Csor.00g208520 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g208520
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr05: 7951936 .. 7952466 (-)
RNA-Seq Expression	Csor.00g208520
Synteny	Csor.00g208520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTTGGCCACTTCCGTCTAAGAGAATCCCATCCTCAGTCTTTGCTGAGTCTGATATCAATGGCGTATGCGCTTGAATCAACCTATCTTTGTATAAACAAATAGTCTTCGGAAAGATGCCTCTCTTTTTCTTGTTTTATTGTTATTGTTTTGAGGAATTGAAATATTAACTGATTGAGCTACAAGCATAACAGCCTTAGGCAAGGGAGAAAGACAACCAAGGAAAAGAGCTGAACCAAACAAGAACGGAGAACAAGCTAGACCTCCAATTGTCATTGAGACCACTTCAACAAGTGAACTGCAAACCCGGGCTGGAGAGGGAGTTCAAGTGGCTCTCCTTCGTCTGTCCCTGCCTGAGATTGTAAAGATTCCACCGCCTCTCCCAGTGGTACCTACGAACATAGGACTATTCCTGAGGTGAGCTTCTCTACCCATTTATTTGTTTTCAAGCTAACAAGGTTTTTCTAACTAAAGCTTATGTCCATCTTCATTCTCAGGTACCAACTCCACAAAGTGCCGGACTATTAG

mRNA sequence

ATGATTCTTGGCCACTTCCGTCTAAGAGAATCCCATCCTCAGTCTTTGCTGAGTCTGATATCAATGGCGTATGCGCTTGAATCAACCTATCTTTCCTTAGGCAAGGGAGAAAGACAACCAAGGAAAAGAGCTGAACCAAACAAGAACGGAGAACAAGCTAGACCTCCAATTGTCATTGAGACCACTTCAACAAGTGAACTGCAAACCCGGGCTGGAGAGGGAGTTCAAGTGGCTCTCCTTCGTCTGTCCCTGCCTGAGATTGTAAAGATTCCACCGCCTCTCCCAGTGGTACCTACGAACATAGGACTATTCCTGAGGTACCAACTCCACAAAGTGCCGGACTATTAG

Coding sequence (CDS)

ATGATTCTTGGCCACTTCCGTCTAAGAGAATCCCATCCTCAGTCTTTGCTGAGTCTGATATCAATGGCGTATGCGCTTGAATCAACCTATCTTTCCTTAGGCAAGGGAGAAAGACAACCAAGGAAAAGAGCTGAACCAAACAAGAACGGAGAACAAGCTAGACCTCCAATTGTCATTGAGACCACTTCAACAAGTGAACTGCAAACCCGGGCTGGAGAGGGAGTTCAAGTGGCTCTCCTTCGTCTGTCCCTGCCTGAGATTGTAAAGATTCCACCGCCTCTCCCAGTGGTACCTACGAACATAGGACTATTCCTGAGGTACCAACTCCACAAAGTGCCGGACTATTAG

Protein sequence

MILGHFRLRESHPQSLLSLISMAYALESTYLSLGKGERQPRKRAEPNKNGEQARPPIVIETTSTSELQTRAGEGVQVALLRLSLPEIVKIPPPLPVVPTNIGLFLRYQLHKVPDY

Homology

[Close]

BLAST of Csor.00g208520 vs. NCBI nr
Match: KAG6599070.1 (hypothetical protein SDJN03_08848, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 227 bits (578), Expect = 9.05e-75
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MILGHFRLRESHPQSLLSLISMAYALESTYLSLGKGERQPRKRAEPNKNGEQARPPIVIE 60
           MILGHFRLRESHPQSLLSLISMAYALESTYLSLGKGERQPRKRAEPNKNGEQARPPIVIE
Sbjct: 1   MILGHFRLRESHPQSLLSLISMAYALESTYLSLGKGERQPRKRAEPNKNGEQARPPIVIE 60

Query: 61  TTSTSELQTRAGEGVQVALLRLSLPEIVKIPPPLPVVPTNIGLFLRYQLHKVPDY 115
           TTSTSELQTRAGEGVQVALLRLSLPEIVKIPPPLPVVPTNIGLFLRYQLHKVPDY
Sbjct: 61  TTSTSELQTRAGEGVQVALLRLSLPEIVKIPPPLPVVPTNIGLFLRYQLHKVPDY 115

[Close]

BLAST of Csor.00g208520 vs. NCBI nr
Match: KAG6601737.1 (hypothetical protein SDJN03_06970, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 1.02e-19
Identity = 53/79 (67.09%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 33  LGKGERQPRKRA---EPNKNGEQARPPIVIETTSTSELQTRAGEGVQVALLRLSLPEIVK 92
           LGKG RQ RK     EPNKNGEQARP IV ETTSTSELQ RAGEGV+VALLRLSLP+ VK
Sbjct: 57  LGKGLRQGRKTTKEKEPNKNGEQARPTIVTETTSTSELQARAGEGVKVALLRLSLPQTVK 116

Query: 93  IPPPLPVVPTNIGLFLRYQ 108
           IP       + +G F  YQ
Sbjct: 117 IPSTAST--SGLGAFFDYQ 133

[Close]

BLAST of Csor.00g208520 vs. NCBI nr
Match: KAG6585909.1 (hypothetical protein SDJN03_18642, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 2.58e-18
Identity = 57/108 (52.78%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 8   LRESHPQSLLSLISMAYALESTYLSLGKGERQPRKRA---EPNKNGEQARPPIVIETTST 67
           L ++H  SL    S+   L    L +G   RQ RK     EPNKNGEQARP IV ETTST
Sbjct: 75  LMKNHQASLQG--SLILLLSCPPLFVGINLRQGRKTTKEKEPNKNGEQARPTIVTETTST 134

Query: 68  SELQTRAGEGVQVALLRLSLPEIVKIPPPLPVVPTNIGLFLRYQLHKV 112
           SELQ RAGEGV+VALLRLSLP+ VKIP       TN       ++H V
Sbjct: 135 SELQARAGEGVKVALLRLSLPQTVKIPSTASTSGTNSTKCRTIRIHHV 180

[Close]

BLAST of Csor.00g208520 vs. NCBI nr
Match: KAG6588553.1 (hypothetical protein SDJN03_17118, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.7 bits (213), Expect = 3.99e-18
Identity = 49/62 (79.03%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 33  LGKGERQPRKRA---EPNKNGEQARPPIVIETTSTSELQTRAGEGVQVALLRLSLPEIVK 91
           LGKG RQ RK     EPNKNGEQARP IV ETTSTSELQ RA EGV+VALLRLSLPE VK
Sbjct: 57  LGKGLRQGRKTTKEKEPNKNGEQARPTIVTETTSTSELQARAEEGVKVALLRLSLPETVK 116

The following BLAST results are available for this feature:

BLAST of Csor.00g208520 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g208520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599070.1	9.05e-75	100.00	hypothetical protein SDJN03_08848, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6601737.1	1.02e-19	67.09	hypothetical protein SDJN03_06970, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6585909.1	2.58e-18	52.78	hypothetical protein SDJN03_18642, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6588553.1	3.99e-18	79.03	hypothetical protein SDJN03_17118, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g208520 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g208520 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g208520.m01	Csor.00g208520.m01	mRNA