Csor.00g208480 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGAAAGGTCCAGGTCTCTACTCCGACATCGGCAAGAGAGCTAGAGGTTGCTTCATTTCTTCTTCATTTTGTTGTTCCTCTTCTTTTTCTGTATGTAGTTCTCGTTGAAATGATTTTTTTTTTCCTTTTTTCCGTAGATCTTCTCTACAAGGATTACCAGAGCGACCATAAATTCACCGTCACTACTTACACTTCCGGTGGAGTTGTGAGTTTCTGATTATTTTTTTTTATTGGATTTACAATCGGATTTGTTGCTTTTTCTTTGTTCTTTATTGCAATCGCTAATTGTTGTTCATTCTTTATGGTGTAATTGCTTTTTGTATCGCTTGTGTTTGGTTGACCGACTTTCTGACCGACGGACCGACTGACCTCGCTTCTTTCTATGTAATTAATATTCGTTTCTTGGTAGGTAGGTCGGAAGGCTGTAATCTTTGTTTCTAGATTCAAGAATTTATTTCTACTAGTATGTCATTTTCAGACCCGATGTCGATCTTGTTTTTAATCTCTCTGTACCGAGTGCTTAAGAGCTGAAGGATTCTTGGAATTTGTGTCAAGTTTGTTTCGTAATTTTTGTGGAGGTTGTTGAACAACGAATTGAAAATATTTAGATTTAGCAATGTACGTTTTTTTTTTTTTTTTTTCTTGGCGGTTGTTCGTATTTCATTTTCTTCTTCCAAGGAATTGGGACATTCGTTATTGCGTTAGATAGGTTGCACGGTTTTCTTAAATTACTTCAGCCGAATGCAAATTTTTGACAGGCACTCCCAAGGGAAATCCCCTTTTTTGCCACTCGCATAAAATTTTTTGGTATATCGAATACTACCATTTGTCTAAACAATCTCTTACAAAGCTCTAATTTCTCTAAGTTTTTCATTATGTTTAGATATTGAAAAGTTGTCATTTTTTATGTAAAATACTAGTGTATATAGTAATTGCCATAATCTAATTTACGACGTAATGTATGGCCAACTTTTATGCATTTGTTATGAGACAAACGTTCGATTCTCTGACCCTTAAATGATGCAGTATGGCACGTATCTTTAATCCTTTGTGTTTCTCTTCTATTATTGCTGAACTTTATCTTTAATTCGCTTTTCAGGCTATCAGTTCAACTGGAGTTAAGAAAGGTGAGGTATTTTTGGCAGATGTAAGCACTCAGCTAAAGAACAACAATATCACAACTGATGTAAAAGTTGACACCAACTCCAATGTAAGTTAGTTTCACTGAATAAGTTTGTATAATGAAATGCTCAGAAGTGTTCTGCATGTAAGTAGTTTCCTTTGGATTGTATTAGAAAAAAAAAACGCTTGTGTAGCTGCTGATGTGAAGCCTTAAAGCTAAAAGGTTATTTTTGCTTTTAATATAGGTTCACACTACTATTACTATTGATGAACCTGCTCCAGGATTGAAGACAATTTTCAGCTTTCGTGTTCCTGACCAGAGATCTGGAAAGGTAGTTATCAATTTACTTCTCAAATTATGTAATGTTACTGGGACAAAACAAATTGATGATCTCCTGTAGTCTGCTAATAATTGGTAGAAACATGGATGGCTTCTCCACCCCCATCCTTACCCCCCAAAAGAACTCCAGTAACTACCCAAGTTCACCGCTGGTAGGCATTGCCCCCTTTGGGTTTTCCTTACAGATTTTCCCTTAAGATTTTAAAATGCGTCTACTAGGGAGGGTTTCACACACTTATAAGGAATACTTTGTTCCCCTTTCCAACTGATGTGGGATTTTACAACTCCCATCTTTTGAGAAATTCCTGGGGTGTACATGGGGATAGAGTCTCTCATGGATAATAATTTTTGGAACGAGTTTCTTGCAAGCATTTTTTCCCTGTTACTATATAATTTTATTGAAAGAAAATAGTTAAATTGGTTTATATTTTTCAACTATTTTGAACATTTAATAATTTTTATGCATTATTTTACTCTTTTAGTTTTTTAATGTGCATACTGCATATTAGACTGTATGTTAAAGTAGATTGAAGTATAACTATCGTGCGACATTACTTATAGAACAATTTGCACCCCTAGTATGGGCACAGATTGAAATTCTTGCAAGCATCTGGTTTATGATCGCCTTTTCAGGTTGAACTCCTATATCAACATGAATATGCTGGAATAAGCACTGGCATTGGTCTGACTGCCAGCCCCATTGTTAACTTCTCGGGCGTTGTTGGAAATGACAAACTCTCACTTGGGACGGATTTGTCATTCGACACTGCTTCAGGAAACCTCACGAAATTGAACGCTGGCTTGAGTTACACTCACTCTGATCTTATTGCGGCCCTTACCTTGTAAGAAAACAAGCTCTTTCCTTTTACGTCTTTCTTTTATACTGTTGAATTCATTCCAACAGTTATTTTTTATCCTCATTCTCAAAATATTATAACAAAAATGGAACACTTTTACTTGGATAAATCAATTTTTAGCGAGAGATTTGTCAAGAAAGGATTCTTTCTATCAGAAGATTTATGGCTTAATTTGGAGATCTTTCAGAACAATGTTCTTTCCTATAGAACTTATGGGCCCTTCTGTCATAACCTGGACCATACAAATGATATGCATTTTGTTGTTGACGGTTTACAGGAATGACAAAGGTGATGCTGTCACTGCTTCCTATTACCACCTTGTTAGCCCATTGAGCAACACGGCGGTTGGTGCCGAGCTGTCCCACAGCTTCTCGAGCAACGAGAATACTCTTACAATAGGCACACAGCATGCTCTTGATCACCTGACATCAGTGAAGGCTCGGGTGAACAACTATGGTAGGACAAGTGCTCTAATCCAGCACGAATGGCGCCCAAAATCGTTGTTCACCATTTCAGGAGAAGTCGACACACGGGCTATTGAAAAGAATGTGAAGATCGGTCTGGCCTTGGCTCTTAAGCCTTAGGAGATCCGTTCCTCCTTGGAGTTTACTGGAGAGTTAAATAAGCTTTTAAATAGCGTCGTCGTAGACAGTTGATTTTTCATATTATCAATTTTTCCCTGCCCCAACTGGAACATTGGTAGGTCCTTTTCCGCAATATTTTCAATTAGTTGCATCTGTTGGAGGTCCCGGGGGATTGTGAAAATAATTGACACGAACAGCCACTGTTATTTCGGTGGCGATGTGAACTTTACGGTGGTTTTTTTCCTTAAAATTCAATGGAAGTCTTTTTGCTTCATGAAGGTGTTGTTAACGTCTGAAGGATCACACCACCAGACCAAGACCACCATAGTTTTGGGATCAACGTCAAAAATTGGCCACAGTGGTTTGTGGTTTGGTTATGGCGGAAACTGACATATCATATGGTACCTTTTGAGTTCTCTTTCGCTGTTGAAGCAAAGCCAAATTCTGTTTTCCTAATTTGGGCAATATATTGAGTGAATGTCTGGAGTTATATGTGTATTATGTAATTTGTTCTTAGTGGTAAAGTGTCTCTCGAGCCTCTTTTTTTTCTTCTCATCAAAGTTATTTCACCTATGGGAAGGAAGAAGGGGGAACAAGTACACTTGAAGAACACAAGTACAACGAAGAGTTGTATGATGCGTTCACAGAAGTTGAATCGCTTCTGAAAGTCTAGTAATATCATACGTCATATTTTTGCTTCATTTTACATTTTCATTTGATTTATAGAATTAAAAAATAACTATTAAAATTTGTTTCACTTAAAAAAAATGACATAATATATATATATATAAAAAAAAGAATATACATTTTTTTTCTTATTTTAAAATAATAATTAAATAGTATAATATTGGATATTTTTCTTATTTGGAATGGTTCGTTAATATGTGAAAGTGGAAAAATTCCAACATATGCTACAAATAATTTAAAGTTATCAAAATTTATTAATAACTTTTAAATTATTTTTTAATAATTTAAATTAAAAACATATAATGGGAATAGGCTGAGAAAAAAAAAAAAAAATTACAATCCATCCACAATGGCCCAATAATTCAGCCCAAATTATCAAATAAAATAATTAAAAAAAGATTAAAAGAAAAAAAAAAAAAAAAAAGGAGGAAACCTAGGTGTGCCCAGTCCCCACCCCGTTCATCTTCCTCACTCTCTCCTGGAGTGCTCCATCTCTTCTTCACGCCGGTTCCTCCCTTTCAGCAGCTCCGCGCCGCCGCTGTCGTCACCGTTCTTTTTCTTCCTGCTCGCCCCTCCTCCTCTCAATTTGTTACTGGTGTCTGTCTGACATTCCCGTCGTCCCAAATCGGACAGAGTTCACCTGTCGACGAGGACAAGACTGCACCATCTCCGGCGGCTGGGAATGCTGTTCTGACGGTACACATCCTTTGCTAGATCCGAATCTCCCTCCATTTCTCTCATTCTCTTTCTCTCTCTGTTAACTTTAGCTATTTCATTTCACTCTCTTGATTGGCCTATTCTGGTGCCGTAGCAGTGATGATTCTTTTTTCCTACTCGTGTTATTACTGCAAACACGATAAGAGAAATTTGTGTTTGTAAGTAAAACTATGGGAGTCTAGAAGTTGTGTATTGCAGTGTCGTGTTCAGAGTAGGAAAGAGGGATTTTATTTCTATTTTCGTGATTTGTATCTGTCTTCAAGTACATGTTCGATAATCTATTACGAAGACGATGCAGTCTCAACTATTACTTCCTACTTTCTTCATGATTAGTTTGATTTTTCACATTCCCTTACTTTTGGAGGTTTTCAGTTAACGATGAAATTCACGTTTTACTATCTATGATCGGCTTTATATCTCACGTTTGTTATATTAACTAATTTTTAGGGGCTTGATTGTAGAGAAAGAATGAAAAAAAGAGCTTAA ATGGGGAAAGGTCCAGGTCTCTACTCCGACATCGGCAAGAGAGCTAGAGATCTTCTCTACAAGGATTACCAGAGCGACCATAAATTCACCGTCACTACTTACACTTCCGGTGGAGTTGCTATCAGTTCAACTGGAGTTAAGAAAGGTGAGGTATTTTTGGCAGATGTAAGCACTCAGCTAAAGAACAACAATATCACAACTGATGTAAAAGTTGACACCAACTCCAATGTTCACACTACTATTACTATTGATGAACCTGCTCCAGGATTGAAGACAATTTTCAGCTTTCGTGTTCCTGACCAGAGATCTGGAAAGGTTGAACTCCTATATCAACATGAATATGCTGGAATAAGCACTGGCATTGGTCTGACTGCCAGCCCCATTGTTAACTTCTCGGGCGTTGTTGGAAATGACAAACTCTCACTTGGGACGGATTTGTCATTCGACACTGCTTCAGGAAACCTCACGAAATTGAACGCTGGCTTGAGTTACACTCACTCTGATCTTATTGCGGCCCTTACCTTGAATGACAAAGGTGATGCTGTCACTGCTTCCTATTACCACCTTGTTAGCCCATTGAGCAACACGGCGGTTGGTGCCGAGCTGTCCCACAGCTTCTCGAGCAACGAGAATACTCTTACAATAGGCACACAGCATGCTCTTGATCACCTGACATCAGTGAAGGCTCGGGTGAACAACTATGGTAGGACAAGTGCTCTAATCCAGCACGAATGGCGCCCAAAATCGTTGTTCACCATTTCAGGAGAAGTCGACACACGGGCTATTGAAAAGAATGTGAAGATCGACCAAGACCACCATAGTTTTGGGATCAACGTCAAAAATTGGCCACAGTGGTTTGTGGTTTGGTTATGGCGGAAACTGACATATCATATGCAGCTCCGCGCCGCCGCTGTCGTCACCGTTCTTTTTCTTCCTGCTCGCCCCTCCTCCTCTCAATTTGTTACTGGTGTCTGTCTGACATTCCCGTCGTCCCAAATCGGACAGAGTTCACCTGTCGACGAGGACAAGACTGCACCATCTCCGGCGGCTGGGAATGCTGTTCTGACGGGGCTTGATTGTAGAGAAAGAATGAAAAAAAGAGCTTAA ATGGGGAAAGGTCCAGGTCTCTACTCCGACATCGGCAAGAGAGCTAGAGATCTTCTCTACAAGGATTACCAGAGCGACCATAAATTCACCGTCACTACTTACACTTCCGGTGGAGTTGCTATCAGTTCAACTGGAGTTAAGAAAGGTGAGGTATTTTTGGCAGATGTAAGCACTCAGCTAAAGAACAACAATATCACAACTGATGTAAAAGTTGACACCAACTCCAATGTTCACACTACTATTACTATTGATGAACCTGCTCCAGGATTGAAGACAATTTTCAGCTTTCGTGTTCCTGACCAGAGATCTGGAAAGGTTGAACTCCTATATCAACATGAATATGCTGGAATAAGCACTGGCATTGGTCTGACTGCCAGCCCCATTGTTAACTTCTCGGGCGTTGTTGGAAATGACAAACTCTCACTTGGGACGGATTTGTCATTCGACACTGCTTCAGGAAACCTCACGAAATTGAACGCTGGCTTGAGTTACACTCACTCTGATCTTATTGCGGCCCTTACCTTGAATGACAAAGGTGATGCTGTCACTGCTTCCTATTACCACCTTGTTAGCCCATTGAGCAACACGGCGGTTGGTGCCGAGCTGTCCCACAGCTTCTCGAGCAACGAGAATACTCTTACAATAGGCACACAGCATGCTCTTGATCACCTGACATCAGTGAAGGCTCGGGTGAACAACTATGGTAGGACAAGTGCTCTAATCCAGCACGAATGGCGCCCAAAATCGTTGTTCACCATTTCAGGAGAAGTCGACACACGGGCTATTGAAAAGAATGTGAAGATCGACCAAGACCACCATAGTTTTGGGATCAACGTCAAAAATTGGCCACAGTGGTTTGTGGTTTGGTTATGGCGGAAACTGACATATCATATGCAGCTCCGCGCCGCCGCTGTCGTCACCGTTCTTTTTCTTCCTGCTCGCCCCTCCTCCTCTCAATTTGTTACTGGTGTCTGTCTGACATTCCCGTCGTCCCAAATCGGACAGAGTTCACCTGTCGACGAGGACAAGACTGCACCATCTCCGGCGGCTGGGAATGCTGTTCTGACGGGGCTTGATTGTAGAGAAAGAATGAAAAAAAGAGCTTAA MGKGPGLYSDIGKRARDLLYKDYQSDHKFTVTTYTSGGVAISSTGVKKGEVFLADVSTQLKNNNITTDVKVDTNSNVHTTITIDEPAPGLKTIFSFRVPDQRSGKVELLYQHEYAGISTGIGLTASPIVNFSGVVGNDKLSLGTDLSFDTASGNLTKLNAGLSYTHSDLIAALTLNDKGDAVTASYYHLVSPLSNTAVGAELSHSFSSNENTLTIGTQHALDHLTSVKARVNNYGRTSALIQHEWRPKSLFTISGEVDTRAIEKNVKIDQDHHSFGINVKNWPQWFVVWLWRKLTYHMQLRAAAVVTVLFLPARPSSSQFVTGVCLTFPSSQIGQSSPVDEDKTAPSPAAGNAVLTGLDCRERMKKRA Homology
BLAST of Csor.00g208480 vs. ExPASy Swiss-Prot
Match: P42056 (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum OX=4113 PE=1 SV=2) HSP 1 Score: 437.6 bits (1124), Expect = 1.4e-121 Identity = 218/268 (81.34%), Postives = 247/268 (92.16%), Query Frame = 0
BLAST of Csor.00g208480 vs. ExPASy Swiss-Prot
Match: P42055 (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum OX=4113 PE=1 SV=2) HSP 1 Score: 407.9 bits (1047), Expect = 1.2e-112 Identity = 192/267 (71.91%), Postives = 241/267 (90.26%), Query Frame = 0
BLAST of Csor.00g208480 vs. ExPASy Swiss-Prot
Match: P42054 (Outer plastidial membrane protein porin OS=Pisum sativum OX=3888 GN=POR1 PE=1 SV=2) HSP 1 Score: 379.0 bits (972), Expect = 6.0e-104 Identity = 184/268 (68.66%), Postives = 224/268 (83.58%), Query Frame = 0
BLAST of Csor.00g208480 vs. ExPASy Swiss-Prot
Match: Q9SRH5 (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana OX=3702 GN=VDAC1 PE=1 SV=3) HSP 1 Score: 368.2 bits (944), Expect = 1.1e-100 Identity = 179/268 (66.79%), Postives = 226/268 (84.33%), Query Frame = 0
BLAST of Csor.00g208480 vs. ExPASy Swiss-Prot
Match: Q6K548 (Mitochondrial outer membrane protein porin 1 OS=Oryza sativa subsp. japonica OX=39947 GN=VDAC1 PE=1 SV=3) HSP 1 Score: 358.2 bits (918), Expect = 1.1e-97 Identity = 175/265 (66.04%), Postives = 220/265 (83.02%), Query Frame = 0
BLAST of Csor.00g208480 vs. NCBI nr
Match: KAG6599066.1 (hypothetical protein SDJN03_08844, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 729 bits (1882), Expect = 3.71e-265 Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 0
BLAST of Csor.00g208480 vs. NCBI nr
Match: XP_022946189.1 (mitochondrial outer membrane protein porin of 36 kDa-like [Cucurbita moschata] >XP_023525774.1 mitochondrial outer membrane protein porin of 36 kDa-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 524 bits (1350), Expect = 1.38e-185 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
BLAST of Csor.00g208480 vs. NCBI nr
Match: KAG7030003.1 (hypothetical protein SDJN02_08348, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 524 bits (1350), Expect = 4.65e-185 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
BLAST of Csor.00g208480 vs. NCBI nr
Match: XP_022999729.1 (mitochondrial outer membrane protein porin of 36 kDa-like [Cucurbita maxima]) HSP 1 Score: 524 bits (1350), Expect = 2.76e-184 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
BLAST of Csor.00g208480 vs. NCBI nr
Match: XP_022151340.1 (mitochondrial outer membrane protein porin of 36 kDa [Momordica charantia]) HSP 1 Score: 506 bits (1304), Expect = 1.40e-178 Identity = 256/268 (95.52%), Postives = 264/268 (98.51%), Query Frame = 0
BLAST of Csor.00g208480 vs. ExPASy TrEMBL
Match: A0A6J1G335 (mitochondrial outer membrane protein porin of 36 kDa-like OS=Cucurbita moschata OX=3662 GN=LOC111450345 PE=3 SV=1) HSP 1 Score: 524 bits (1350), Expect = 6.70e-186 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
BLAST of Csor.00g208480 vs. ExPASy TrEMBL
Match: A0A6J1KHX7 (mitochondrial outer membrane protein porin of 36 kDa-like OS=Cucurbita maxima OX=3661 GN=LOC111493988 PE=3 SV=1) HSP 1 Score: 524 bits (1350), Expect = 1.34e-184 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
BLAST of Csor.00g208480 vs. ExPASy TrEMBL
Match: A0A6J1DAW6 (mitochondrial outer membrane protein porin of 36 kDa OS=Momordica charantia OX=3673 GN=LOC111019304 PE=3 SV=1) HSP 1 Score: 506 bits (1304), Expect = 6.77e-179 Identity = 256/268 (95.52%), Postives = 264/268 (98.51%), Query Frame = 0
BLAST of Csor.00g208480 vs. ExPASy TrEMBL
Match: A0A0A0KDL1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G404150 PE=3 SV=1) HSP 1 Score: 504 bits (1297), Expect = 8.69e-177 Identity = 253/268 (94.40%), Postives = 264/268 (98.51%), Query Frame = 0
BLAST of Csor.00g208480 vs. ExPASy TrEMBL
Match: A0A1S3C4K2 (mitochondrial outer membrane protein porin of 36 kDa-like OS=Cucumis melo OX=3656 GN=LOC103496403 PE=3 SV=1) HSP 1 Score: 500 bits (1288), Expect = 1.85e-176 Identity = 251/268 (93.66%), Postives = 264/268 (98.51%), Query Frame = 0
BLAST of Csor.00g208480 vs. TAIR 10
Match: AT3G01280.1 (voltage dependent anion channel 1 ) HSP 1 Score: 368.2 bits (944), Expect = 7.5e-102 Identity = 179/268 (66.79%), Postives = 226/268 (84.33%), Query Frame = 0
BLAST of Csor.00g208480 vs. TAIR 10
Match: AT5G15090.1 (voltage dependent anion channel 3 ) HSP 1 Score: 353.6 bits (906), Expect = 1.9e-97 Identity = 171/268 (63.81%), Postives = 219/268 (81.72%), Query Frame = 0
BLAST of Csor.00g208480 vs. TAIR 10
Match: AT5G15090.2 (voltage dependent anion channel 3 ) HSP 1 Score: 353.6 bits (906), Expect = 1.9e-97 Identity = 171/268 (63.81%), Postives = 219/268 (81.72%), Query Frame = 0
BLAST of Csor.00g208480 vs. TAIR 10
Match: AT5G67500.1 (voltage dependent anion channel 2 ) HSP 1 Score: 260.0 bits (663), Expect = 2.9e-69 Identity = 128/279 (45.88%), Postives = 188/279 (67.38%), Query Frame = 0
BLAST of Csor.00g208480 vs. TAIR 10
Match: AT5G67500.2 (voltage dependent anion channel 2 ) HSP 1 Score: 245.4 bits (625), Expect = 7.4e-65 Identity = 128/306 (41.83%), Postives = 188/306 (61.44%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|