Csor.00g207310 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g207310
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionTatD related DNase
LocationCsor_Chr06: 2634067 .. 2635589 (+)
RNA-Seq ExpressionCsor.00g207310
SyntenyCsor.00g207310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAACACTGCGAATCATACCTAACCCACTTTCTTACTCGATCCACCTGCAATTAACTCCTTCCGACCTTTCTATCAATCCCTTATCGCACATATCGCGCTCAATTTTACAGGTGAGGCCTCCATTTCTTTCGATTGTTTACACTGTCCTTCTGCTTTTCTGGAATGAGATTATTGTGTTTAAATGCAGATGGTATGTTTAATTAAAGGAATCTTCCATGGGAAGCATTACCACGCAGCTCACATAGCCGCTATATTAAGCAGGGCTTGGAGTGCTGGGGTTGAGCGAATCGTTGTGAGTCTTTCTTTATGTTGTTTTTTTAATCTCTATTAGCTTGCGATTGTGAAGGATTATCCCCCATTTCCGGGTTCTTGATCTGTTGAGCTCTATTGGTAGATTGTGAATGTTCGTTCTGTGTTGATGTATTAGTACCAATCCAACTTATGGTGGTTGATAAAATCTATCATCATTCAGATTTAATTTCAATTTTCAATCTCTTTGAATACTTCTTTGAACTCTTCCACGATTAGGTAAGTTTGAGATCCCACTTCGGTTGGGGAGGAGAAGGAAACATTCTTTATATGTGTGTGGAAATATCTTCGATATGAACCAAGAGATATCAATTATAAATTTTGGGTGGATCATAATTTAAAGTAATTTAGAATTGATGTTTCTTTGTGAAAGTTACAACTCTTGAAAAGCCTCATGGAAGGTTAAGAGTTTTCATTTTGAGGCTATATAATGTCATTATGTTATCTTTCTAAGATAGACTTAGAAAATGTAGTAAAAAGAGCATTTGTGCTCTCTTTAGCCAATGGCTAAGTTCTTCTATGCAGTTTAGGTTGCACGTAGAATCATTCAAGTTCGACATGATGAATTTTGCTTATGGAGTGATTCGAATCTCAAACAGCTGTTCCTGCCTTGAGATATTTTTTATCAACAAGAATCATTCAAGCTAGACATGATCAATCTTGCTTGTAGAGTGATTCGAATCTCAAACAAGTATTTTTGCCTTGAGATATTCAATCAACAAGATGATCTGAATCTTACTCTCCTAATAGTGATTCCATATCATTTGGTATCGGAGCTTTTCTCCTAAGAAGTGGGTTTGAGCCATGAGAGTAAGCTTAGAATTCTTTTTAGTACAAGAAATTCGAAGGGATAAAAAAAGCATGGATTATGTTACAAAGATAATGTAGTTTATTACATAAACCAAAAGCAAACATCACAGTTATCTTTATACAAACCCACAAGCCAAGCATCTTTGTTCAGTAAAAATTGCTTATGAATTTCTGAATTTAAACAACCAAACACTAGAGTTCATAGACATTCTTCTTATTCTACATTGAGGGTCACATACAGAGTGCAGAATTCATACTTTTGATGCTCTTATTCTTCAAACAAACCCTTTTGTTTACTGCAATAACTTCATACTGGATATCTGTTTGGATGAATCTTTTGTTTCTCTCAGCTACCTCTCATTATGAGATGCAGAACAGAGAGATAAGAATCATCATATAG

mRNA sequence

ATGGGAACACTGCGAATCATACCTAACCCACTTTCTTACTCGATCCACCTGCAATTAACTCCTTCCGACCTTTCTATCAATCCCTTATCGCACATATCGCGCTCAATTTTACAGATGGTATGTTTAATTAAAGGAATCTTCCATGGGAAGCATTACCACGCAGCTCACATAGCCGCTATATTAAGCAGGGCTTGGAGTGCTGGGGTTGAGCGAATCGTTAACAGAGAGATAAGAATCATCATATAG

Coding sequence (CDS)

ATGGGAACACTGCGAATCATACCTAACCCACTTTCTTACTCGATCCACCTGCAATTAACTCCTTCCGACCTTTCTATCAATCCCTTATCGCACATATCGCGCTCAATTTTACAGATGGTATGTTTAATTAAAGGAATCTTCCATGGGAAGCATTACCACGCAGCTCACATAGCCGCTATATTAAGCAGGGCTTGGAGTGCTGGGGTTGAGCGAATCGTTAACAGAGAGATAAGAATCATCATATAG

Protein sequence

MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHISRSILQMVCLIKGIFHGKHYHAAHIAAILSRAWSAGVERIVNREIRIII
Homology
BLAST of Csor.00g207310 vs. NCBI nr
Match: KAG6596624.1 (hypothetical protein SDJN03_09804, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159 bits (402), Expect = 5.45e-49
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0

Query: 1  MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHISRSILQMVCLIKGIFHGKHYHAAHIAAI 60
          MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHISRSILQMVCLIKGIFHGKHYHAAHIAAI
Sbjct: 1  MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHISRSILQMVCLIKGIFHGKHYHAAHIAAI 60

Query: 61 LSRAWSAGVERIVNREIRIII 81
          LSRAWSAGVERIVNREIRIII
Sbjct: 61 LSRAWSAGVERIVNREIRIII 81

BLAST of Csor.00g207310 vs. NCBI nr
Match: KAG7028161.1 (hypothetical protein SDJN02_09341 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145 bits (367), Expect = 2.56e-42
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1  MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHISRSILQMVCLIKGIFHGKHYHAAHIAAI 60
          MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHISRSILQMVCLIKGIFHGKHYHAAHIAAI
Sbjct: 1  MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHISRSILQMVCLIKGIFHGKHYHAAHIAAI 60

Query: 61 LSRAWSAGVERIV 73
          LSRAWSAGVERIV
Sbjct: 61 LSRAWSAGVERIV 73

BLAST of Csor.00g207310 vs. NCBI nr
Match: XP_022936739.1 (uncharacterized protein LOC111443234 isoform X2 [Cucurbita moschata])

HSP 1 Score: 137 bits (346), Expect = 3.17e-40
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 0

Query: 1  MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHISRSILQMVCLIKGIFHGKHYHAAHIAAI 60
          MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHI RSILQMVCLIKGI HGKHYHAAHIAA+
Sbjct: 1  MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHILRSILQMVCLIKGICHGKHYHAAHIAAV 60

Query: 61 LSRAWSAGVERIV 73
          LSRAW AGVERIV
Sbjct: 61 LSRAWIAGVERIV 73

BLAST of Csor.00g207310 vs. NCBI nr
Match: XP_022936731.1 (uncharacterized protein LOC111443234 isoform X1 [Cucurbita moschata])

HSP 1 Score: 137 bits (346), Expect = 3.37e-40
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 0

Query: 1  MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHISRSILQMVCLIKGIFHGKHYHAAHIAAI 60
          MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHI RSILQMVCLIKGI HGKHYHAAHIAA+
Sbjct: 1  MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHILRSILQMVCLIKGICHGKHYHAAHIAAV 60

Query: 61 LSRAWSAGVERIV 73
          LSRAW AGVERIV
Sbjct: 61 LSRAWIAGVERIV 73

BLAST of Csor.00g207310 vs. NCBI nr
Match: ONM27784.1 (TatD related DNase [Zea mays])

HSP 1 Score: 57.0 bits (136), Expect = 3.06e-07
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 17  LQLTPSDLSINPLSHISRSILQMVC-------LIKGIFHGKHYHAAHIAAILSRAWSAGV 73
           L L P  LS++P S ++ + ++ VC       + KGI+HGK  HAA I A+L+RAW+AGV
Sbjct: 129 LLLVPLSLSLSPSSRVACAAVRAVCCYCLEDGMFKGIYHGKQCHAADIPAVLARAWAAGV 188

BLAST of Csor.00g207310 vs. ExPASy TrEMBL
Match: A0A6J1F950 (uncharacterized protein LOC111443234 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443234 PE=4 SV=1)

HSP 1 Score: 137 bits (346), Expect = 1.53e-40
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 0

Query: 1  MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHISRSILQMVCLIKGIFHGKHYHAAHIAAI 60
          MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHI RSILQMVCLIKGI HGKHYHAAHIAA+
Sbjct: 1  MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHILRSILQMVCLIKGICHGKHYHAAHIAAV 60

Query: 61 LSRAWSAGVERIV 73
          LSRAW AGVERIV
Sbjct: 61 LSRAWIAGVERIV 73

BLAST of Csor.00g207310 vs. ExPASy TrEMBL
Match: A0A6J1F8B1 (uncharacterized protein LOC111443234 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443234 PE=4 SV=1)

HSP 1 Score: 137 bits (346), Expect = 1.63e-40
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 0

Query: 1  MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHISRSILQMVCLIKGIFHGKHYHAAHIAAI 60
          MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHI RSILQMVCLIKGI HGKHYHAAHIAA+
Sbjct: 1  MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHILRSILQMVCLIKGICHGKHYHAAHIAAV 60

Query: 61 LSRAWSAGVERIV 73
          LSRAW AGVERIV
Sbjct: 61 LSRAWIAGVERIV 73

BLAST of Csor.00g207310 vs. ExPASy TrEMBL
Match: A0A1D6F9F5 (TatD related DNase OS=Zea mays OX=4577 GN=100282974 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.48e-07
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 17  LQLTPSDLSINPLSHISRSILQMVC-------LIKGIFHGKHYHAAHIAAILSRAWSAGV 73
           L L P  LS++P S ++ + ++ VC       + KGI+HGK  HAA I A+L+RAW+AGV
Sbjct: 129 LLLVPLSLSLSPSSRVACAAVRAVCCYCLEDGMFKGIYHGKQCHAADIPAVLARAWAAGV 188

BLAST of Csor.00g207310 vs. ExPASy TrEMBL
Match: A0A1D6F9F8 (TatD related DNase OS=Zea mays OX=4577 GN=100282974 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.89e-07
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 17  LQLTPSDLSINPLSHISRSILQMVC-------LIKGIFHGKHYHAAHIAAILSRAWSAGV 73
           L L P  LS++P S ++ + ++ VC       + KGI+HGK  HAA I A+L+RAW+AGV
Sbjct: 129 LLLVPLSLSLSPSSRVACAAVRAVCCYCLEDGMFKGIYHGKQCHAADIPAVLARAWAAGV 188

BLAST of Csor.00g207310 vs. ExPASy TrEMBL
Match: A0A6J1DC11 (putative deoxyribonuclease TATDN1 OS=Momordica charantia OX=3673 GN=LOC111019331 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.38e-07
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 0

Query: 42 LIKGIFHGKHYHAAHIAAILSRAWSAGVERIV 73
          + KGI+HGK YHAA IAA+LSRAWSAGVERI+
Sbjct: 17 MFKGIYHGKQYHAADIAAVLSRAWSAGVERII 48

BLAST of Csor.00g207310 vs. TAIR 10
Match: AT3G52390.1 (TatD related DNase )

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 18/32 (56.25%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 42 LIKGIFHGKHYHAAHIAAILSRAWSAGVERIV 74
          + KG++HGK+ H   IA +L+RAWSAGV+RI+
Sbjct: 17 MFKGLYHGKNCHVPDIATVLNRAWSAGVDRII 48

BLAST of Csor.00g207310 vs. TAIR 10
Match: AT3G52390.2 (TatD related DNase )

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 18/32 (56.25%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 42 LIKGIFHGKHYHAAHIAAILSRAWSAGVERIV 74
          + KG++HGK+ H   IA +L+RAWSAGV+RI+
Sbjct: 20 MFKGLYHGKNCHVPDIATVLNRAWSAGVDRII 51

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6596624.15.45e-49100.00hypothetical protein SDJN03_09804, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7028161.12.56e-42100.00hypothetical protein SDJN02_09341 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022936739.13.17e-4094.52uncharacterized protein LOC111443234 isoform X2 [Cucurbita moschata][more]
XP_022936731.13.37e-4094.52uncharacterized protein LOC111443234 isoform X1 [Cucurbita moschata][more]
ONM27784.13.06e-0745.31TatD related DNase [Zea mays][more]
Match NameE-valueIdentityDescription
A0A6J1F9501.53e-4094.52uncharacterized protein LOC111443234 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1F8B11.63e-4094.52uncharacterized protein LOC111443234 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A1D6F9F51.48e-0745.31TatD related DNase OS=Zea mays OX=4577 GN=100282974 PE=4 SV=1[more]
A0A1D6F9F81.89e-0745.31TatD related DNase OS=Zea mays OX=4577 GN=100282974 PE=4 SV=1[more]
A0A6J1DC112.38e-0778.13putative deoxyribonuclease TATDN1 OS=Momordica charantia OX=3673 GN=LOC111019331... [more]
Match NameE-valueIdentityDescription
AT3G52390.11.4e-0556.25TatD related DNase [more]
AT3G52390.21.4e-0556.25TatD related DNase [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g207310.m02Csor.00g207310.m02mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016788 hydrolase activity, acting on ester bonds