Csor.00g206980 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g206980
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Mediator of RNA polymerase II transcription subunit 7
Location	Csor_Chr06: 2864720 .. 2866968 (+)
RNA-Seq Expression	Csor.00g206980
Synteny	Csor.00g206980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACAGCTACGTATCCGCCACCGCCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCCGATCGAAGGGACCTACGTGTGCTTTGGTAGCAACTACACTGTAAGATTTACTCTCGATTCCTTCTTCATCTCTCTGAATGCATCTTGAAATGTCATTTATATGTGAAGATTCGAATTTGATTTCACATTTTTTGTTGAATTCTTTTGGCTGTTGGAGTCTTGTCGAACTTTTCATTTTTAAATAGATAAGATTTTTTAAGAACGTATGCTAAGAATGGTTTTAGGGTTTTTAGTTCCGAGGTTGTTCGTCTCTGCTTCCGAAATCTTTCATAATCTCCGTTCAGTGTGGACATTTTCGAGTTAGATTCTTTATTTGATTTGATCGAACTGATAGTTTAAACAGTGTCATGATAATCACTGTGATTTTGTTCCTTTTTCCTGATTGTTCTGTTGTGATTTTAGACCGATGATGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGGTAAGTAGATTTAGTTTAGTTACCAGTGTTCCCAAATTTGGGTCAGAATTTGTTCTCCATCAGTTGTTTTTCTATTTGATAAGAATCGCAATTATCCTCTCAAGTAAGGCAAATTTTATGCTCAAGTAATTATTCGTTTGATTTCTTAGATCTGTGGTGGTCTCTGTTTTGGTTCGGGGTAAGAATAATGCATGTATTGGTAGCCTCCAAGGGGTAGCACCATTGGCTAAGGCTCACGTTCTCTAAGTACACTTACTCAAAGTCACATGTTTGAATCTCTGGTGTAGATTTTTAAGGAAAACTCTGATGTCTTCAGAGTTTGGGCCTTGGGGCTGGCGTGGATGCCAAAGGGAATTGGGGTTTTATGATCCATCCCCAAGAATAGGTAAAAGAAGATTTGATGAAATTACTCACACATGAAACGAGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTGACACTGACATGTGTGCACTCGCTCGTGCCCATGTAGATCTCTTCCTGTCGTCATTTTTAACCACGAAAACTTGGCTTTGCAATTGAAACTAGGACTGCAGTCTTCAGGCAACTCGTATTTAAGAAAAAAAATAATCTTCCATCCTTTGGGGCGTACTCTAAAAGAAGTCAAACCTATTGCAAATATTTCTCCTAAGCTCTGAGCACGGAGTGTCATTGCTTTGAAGTCCTGTTAAAAGAAGAATACAAATGTTTGGGACATTCCTATTTCTATTGTCGTGGAAGAAACGAATCAAATTCCTGTTCGTGAAAACATTTGAAAATGTATTTAAAGACATGAAAATGTGTAGTGGTAGTGGCTGTCATGTTCTTAATAGATTCCTCCTGTACGGTGTAAACAAAAGAGTCTCTCTACCTGCCACTTGCTCGATGAACTTGATTTTTGATTGCTTGGAGCAACACTCTCCCCTGCAGCCCTCCCTCCCAAGTAAAGTCTTTTACCTGACATTATTATTGGTGGTTCTTCCTCAGATTTTAAGAAGGAATTGAGATCTCTCAATAGGGAGCTTCAGCTTCACATCTTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCACAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGTGGTTTAGTTTTACACATTTAAACTGGACATATCGTATCGTCGAAATTATCTAATTGTCAGGTCTATCTTCCCTTGTAGGCTAGAGCTACACTCATTCATATACTAGAACTTCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGTATGTTGGTTCTGATCGATTATATTCATGTATGAATGTGTAATAACTTGTGCAATCAGCTACCCTTTCGTCACACGCCTTTTTTGGATTGAATGTCTACTTAGGATTTCTTGTCCCTTTATCCATAATCATCGTTTTGTTCTATCTTATTCTTGGTGGTTGAGACAAGGATGTGTTCTTATAAAATTTTCAGCCCATAATTCATCGTTCAAGGCTTGCTTCTGTTCTGGCTGATAACTTCTGCATCATCTCACTGATTATTTGCTACCTTTTAAAACACGTTTTGGCATAATTTTCTTGTCTAGGAGGAGAGAAGAAGCACAAAGACTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAG

mRNA sequence

ATGGCGACAGCTACGTATCCGCCACCGCCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCCGATCGAAGGGACCTACGTGTGCTTTGGTAGCAACTACACTACCGATGATGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGATTTTAAGAAGGAATTGAGATCTCTCAATAGGGAGCTTCAGCTTCACATCTTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCACAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGCTAGAGCTACACTCATTCATATACTAGAACTTCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGAGGAGAGAAGAAGCACAAAGACTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAG

Coding sequence (CDS)

ATGGCGACAGCTACGTATCCGCCACCGCCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCCGATCGAAGGGACCTACGTGTGCTTTGGTAGCAACTACACTACCGATGATGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGATTTTAAGAAGGAATTGAGATCTCTCAATAGGGAGCTTCAGCTTCACATCTTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCACAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGCTAGAGCTACACTCATTCATATACTAGAACTTCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGAGGAGAGAAGAAGCACAAAGACTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAG

Protein sequence

MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH

Homology

[Close]

BLAST of Csor.00g206980 vs. ExPASy Swiss-Prot
Match: Q9LYW3 (Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana OX=3702 GN=MED7A PE=1 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 6.4e-77
Identity = 141/167 (84.43%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDYS+NP SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+K ELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQRLL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of Csor.00g206980 vs. ExPASy Swiss-Prot
Match: Q9LZD7 (Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana OX=3702 GN=MED7B PE=1 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.0e-75
Identity = 139/167 (83.23%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKD+S+N  SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of Csor.00g206980 vs. ExPASy Swiss-Prot
Match: Q55DQ5 (Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum OX=44689 GN=med7 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-28
Identity = 66/150 (44.00%), Postives = 96/150 (64.00%), Query Frame = 0


Query: 17  KDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDFKKELRS 76
           K    N   AP  PP +   YV FG  Y+T D+LPSL+E G +QLYP+G +++   EL+ 
Sbjct: 134 KKIELNKPLAPPLPPKVGANYVQFGQTYSTVDMLPSLDESGAKQLYPKG-DIEPISELKK 193

Query: 77  LNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQ 136
           LNR +  + L+L + L+E P  Y  ++E+ISL+F N HHLLNS RPHQAR TL+ I+  Q
Sbjct: 194 LNRSILFNYLQLLETLIENPKNYQSKIEDISLLFINFHHLLNSYRPHQARETLLSIMNEQ 253

Query: 137 IERRRQAVEDIKRRREEAQRLLMESLETLD 167
           I+++ Q+ E IK+  +  +  LM S + L+
Sbjct: 254 IKQKNQSNESIKKALDICKESLMNSFKNLN 282

[Close]

BLAST of Csor.00g206980 vs. ExPASy Swiss-Prot
Match: Q17MI0 (Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti OX=7159 GN=MED7 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.9e-27
Identity = 64/161 (39.75%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 8   PPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDD-VLPSLEEQGVRQLYPRGP 67
           PP  YY+LY D +     AP+PP PI+GTY  FG  ++T+D ++  LE QG ++LYP+  
Sbjct: 15  PPAQYYKLYTDENVRNNRAPKPPAPIQGTYQMFGQQFSTEDNIIRPLEAQGFKRLYPQ-- 74

Query: 68  NVDFKKELRSLNRELQLHILELADILVERPS--QYARRVEEISLIFKNLHHLLNSLRPHQ 127
           + D +KEL+ LN  L ++ L+L D+LV  P   Q A ++E+++L+F ++HHLLN  RPHQ
Sbjct: 75  HFDRRKELKKLNHSLLVNFLDLIDLLVHNPDSPQRAEKIEDLNLLFVHIHHLLNEFRPHQ 134

Query: 128 ARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETL 166
           AR TL  ++ELQ  +R++  +  +   E+ + ++  +  +L
Sbjct: 135 ARETLRVMMELQKRQRQETTQRFQNHLEKVREMVNNAFASL 173

[Close]

BLAST of Csor.00g206980 vs. ExPASy Swiss-Prot
Match: Q7PR68 (Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles gambiae OX=7165 GN=MED7 PE=3 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 4.8e-24
Identity = 62/161 (38.51%), Postives = 99/161 (61.49%), Query Frame = 0


Query: 8   PPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDD-VLPSLEEQGVRQLYPRGP 67
           PP  Y  LY D +     AP+PP PI+  Y  FGS ++ DD ++  LE QG ++LYP+  
Sbjct: 15  PPAQYINLYTDENIRKNRAPKPPAPIQDAYTMFGSPFSNDDNIIRPLESQGFKRLYPQ-- 74

Query: 68  NVDFKKELRSLNRELQLHILELADILVERPS--QYARRVEEISLIFKNLHHLLNSLRPHQ 127
           + D +KEL+ LN  L ++ L+L D+LV  P   + A ++E++SL+F ++HHLLN  RPHQ
Sbjct: 75  HFDRRKELKKLNHSLLVNFLDLIDLLVHYPDSPRRAEKIEDLSLLFVHIHHLLNEFRPHQ 134

Query: 128 ARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETL 166
           AR TL  ++ELQ  +R +  +  +   E+ + ++  +  +L
Sbjct: 135 ARETLRVMMELQKRQRIETAQRFQNHLEKVREMVKNAFASL 173

[Close]

BLAST of Csor.00g206980 vs. NCBI nr
Match: XP_022937468.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita moschata] >KAG6596657.1 Mediator of RNA polymerase II transcription subunit 7b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028195.1 Mediator of RNA polymerase II transcription subunit 7b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330 bits (847), Expect = 4.51e-114
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Csor.00g206980 vs. NCBI nr
Match: XP_023539102.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328 bits (841), Expect = 3.70e-113
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELR LNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Csor.00g206980 vs. NCBI nr
Match: XP_023005907.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita maxima])

HSP 1 Score: 327 bits (837), Expect = 1.51e-112
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDYSQNPKSAPEPPP IEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Csor.00g206980 vs. NCBI nr
Match: XP_022151348.1 (mediator of RNA polymerase II transcription subunit 7a-like [Momordica charantia])

HSP 1 Score: 322 bits (826), Expect = 7.18e-111
Identity = 163/168 (97.02%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKDY QNPKSAPEPPPPIEGTY CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYACFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQI+RRRQAVEDIKRRREEAQRL MESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLFMESLETLDGH 168

[Close]

BLAST of Csor.00g206980 vs. NCBI nr
Match: XP_008443001.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis melo] >KAA0043764.1 mediator of RNA polymerase II transcription subunit 7a [Cucumis melo var. makuwa] >TYK25369.1 mediator of RNA polymerase II transcription subunit 7a [Cucumis melo var. makuwa])

HSP 1 Score: 321 bits (823), Expect = 2.06e-110
Identity = 162/168 (96.43%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKDY Q+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Csor.00g206980 vs. ExPASy TrEMBL
Match: A0A6J1FG49 (Mediator of RNA polymerase II transcription subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443847 PE=3 SV=1)

HSP 1 Score: 330 bits (847), Expect = 2.18e-114
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Csor.00g206980 vs. ExPASy TrEMBL
Match: A0A6J1KUF9 (Mediator of RNA polymerase II transcription subunit 7 OS=Cucurbita maxima OX=3661 GN=LOC111498770 PE=3 SV=1)

HSP 1 Score: 327 bits (837), Expect = 7.31e-113
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDYSQNPKSAPEPPP IEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Csor.00g206980 vs. ExPASy TrEMBL
Match: A0A6J1DBY3 (Mediator of RNA polymerase II transcription subunit 7 OS=Momordica charantia OX=3673 GN=LOC111019312 PE=3 SV=1)

HSP 1 Score: 322 bits (826), Expect = 3.48e-111
Identity = 163/168 (97.02%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKDY QNPKSAPEPPPPIEGTY CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYACFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQI+RRRQAVEDIKRRREEAQRL MESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLFMESLETLDGH 168

[Close]

BLAST of Csor.00g206980 vs. ExPASy TrEMBL
Match: A0A5A7TKB8 (Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005090 PE=3 SV=1)

HSP 1 Score: 321 bits (823), Expect = 9.97e-111
Identity = 162/168 (96.43%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKDY Q+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Csor.00g206980 vs. ExPASy TrEMBL
Match: A0A0A0LBQ7 (Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis sativus OX=3659 GN=Csa_3G791540 PE=3 SV=1)

HSP 1 Score: 321 bits (823), Expect = 9.97e-111
Identity = 162/168 (96.43%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKDY Q+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Csor.00g206980 vs. TAIR 10
Match: AT5G03220.1 (Mediator complex, subunit Med7 )

HSP 1 Score: 288.1 bits (736), Expect = 4.5e-78
Identity = 141/167 (84.43%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDYS+NP SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+K ELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQRLL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of Csor.00g206980 vs. TAIR 10
Match: AT5G03500.1 (Mediator complex, subunit Med7 )

HSP 1 Score: 283.1 bits (723), Expect = 1.5e-76
Identity = 139/167 (83.23%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKD+S+N  SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of Csor.00g206980 vs. TAIR 10
Match: AT5G03500.2 (Mediator complex, subunit Med7 )

HSP 1 Score: 283.1 bits (723), Expect = 1.5e-76
Identity = 139/167 (83.23%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKD+S+N  SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of Csor.00g206980 vs. TAIR 10
Match: AT5G03500.3 (Mediator complex, subunit Med7 )

HSP 1 Score: 283.1 bits (723), Expect = 1.5e-76
Identity = 139/167 (83.23%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKD+S+N  SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

The following BLAST results are available for this feature:

BLAST of Csor.00g206980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYW3	6.4e-77	84.43	Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana O...	[more]
Q9LZD7	2.0e-75	83.23	Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana O...	[more]
Q55DQ5	2.4e-28	44.00	Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium ...	[more]
Q17MI0	7.9e-27	39.75	Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti OX=7159 G...	[more]
Q7PR68	4.8e-24	38.51	Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles gambiae OX=71...	[more]

BLAST of Csor.00g206980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937468.1	4.51e-114	100.00	mediator of RNA polymerase II transcription subunit 7a [Cucurbita moschata] >KAG...	[more]
XP_023539102.1	3.70e-113	99.40	mediator of RNA polymerase II transcription subunit 7a [Cucurbita pepo subsp. pe...	[more]
XP_023005907.1	1.51e-112	99.40	mediator of RNA polymerase II transcription subunit 7a [Cucurbita maxima]	[more]
XP_022151348.1	7.18e-111	97.02	mediator of RNA polymerase II transcription subunit 7a-like [Momordica charantia...	[more]
XP_008443001.1	2.06e-110	96.43	PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis ...	[more]

BLAST of Csor.00g206980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FG49	2.18e-114	100.00	Mediator of RNA polymerase II transcription subunit 7 OS=Cucurbita moschata OX=3...	[more]
A0A6J1KUF9	7.31e-113	99.40	Mediator of RNA polymerase II transcription subunit 7 OS=Cucurbita maxima OX=366...	[more]
A0A6J1DBY3	3.48e-111	97.02	Mediator of RNA polymerase II transcription subunit 7 OS=Momordica charantia OX=...	[more]
A0A5A7TKB8	9.97e-111	96.43	Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo var. makuw...	[more]
A0A0A0LBQ7	9.97e-111	96.43	Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis sativus OX=3659...	[more]

BLAST of Csor.00g206980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03220.1	4.5e-78	84.43	Mediator complex, subunit Med7	[more]
AT5G03500.1	1.5e-76	83.23	Mediator complex, subunit Med7	[more]
AT5G03500.2	1.5e-76	83.23	Mediator complex, subunit Med7	[more]
AT5G03500.3	1.5e-76	83.23	Mediator complex, subunit Med7	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 67..87
None	No IPR available	COILS	Coil	Coil	coord: 130..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR21428	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7	coord: 2..168
IPR009244	Mediator complex, subunit Med7	PFAM	PF05983	Med7	coord: 4..157 e-value: 7.8E-45 score: 153.3
IPR044888	Mediator complex, subunit Med7 superfmaily	GENE3D	6.10.140.200		coord: 64..159 e-value: 6.3E-29 score: 101.8
IPR037212	Mediator complex, subunit Med7/Med21-like	SUPERFAMILY	140718	Mediator hinge subcomplex-like	coord: 66..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g206980.m01	Csor.00g206980.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity