Csor.00g207340 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g207340
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr06: 2608837 .. 2610915 (+)
RNA-Seq ExpressionCsor.00g207340
SyntenyCsor.00g207340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTGTTCTGGTAGCTGTGGAGCCATAATGGGTGGCCTAAGATGCTGTGGGGGTGGCTGTGGAGGTTGCAGCGGCAGTAACTGAGGCAGGGAAGTGCAGGTAGAGGATTAGAAGCTAGCTAGCTAGCATGATGCACCACCTAAAACATGTGTGTAGTTGAAGTTGCAGTAGGGTTCTGAGGAATAATCTCAGTTAAACTGGTTGCTTGACCCTACACGAATGTCCGAATGCCGCAACTAAAATGTTCTATACAAATTGTTGTAACGGAAGTGGAAGTAACATCGATCGTACTCACATACCCACAAACATAAATTAAACAAAGAGACGTAAAGATTTACGGATTCGGAAAAAAAGAAATTCTTTTACATCCACTAGTAGCAACAAATCTCAATAATTAAAGTGCTTACAAAGTGTATTTCGCTATAATATCTCCTCCTCCCAAATCTCCCTTAGCAATTACAAGATGACACTCAAATTCAATCAAACTCTATATATCTTAATCATCCTAGACAACCTTTTATAAAGACGTAGAATTATTTACATGAATCAAAAGGGTTATGTTACGACAATAACTTCATCAAAGAAGTCACAGACTCATCAATCATCAAACTATGGTTGAATGTAATGGCAGAGGGAGATCTTCTAGGTTCCGTTTAGCATAAGTTAGAAGGTTATTTAATGAACTGGCCAAGATCCTCTGCTGTATTTTCCATATATTATATATAACCAAACTTAGGCAGCTAGCCTGTCAAACAAATGAATACTGTTCAACCTTGAAGAAGTTACCAGAAGTAATAATGTTACTGAGAAGCCAACAATTGAAGAGACAGTCATTTCAGAAGGGTATGCCTACCAGCTTTGGAGATAAATGCATATTTACAATGAATCTTATGCTAAATCTTCCCAATAACATGCCAAAACAGCATATTTTTTGGATTACCACATAAAGGAAGGCCAAGATAAGTAAAGGGCTAACAACTATGGTTATTTTATAGTTACTCGCTTTAACATTTTTTCCTGTGAGATTCCCGTCGGTTGGAGAGAGGAATGAAACATTTTTTATAAGGGTGTGGAAACCTTTTCCTATCATACGCGTTTTAAGATCTTGAGGGAAAGCTCTTGAAAAGAAAGCCCAAAGAAGATAATATCAGCAAACGATGAGCTTGAGCTGTTACAGATGATATCAGAGCTGAGTATGGAGTGGTGTGCTAGCGAGAACGTTGGACTCTCAAGGGAGGTGAATTGTGGGATCCCACATCGGTTGAAGATTATTACAAATGGTACTACAATGGGACACAGGGCGGTGTATTAATGCTGAGCCTCAAAGGGGTGGATTGTGAGATTCTACATTGATTAGAGATTACAAATGGTATCAGAGTCAATCACAAGGTGGTGTGCCAACGATGACACTAGGCTCCTAAGAGGGATGGATTGTGAGATCCCATATTAGTTGGAGAGGTGGACGAAGTTTAAGTGGAAACCTGTATGTGGGGAAGGGATAATCACACTAAACATATATATATATATATGACATAATTTAAATATTAAATATTTTTCTATTTTTGTTTAATTTGAATTTTATTTATTTATTTTTAACAACAAAACTGATTTAATTGATATAAAATGTATAACAACTATTTTTTTTCTTTAATTTGACATGAAAAAAAAAAAAAACATTTAATTATTTGGACGAAACATGTTTTCTTTTTTAACCTACGTTATGTCAGCTCAGCATAGTTAAAATACTTTGGATGCAAAAAATAAAAAATAAAAAGGAAAAAGAAAAAGGGCTTGCAGTTTAGCGGGTGAAGAGTCTGAAGTCTCAACAACAAACGGGCCACAAGACCGCGAAATTGACAAGGATCGTCTGTAGGTTGCTGCCTCAGTAGTCCATCCCCAGAACAGCCCGGAATTCTTGTCTACCACGGCTGCTCCCTCAATTCTCCATTGCCGCCGGTGAAATCTAATGGTCTATTAGCAATTAGCAGCAAGTATCTAATTCGGGGAGTTGCGTTGATTCAGCAAGGCGATTTGCTTCCGTCATTGAAGCCGGCGTTAGTCACTGCCGGCAGCTGA

mRNA sequence

ATGACCTGTTCTGGTAGCTGTGGAGCCATAATGGGTGGCCTAAGATGCTGTGGGGGTGGCTGTGGAGGTTGCTGCCTCAGTAGTCCATCCCCAGAACAGCCCGGAATTCTTGTCTACCACGGCTGCTCCCTCAATTCTCCATTGCCGCCGGTGAAATCTAATGGTCTATTAGCAATTAGCAGCAAGTATCTAATTCGGGGAGTTGCGTTGATTCAGCAAGGCGATTTGCTTCCGTCATTGAAGCCGGCGTTAGTCACTGCCGGCAGCTGA

Coding sequence (CDS)

ATGACCTGTTCTGGTAGCTGTGGAGCCATAATGGGTGGCCTAAGATGCTGTGGGGGTGGCTGTGGAGGTTGCTGCCTCAGTAGTCCATCCCCAGAACAGCCCGGAATTCTTGTCTACCACGGCTGCTCCCTCAATTCTCCATTGCCGCCGGTGAAATCTAATGGTCTATTAGCAATTAGCAGCAAGTATCTAATTCGGGGAGTTGCGTTGATTCAGCAAGGCGATTTGCTTCCGTCATTGAAGCCGGCGTTAGTCACTGCCGGCAGCTGA

Protein sequence

MTCSGSCGAIMGGLRCCGGGCGGCCLSSPSPEQPGILVYHGCSLNSPLPPVKSNGLLAISSKYLIRGVALIQQGDLLPSLKPALVTAGS
Homology
[Close]
BLAST of Csor.00g207340 vs. NCBI nr
Match: KAG6596621.1 (hypothetical protein SDJN03_09801, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182 bits (462), Expect = 6.75e-58
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MTCSGSCGAIMGGLRCCGGGCGGCCLSSPSPEQPGILVYHGCSLNSPLPPVKSNGLLAIS 60
          MTCSGSCGAIMGGLRCCGGGCGGCCLSSPSPEQPGILVYHGCSLNSPLPPVKSNGLLAIS
Sbjct: 1  MTCSGSCGAIMGGLRCCGGGCGGCCLSSPSPEQPGILVYHGCSLNSPLPPVKSNGLLAIS 60

Query: 61 SKYLIRGVALIQQGDLLPSLKPALVTAGS 89
          SKYLIRGVALIQQGDLLPSLKPALVTAGS
Sbjct: 61 SKYLIRGVALIQQGDLLPSLKPALVTAGS 89

[Close]
BLAST of Csor.00g207340 vs. NCBI nr
Match: KAG7028158.1 (hypothetical protein SDJN02_09338, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172 bits (436), Expect = 7.08e-54
Identity = 88/93 (94.62%), Postives = 88/93 (94.62%), Query Frame = 0 

Query: 1  MTCSGSCGAIMGGLRCCGGGCGGC----CLSSPSPEQPGILVYHGCSLNSPLPPVKSNGL 60
          MTCSGSCGAIMGGLR CGGGCGGC    CLSSPSPEQPGILVYHGCSLNSPLPPVKSNGL
Sbjct: 1  MTCSGSCGAIMGGLRYCGGGCGGCSGTCCLSSPSPEQPGILVYHGCSLNSPLPPVKSNGL 60

Query: 61 LAISSKYLIRGVALIQQGDLLPSLKPALVTAGS 89
          LAISSKYLIRGVALIQQGDLLPSLKPALVTAGS
Sbjct: 61 LAISSKYLIRGVALIQQGDLLPSLKPALVTAGS 93

The following BLAST results are available for this feature:
BLAST of Csor.00g207340 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g207340 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6596621.16.75e-58100.00hypothetical protein SDJN03_09801, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7028158.17.08e-5494.62hypothetical protein SDJN02_09338, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Csor.00g207340 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g207340 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g207340.m01Csor.00g207340.m01mRNA