYTLQNPGE R HLYSAIGMASNGWYNRLYT+TGQY DE+SE +SS
Sbjct: 181 KLINCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLYTITGQYADEESENYSS 240

Query: 241 EIKKVVNSFTFI 251
           +I+KVVNSFTFI
Sbjct: 241 KIEKVVNSFTFI 252

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BLAST of Csor.00g208650 vs. ExPASy TrEMBL
Match: A0A6J1G3W9 (psbP domain-containing protein 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450544 PE=4 SV=1)

HSP 1 Score: 510 bits (1314), Expect = 7.82e-183
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN 60
           MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN
Sbjct: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN 60

Query: 61  RREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGF 120
           RREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGF
Sbjct: 61  RREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGF 120

Query: 121 KLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK 180
           KLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK
Sbjct: 121 KLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK 180

Query: 181 LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE 240
           LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE
Sbjct: 181 LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE 240

Query: 241 IKKVVNSFTFI 251
           IKKVVNSFTFI
Sbjct: 241 IKKVVNSFTFI 251

[Close]

BLAST of Csor.00g208650 vs. ExPASy TrEMBL
Match: A0A6J1KI01 (psbP domain-containing protein 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494008 PE=4 SV=1)

HSP 1 Score: 506 bits (1304), Expect = 2.62e-181
Identity = 249/251 (99.20%), Postives = 250/251 (99.60%), Query Frame = 0


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN 60
           MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN
Sbjct: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAIPIRTRLRVFCSGKNIDIPDQKPCCWTSGVN 60

Query: 61  RREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGF 120
           RREI LGMGLTAFSFQEVVSIALAE+VVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGF
Sbjct: 61  RREIGLGMGLTAFSFQEVVSIALAENVVAEDYRTYTDEANKFRLVIPQDWQVGNGEPNGF 120

Query: 121 KLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK 180
           KLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK
Sbjct: 121 KLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAK 180

Query: 181 LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE 240
           LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE
Sbjct: 181 LIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFSSE 240

Query: 241 IKKVVNSFTFI 251
           IKKVVNSFTFI
Sbjct: 241 IKKVVNSFTFI 251

[Close]

BLAST of Csor.00g208650 vs. ExPASy TrEMBL
Match: A0A6J1DNN6 (psbP domain-containing protein 3, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022894 PE=4 SV=1)

HSP 1 Score: 412 bits (1058), Expect = 9.74e-144
Identity = 210/256 (82.03%), Postives = 227/256 (88.67%), Query Frame = 0


Query: 1   MASLPSPS--AVIQRPRSWRFTPSSLSNGIAIPIRTRLR--VFCSGKNIDIPDQKPCCWT 60
           MASLPSPS  AVIQRPR WRF  SSLSNGIAI IR++ +  V CS  NIDI D + C W 
Sbjct: 1   MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA 60

Query: 61  SGVNRREIVLGMGLTAFSFQEVVSIALAESVV-AEDYRTYTDEANKFRLVIPQDWQVGNG 120
           SGVNRREI+LG+ L+ FSFQ VVS +LAESVV AED+RTYTDEANKFRLVIPQDW VGNG
Sbjct: 61  SGVNRREIMLGIALSTFSFQAVVSNSLAESVVVAEDFRTYTDEANKFRLVIPQDWVVGNG 120

Query: 121 EPNGFKLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPP 180
           EPNGFK VTAF+P+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPP
Sbjct: 121 EPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPP 180

Query: 181 GVAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSE 240
           GVAAKLIDCRSSKGIYYIEYTLQNPGE R HLYSAIGMASNGWYNRLYT+TGQY DE+SE
Sbjct: 181 GVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLYTITGQYADEESE 240

Query: 241 KFSSEIKKVVNSFTFI 251
            +SS+I+KVVNSF+FI
Sbjct: 241 NYSSKIEKVVNSFSFI 256

[Close]

BLAST of Csor.00g208650 vs. ExPASy TrEMBL
Match: A0A0A0KDI5 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401450 PE=4 SV=1)

HSP 1 Score: 403 bits (1035), Expect = 3.22e-140
Identity = 208/255 (81.57%), Postives = 225/255 (88.24%), Query Frame = 0


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAI-PIRTRLRVFCS--GKNIDIPDQKPCCWTS 60
           MASL SPSAVI RP S RF+ SSLSNG +I PIR+ LRVFCS  G +I   ++KP    S
Sbjct: 3   MASLLSPSAVILRPHSLRFSQSSLSNGFSIIPIRSTLRVFCSANGNSIHTSNKKPSYLAS 62

Query: 61  GVNRREIVLGMGLTAFSFQEVVSIALAESVV-AEDYRTYTDEANKFRLVIPQDWQVGNGE 120
           GVNRREI+LG+G TAFSFQEV S ALAESVV AEDYRTYTDEANKF LVIPQDWQVGNGE
Sbjct: 63  GVNRREIMLGIGFTAFSFQEVGSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNGE 122

Query: 121 PNGFKLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPG 180
           PNGFK VTAFFP+ET +SNVSVVISGLGPD+TRMESFGKVEEFADTLVSGLDRSWKRPPG
Sbjct: 123 PNGFKSVTAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPPG 182

Query: 181 VAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEK 240
           VAAKLIDCRSSKGIYYIEYTLQNPGE R HLYSAIGM+SNGWYNRLYT+TGQY DE+SE 
Sbjct: 183 VAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMSSNGWYNRLYTITGQYADEESES 242

Query: 241 FSSEIKKVVNSFTFI 251
           +SS+I+KVVNSF FI
Sbjct: 243 YSSKIEKVVNSFAFI 257

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BLAST of Csor.00g208650 vs. ExPASy TrEMBL
Match: A0A1S3CMG5 (psbP domain-containing protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502604 PE=4 SV=1)

HSP 1 Score: 393 bits (1010), Expect = 1.55e-136
Identity = 203/253 (80.24%), Postives = 221/253 (87.35%), Query Frame = 0


Query: 1   MASLPSPSAVIQRPRSWRFTPSSLSNGIAI-PIRTRLRVFCSGKNIDIPDQKPCCWTSGV 60
           M SL SPSA+IQRP S+RF+ SSLSNG +I PIR+ LRVFCS       ++KP    S V
Sbjct: 3   MPSLLSPSALIQRPHSFRFSQSSLSNGFSIFPIRSTLRVFCSA------NKKPSYLASRV 62

Query: 61  NRREIVLGMGLTAFSFQEVVSIALAESVV-AEDYRTYTDEANKFRLVIPQDWQVGNGEPN 120
           NRREI+LG+G TAFS QEVVS ALAESVV AEDYRTYTDEANKF LVIPQDWQVGNGEPN
Sbjct: 63  NRREIMLGIGFTAFSLQEVVSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNGEPN 122

Query: 121 GFKLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVA 180
           GFK VTAFFP+ET +SNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVA
Sbjct: 123 GFKSVTAFFPQETSTSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVA 182

Query: 181 AKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKFS 240
           AKLI+CRSSKGIYYIEYTLQNPGE R HLYSAIGM SNGWYNRLYT+TGQY DE+S  +S
Sbjct: 183 AKLINCRSSKGIYYIEYTLQNPGESRRHLYSAIGMTSNGWYNRLYTITGQYADEESANYS 242

Query: 241 SEIKKVVNSFTFI 251
           S+I+KVVNSF+FI
Sbjct: 243 SKIEKVVNSFSFI 249

[Close]

BLAST of Csor.00g208650 vs. TAIR 10
Match: AT1G76450.1 (Photosystem II reaction center PsbP family protein )

HSP 1 Score: 279.3 bits (713), Expect = 3.1e-75
Identity = 130/194 (67.01%), Postives = 157/194 (80.93%), Query Frame = 0


Query: 58  GVNRREIVLGMGLTAFSFQEVVSIALAESVVAEDYRTYTDEANKFRLVIPQDWQVGNGEP 117
           G+ RR+++L +  + F     +S A AE+  +E +R YTDE NKF + IPQDWQVG  EP
Sbjct: 54  GMKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQAEP 113

Query: 118 NGFKLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGV 177
           NGFK +TAF+P+ET +SNVS+ I+GLGPDFTRMESFGKVE FA+TLVSGLDRSW++P GV
Sbjct: 114 NGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGV 173

Query: 178 AAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLYTVTGQYGDEDSEKF 237
            AKLID R+SKG YYIEYTLQNPGE R HLYSAIGMA+NGWYNRLYTVTGQ+ DE+S + 
Sbjct: 174 TAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQ 233

Query: 238 SSEIKKVVNSFTFI 252
           SS+I+K V SF FI
Sbjct: 234 SSKIQKTVKSFRFI 247

The following BLAST results are available for this feature:

BLAST of Csor.00g208650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S720	4.4e-74	67.01	PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Csor.00g208650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946502.1	1.61e-182	100.00	psbP domain-containing protein 3, chloroplastic [Cucurbita moschata] >KAG6599083...	[more]
XP_023546046.1	3.80e-181	99.20	psbP domain-containing protein 3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022999754.1	5.40e-181	99.20	psbP domain-containing protein 3, chloroplastic [Cucurbita maxima]	[more]
KAG7030019.1	1.06e-176	100.00	PsbP domain-containing protein 3, chloroplastic, partial [Cucurbita argyrosperma...	[more]
XP_038885576.1	5.60e-156	86.90	psbP domain-containing protein 3, chloroplastic [Benincasa hispida]	[more]

BLAST of Csor.00g208650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G3W9	7.82e-183	100.00	psbP domain-containing protein 3, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KI01	2.62e-181	99.20	psbP domain-containing protein 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1DNN6	9.74e-144	82.03	psbP domain-containing protein 3, chloroplastic isoform X2 OS=Momordica charanti...	[more]
A0A0A0KDI5	3.22e-140	81.57	PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401450 PE=4 S...	[more]
A0A1S3CMG5	1.55e-136	80.24	psbP domain-containing protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Csor.00g208650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76450.1	3.1e-75	67.01	Photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 91..250 e-value: 3.3E-34 score: 118.3
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 82..250 e-value: 1.2E-33 score: 118.4
None	No IPR available	PANTHER	PTHR31407:SF17	PSBP DOMAIN-CONTAINING PROTEIN 3, CHLOROPLASTIC	coord: 41..251
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 41..251
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 93..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g208650.m01	Csor.00g208650.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding