Csor.00g206960 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g206960
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionserine/arginine-rich SC35-like splicing factor SCL33
LocationCsor_Chr06: 2871269 .. 2874569 (+)
RNA-Seq ExpressionCsor.00g206960
SyntenyCsor.00g206960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTCAACCAGTAATATTATGGAAGCATTGTAAGTACCAAATTTCGAGGGAAGTTCTCGAGAGCATAACCTAAATAACCGGTGTAAAACAATAGTGGAAAAACGTCCATTTTTAATAGAAGAAATATAAATGATAAACTAGAGATTCAATCATTAAACCAATATTCGTATGACAAAATAAGAATATCCAAAAAGAATATTGAAGAGAATTTAAAAATAGCAAAGTTACAAATCTCTTTCTATAATTATCAGTCAATCATAATCGTCGATCTCCGTCTAACAAGTGGTCGTAAAAGAGCGTCCACGAGAAGCCATAGACCTGCGAAGTACTGAAACAAATCCGAGGGAAGTTTCTCGAACATAAAGGGCGTTCGAGGTAGAGGAGACAAAAGCCCCAAGGAAGATTGCAGAATTTGTCTCTGGAGGAAAAGGTTCCGTTCGATTTATCGGTTCTCTGATTCTCAGGTTTTCGCCTTCTTCTTCTCTTTGTTCTTGCTTTCTTTCAATATTTTCTCGATCGCAAATTTGATTTTATCGACTTTTGATTCAAGAAATCTCTACTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTATTGTTATTCCTTTTTATGCCGAATTGTGTTTTCTATCTCTCTGATCACGTTTGAAGAACGATATCTGTGAAAAAGGCTGCAACTATTGGCGAATTTACATATTTTTCGTTTAACTATTTTTAGAGTAGTTATTCCTTTGAGGTTTTGTTTGATTTGAGAAGAACTATTGTGAAAGAGAGTTTTGAGAAATCCTGTTTTTGTCTGTGTAGTTTACTGGTGATGTTTTGTTTTCTACGATATCGATCTCATTCGTTCTGAAGTTATATTGGAGCAGTTGATGGAAGGAAAAGTTTATAAGTAATCTTTTTGTCACTAGTTTGTCGCTGGATCAATCTGTTATGTTTTGTGTAATTTAGTATCGGTATTGGTAAATTTTCTTACGCTGTTTTTTATTGATCTTCTAGTGGCATATTTTTTTTAAATAGTTGATACCGTGTTTGTGTTCTAAATAAATATTCGTCTGCTTGGAACGTTTGCCCGTGTTCAATTGACGCAAAAGAAAGATTATCTCGTTGTTTATTTCTTGTGAGTGATGACAGAAATCTGTGGTAGCATGCTGATTGATGTGCGTTAATGTTCGCAGATTTAGGCTATGTTCATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACACCGTGATTTATTTTATTCCAATTGTTATAGGAAATTGAAAATGAGAGGTCGAAGTTACAGTTACAGTCCATCGCCACCAAGGAGTTATGGCAGGAGAAATCGAAGCCTTAGCCCAAGGGGTCATGGAGGCCGTGGAAGGGATCTGCCGACAAGTCTTTTGGTTCGGAACCTAAGGCATGACTGCAGGTTTGTGGCTGCATTTATACAATTATCTGTTGGTTCTTCAATTATGTTTTTATCGAATTATAAAGAAATGATATCAAAATATGTTCTCTGGTTGATCCAATTTTCAGCTTTCCGTACTTCTTTCTTTCTTTATTTTAATTGGAAGCTAAGAAGATTCAAATTGAAGTGTTTGTGTAATTTTCTTTGTTGGATTTTTCTCCTTTCTCTTAAGCTTCAAGATAGATCAGAATTCTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAGGTTTGAAGGTCACAGTTTACCTTTCTTTTGAAAAGCATTTTATATTATATATTCCTTGGGTAGGTTATATTTTGTATTTTCCTTTTCGAAATGAGGTGGAAAAAACATTTCTGTCAGGAAAAAGAACAAAAGCCAACCATTCAAAGAAGACTCTCGACCAATGAGTAATTGCACAATGGAGTTTCAGTTGTTGAGAATTTAAAGGGAAAAAGGATAATGTGTCTGCTTTTGTTCTATATTAACTTGATAAACTTCTTCATTCTTGCTCTTTTTTCCAGGCCAGAGGACCTGCGTGGATTATTTGGGCGGTTTGGTCCTCTGAAGGACATCTACTTGCCACGAGATTATTATTCCGGGTAGGCATACTCTTGAAGATTGTGCTTTTTCTTTGTATGCATCTGGTGTGTATGCATGTAAGGGTTTGTCTTACAGTAGTTATATTCAAACTCATTTTTAGTCCTTTTATTTCATACGCATGTAGTCTTCATATTTATGAAAATATTTTCTAAATTGTTACTTCTATGGCTTGCTCCTTTGTTCAATTATTTGGTTTCCAAATAACATACAATCGGTTTATCGAGTTTGGTTGTTTTTATTGGAAGTGTTGAAGACTGTCACCAATGAAGTAATAAGATTATCTAGTGGAAGACAAGAAGCAAGTAATTTGGTTGTTGTGTTGAAGACTTTCAAGTAAGTTGTGATGACTTAATGTGTACATGAAGATTCGGTGGAAGGTGGGTTTGATTGAATACATAGAGAAGAAGTTCACAAGTCTTGAAGAATTTCATCTCAATTTTTTTCTTTGCCACGCAGAAGGTTAGCATGGTGACACTCATATTTGTTAGTGCTCTATGTTGTCTGTATACGTTTCTGTCACTCGCAATTTGTCTCTGGATTGATTGATGATTGTAATGATGCCCCTAGTCATCAAATTGTCAAACTTTGTATTAACATCCGTTGTTAAACTTTGTATTTATGAATGGTATGTGATTGTGAGTGCAGAAAACCACGCGGCTTTGGGTTTGTTCAGTACATTGATCCTTCTGATGCTGCTGATGCAAAGTATGAATTAGATGGCCAAGTTCTATTGGGTCGTGAATTAACTGTTGTGTTCGCTGAGGAGAACAGGAAGAGACCTGAACAGATGAGAGCAAGAGACTCATCAAGGTTGCCATCTCTCTTGACTTCTCTGAACTCTCTTCAAATATCTTCAAAATTTTCCCTATAACTAATAGTGTTGTTCACATATGAAATTGTTATCAGGGGCCGGTCCTACAGTTACAGGCGTTCCCCGCTGCAATATTCTCAATCACCCCCCCATGGTCGAAAATATTCACGTAGTCCTGAATATTATTCCCCTGCTCGGTCTAGACGATATTCAAGGTGGGCAGTTATAATGTGTAGTATTTTTCAATAATGATCATTGGACCGTTTAGGAAAAGAGAGGGTTGTGGGATGGTCGATTCTAACCTTATTTATATGATACAGGTCAATCTCGCCTAGGGACCGAAGGTACAGGGAGCGATCCTACTCAAGGTCACCATATGATTCAAGGGACCGTGGCTATAGCCGAAGCCGAAGCCGAAGCAGGAGCCGGAGCTATAGCCGAAGCTATTCTAGGTGA

mRNA sequence

ATGGTGTCAACCAGTAATATTATGGAAGCATTGGCGTTCGAGGTAGAGGAGACAAAAGCCCCAAGGAAGATTGCAGAATTTGTCTCTGGAGGAAAAGGTTCCGTTCGATTTATCGGTTCTCTGATTCTCAGGAAATTGAAAATGAGAGGTCGAAGTTACAGTTACAGTCCATCGCCACCAAGGAGTTATGGCAGGAGAAATCGAAGCCTTAGCCCAAGGGGTCATGGAGGCCGTGGAAGGGATCTGCCGACAAGTCTTTTGGTTCGGAACCTAAGGCATGACTGCAGGCCAGAGGACCTGCGTGGATTATTTGGGCGGTTTGGTCCTCTGAAGGACATCTACTTGCCACGAGATTATTATTCCGGAAAACCACGCGGCTTTGGGTTTGTTCAGTACATTGATCCTTCTGATGCTGCTGATGCAAAGTATGAATTAGATGGCCAAGTTCTATTGGGTCGTGAATTAACTGTTGTGTTCGCTGAGGAGAACAGGAAGAGACCTGAACAGATGAGAGCAAGAGACTCATCAAGGGGCCGGTCCTACAGTTACAGGCGTTCCCCGCTGCAATATTCTCAATCACCCCCCCATGGTCGAAAATATTCACGTAGTCCTGAATATTATTCCCCTGCTCGGTCTAGACGATATTCAAGGTCAATCTCGCCTAGGGACCGAAGGTACAGGGAGCGATCCTACTCAAGGTCACCATATGATTCAAGGGACCGTGGCTATAGCCGAAGCCGAAGCCGAAGCAGGAGCCGGAGCTATAGCCGAAGCTATTCTAGGTGA

Coding sequence (CDS)

ATGGTGTCAACCAGTAATATTATGGAAGCATTGGCGTTCGAGGTAGAGGAGACAAAAGCCCCAAGGAAGATTGCAGAATTTGTCTCTGGAGGAAAAGGTTCCGTTCGATTTATCGGTTCTCTGATTCTCAGGAAATTGAAAATGAGAGGTCGAAGTTACAGTTACAGTCCATCGCCACCAAGGAGTTATGGCAGGAGAAATCGAAGCCTTAGCCCAAGGGGTCATGGAGGCCGTGGAAGGGATCTGCCGACAAGTCTTTTGGTTCGGAACCTAAGGCATGACTGCAGGCCAGAGGACCTGCGTGGATTATTTGGGCGGTTTGGTCCTCTGAAGGACATCTACTTGCCACGAGATTATTATTCCGGAAAACCACGCGGCTTTGGGTTTGTTCAGTACATTGATCCTTCTGATGCTGCTGATGCAAAGTATGAATTAGATGGCCAAGTTCTATTGGGTCGTGAATTAACTGTTGTGTTCGCTGAGGAGAACAGGAAGAGACCTGAACAGATGAGAGCAAGAGACTCATCAAGGGGCCGGTCCTACAGTTACAGGCGTTCCCCGCTGCAATATTCTCAATCACCCCCCCATGGTCGAAAATATTCACGTAGTCCTGAATATTATTCCCCTGCTCGGTCTAGACGATATTCAAGGTCAATCTCGCCTAGGGACCGAAGGTACAGGGAGCGATCCTACTCAAGGTCACCATATGATTCAAGGGACCGTGGCTATAGCCGAAGCCGAAGCCGAAGCAGGAGCCGGAGCTATAGCCGAAGCTATTCTAGGTGA

Protein sequence

MVSTSNIMEALAFEVEETKAPRKIAEFVSGGKGSVRFIGSLILRKLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRKRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDRRYRERSYSRSPYDSRDRGYSRSRSRSRSRSYSRSYSR
Homology
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BLAST of Csor.00g206960 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 6.2e-63
Identity = 147/225 (65.33%), Postives = 168/225 (74.67%), Query Frame = 0 

Query: 48  MRGRSYSYSPSPPRSYGRRNRSLSPRG-HGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGR 107
           MRGR  SY+PSPPR YGRR RS SPRG +GGR RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 108 FGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRKR 167
           FGP+KDIYLPRDYY+G PRGFGFVQ++DP+DAADAK+ +DG +LLGRELTVVFAEENRK+
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 168 PEQMRARDSSRGRSYSYRRSPLQY---SQSPP--HGRKYSRSPEYYSPARSRRYSRSISP 227
           P +MRAR+   GR    RR+P +Y   S+SPP   GR  SRS +YYSP   R + RSISP
Sbjct: 121 PTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISP 180

Query: 228 RDRRY-RERSYSRSPYDSRDRGYS----RSRSRSRSRSYSRSYSR 262
           R+ RY   RSYSRSP     RG S    R +SRS S S  RS SR
Sbjct: 181 REERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRRSISR 223

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BLAST of Csor.00g206960 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 8.4e-60
Identity = 145/224 (64.73%), Postives = 168/224 (75.00%), Query Frame = 0 

Query: 48  MRGRSYSYSPSPPRSYGRRNRSLSPRGH--GGRGRDLPTSLLVRNLRHDCRPEDLRGLFG 107
           MRGR  SY+PSPPR YGRR RS SPRG   G R  DLPTSLLVRNLRHDCR EDLR  F 
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFE 60

Query: 108 RFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRK 167
           +FGP+KDIYLPRDYY+G PRGFGF+Q++DP+DAA+AK+++DG +LLGRELTVVFAEENRK
Sbjct: 61  QFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 120

Query: 168 RPEQMRARDSSRGRSYSY---RRSPLQYSQSPP--HGRK-YSRSPEYYSPARSRRYSRSI 227
           +P +MR RD   GRS  +   RRSP +YS+SPP   GR+  SRS  Y SP   R  SRS+
Sbjct: 121 KPTEMRTRDRG-GRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSV 180

Query: 228 SPRDRRY-RERSYSRSP--YDSRDRGYSRSRSRSRSRSYSRSYS 261
           SP+DRRY +ERSYSRSP    SR R  S  R +S SRS  RS S
Sbjct: 181 SPQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHSRSPRRSVS 221

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BLAST of Csor.00g206960 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.7e-32
Identity = 111/237 (46.84%), Postives = 138/237 (58.23%), Query Frame = 0 

Query: 47  KMRGRSYSYSP-----SPPRSY-----GRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCR 106
           + R RS SYSP     SPPR        R     S R H   G   P+ LL+RNL  D R
Sbjct: 3   RARSRSRSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSG---PSGLLIRNLPLDAR 62

Query: 107 PEDLRGLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELT 166
           P DLR  F RFGPLKDIYLPR+YY+G+PRGFGFV+Y    DAA+A   ++ +V+ GRE+ 
Sbjct: 63  PNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIA 122

Query: 167 VVFAEENRKRPEQMRARDSSRGRSYSYR----RSPLQ------YSQSPPHGR-KYS--RS 226
           +VFAEENRK P++MR  + + GR   Y+    RSP +       S+SPP    ++S  R 
Sbjct: 123 IVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHSKVRE 182

Query: 227 PEYYSP-ARSRRYSRSISPRDRRYRERSYSRSPYDSRDRGYSRSR--SRSRSRSYSR 258
            + YSP  RSR  SRS  PR+ R  +    RSP + R     RSR  SRSRSRS SR
Sbjct: 183 DDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTPIRSRCLSRSRSRSLSR 236

[Close]
BLAST of Csor.00g206960 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-31
Identity = 99/222 (44.59%), Postives = 123/222 (55.41%), Query Frame = 0 

Query: 48  MRGRSYSYSPSPPRSYGRRNRSLSP----RGHGGRG------RDLPTSLLVRNLRHDCRP 107
           MR  S  Y   P R YG R RS  P    RG+GG G           SLLVRN+  DCRP
Sbjct: 1   MRRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRP 60

Query: 108 EDLRGLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTV 167
           E+LR  F RFGP++D+Y+PRDYYSG+PRGF FV+++D  DA +A+  ++ +   GRE+TV
Sbjct: 61  EELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITV 120

Query: 168 VFAEENRKRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSR 227
           V A E+RKRPE+MR +  +R R  S  R    + +S       SRSP   S +RSR  SR
Sbjct: 121 VVASESRKRPEEMRVKTRTRSREPSGSRD-RSHGRSRSRSISRSRSPRRPSDSRSRYRSR 180

Query: 228 SISPRDRRYRERSYSRSPYDSRDRGYSRSRSRSRSRSYSRSY 260
           S SP  RR         P    D  YSR       RSYS  Y
Sbjct: 181 SYSPAPRR-----RGGPPRGEEDENYSR-------RSYSPGY 209

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BLAST of Csor.00g206960 vs. ExPASy Swiss-Prot
Match: O75494 (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.7e-25
Identity = 87/195 (44.62%), Postives = 119/195 (61.03%), Query Frame = 0 

Query: 84  TSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKY 143
           TSL VRN+  D R EDLR  FGR+GP+ D+Y+P D+Y+ +PRGF +VQ+ D  DA DA +
Sbjct: 10  TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69

Query: 144 ELDGQVLLGRELTVVFAEENRKRPEQMRARD------SSRGRSYS-YRRSPLQYSQSPPH 203
            LD + + GR++ + FA+ +RK P QM+A++      SSR   Y  YRRS    S+S   
Sbjct: 70  NLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRS---RSRSYER 129

Query: 204 GRKYSRSPEY-----YSPARSR-----RYSRSISPRDR-RYRERSYSRSPYDSRDRGYSR 261
            R  SRS +Y     YSP  SR     R SRS S  DR ++R RS+SRS  +SR R  S+
Sbjct: 130 RRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRSKSQ 189

[Close]
BLAST of Csor.00g206960 vs. NCBI nr
Match: KAG6596659.1 (Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 501 bits (1291), Expect = 1.12e-178
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0 

Query: 1   MVSTSNIMEALAFEVEETKAPRKIAEFVSGGKGSVRFIGSLILRKLKMRGRSYSYSPSPP 60
           MVSTSNIMEALAFEVEETKAPRKIAEFVSGGKGSVRFIGSLILRKLKMRGRSYSYSPSPP
Sbjct: 1   MVSTSNIMEALAFEVEETKAPRKIAEFVSGGKGSVRFIGSLILRKLKMRGRSYSYSPSPP 60

Query: 61  RSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYY 120
           RSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYY
Sbjct: 61  RSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYY 120

Query: 121 SGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRKRPEQMRARDSSRGRS 180
           SGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRKRPEQMRARDSSRGRS
Sbjct: 121 SGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRKRPEQMRARDSSRGRS 180

Query: 181 YSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDRRYRERSYSRSPYDSRD 240
           YSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDRRYRERSYSRSPYDSRD
Sbjct: 181 YSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDRRYRERSYSRSPYDSRD 240

Query: 241 RGYSRSRSRSRSRSYSRSYSR 261
           RGYSRSRSRSRSRSYSRSYSR
Sbjct: 241 RGYSRSRSRSRSRSYSRSYSR 261

[Close]
BLAST of Csor.00g206960 vs. NCBI nr
Match: XP_023005833.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucurbita maxima])

HSP 1 Score: 412 bits (1058), Expect = 9.49e-144
Identity = 211/220 (95.91%), Postives = 218/220 (99.09%), Query Frame = 0 

Query: 42  ILRKLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLR 101
           + +KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLR
Sbjct: 5   VYKKLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLR 64

Query: 102 GLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAE 161
           GLFG+FGPLKDIYLPRDYYSGKPRGFGFVQYIDP+DAADAKYELDGQVLLGRELTVVFAE
Sbjct: 65  GLFGQFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAE 124

Query: 162 ENRKRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISP 221
           ENRKRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISP
Sbjct: 125 ENRKRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISP 184

Query: 222 RDRRYRERSYSRSPYDSRDRGYSRSRSRSRSRSYSRSYSR 261
           RD+ +RERSYSRSPY+SRDRGYSRSRSRSRSRSYSRSYSR
Sbjct: 185 RDQMHRERSYSRSPYNSRDRGYSRSRSRSRSRSYSRSYSR 224

[Close]
BLAST of Csor.00g206960 vs. NCBI nr
Match: XP_023005834.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita maxima])

HSP 1 Score: 410 bits (1054), Expect = 3.11e-143
Identity = 211/217 (97.24%), Postives = 216/217 (99.54%), Query Frame = 0 

Query: 45  KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF 104
           KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF
Sbjct: 2   KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF 61

Query: 105 GRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENR 164
           G+FGPLKDIYLPRDYYSGKPRGFGFVQYIDP+DAADAKYELDGQVLLGRELTVVFAEENR
Sbjct: 62  GQFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENR 121

Query: 165 KRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDR 224
           KRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRD+
Sbjct: 122 KRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDQ 181

Query: 225 RYRERSYSRSPYDSRDRGYSRSRSRSRSRSYSRSYSR 261
            +RERSYSRSPY+SRDRGYSRSRSRSRSRSYSRSYSR
Sbjct: 182 MHRERSYSRSPYNSRDRGYSRSRSRSRSRSYSRSYSR 218

[Close]
BLAST of Csor.00g206960 vs. NCBI nr
Match: XP_023539101.1 (serine/arginine-rich SC35-like splicing factor SCL33 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 408 bits (1048), Expect = 2.95e-142
Identity = 212/220 (96.36%), Postives = 215/220 (97.73%), Query Frame = 0 

Query: 42  ILRKLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLR 101
           + +KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLR
Sbjct: 5   VYKKLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLR 64

Query: 102 GLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAE 161
           GLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDP+DAADAKYELDGQVLLGRELTVVFAE
Sbjct: 65  GLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAE 124

Query: 162 ENRKRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISP 221
           ENRKRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISP
Sbjct: 125 ENRKRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISP 184

Query: 222 RDRRYRERSYSRSPYDSRDRGYSRSRSRSRSRSYSRSYSR 261
           RDRRYRE SYSRSPYDSRDRGYSRSRSRSRS  YS SYSR
Sbjct: 185 RDRRYREISYSRSPYDSRDRGYSRSRSRSRS--YSGSYSR 222

[Close]
BLAST of Csor.00g206960 vs. NCBI nr
Match: XP_022948454.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucurbita moschata])

HSP 1 Score: 407 bits (1046), Expect = 5.95e-142
Identity = 212/220 (96.36%), Postives = 214/220 (97.27%), Query Frame = 0 

Query: 42  ILRKLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLR 101
           + +KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLR
Sbjct: 5   VYKKLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLR 64

Query: 102 GLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAE 161
           GLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAE
Sbjct: 65  GLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAE 124

Query: 162 ENRKRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISP 221
           ENRKRPEQMRARDSS GRSYSYRRSPLQYSQSPPHGRKYS SPEYYSPARS RYSRSISP
Sbjct: 125 ENRKRPEQMRARDSSSGRSYSYRRSPLQYSQSPPHGRKYSPSPEYYSPARSGRYSRSISP 184

Query: 222 RDRRYRERSYSRSPYDSRDRGYSRSRSRSRSRSYSRSYSR 261
           RDRRYRERSYSRSPYDSRDRGYSRSRSRSRS  YSRSYSR
Sbjct: 185 RDRRYRERSYSRSPYDSRDRGYSRSRSRSRS--YSRSYSR 222

[Close]
BLAST of Csor.00g206960 vs. ExPASy TrEMBL
Match: A0A6J1L3A1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498719 PE=4 SV=1)

HSP 1 Score: 412 bits (1058), Expect = 4.60e-144
Identity = 211/220 (95.91%), Postives = 218/220 (99.09%), Query Frame = 0 

Query: 42  ILRKLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLR 101
           + +KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLR
Sbjct: 5   VYKKLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLR 64

Query: 102 GLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAE 161
           GLFG+FGPLKDIYLPRDYYSGKPRGFGFVQYIDP+DAADAKYELDGQVLLGRELTVVFAE
Sbjct: 65  GLFGQFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAE 124

Query: 162 ENRKRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISP 221
           ENRKRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISP
Sbjct: 125 ENRKRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISP 184

Query: 222 RDRRYRERSYSRSPYDSRDRGYSRSRSRSRSRSYSRSYSR 261
           RD+ +RERSYSRSPY+SRDRGYSRSRSRSRSRSYSRSYSR
Sbjct: 185 RDQMHRERSYSRSPYNSRDRGYSRSRSRSRSRSYSRSYSR 224

[Close]
BLAST of Csor.00g206960 vs. ExPASy TrEMBL
Match: A0A6J1L0E4 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498719 PE=4 SV=1)

HSP 1 Score: 410 bits (1054), Expect = 1.51e-143
Identity = 211/217 (97.24%), Postives = 216/217 (99.54%), Query Frame = 0 

Query: 45  KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF 104
           KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF
Sbjct: 2   KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF 61

Query: 105 GRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENR 164
           G+FGPLKDIYLPRDYYSGKPRGFGFVQYIDP+DAADAKYELDGQVLLGRELTVVFAEENR
Sbjct: 62  GQFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENR 121

Query: 165 KRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDR 224
           KRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRD+
Sbjct: 122 KRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDQ 181

Query: 225 RYRERSYSRSPYDSRDRGYSRSRSRSRSRSYSRSYSR 261
            +RERSYSRSPY+SRDRGYSRSRSRSRSRSYSRSYSR
Sbjct: 182 MHRERSYSRSPYNSRDRGYSRSRSRSRSRSYSRSYSR 218

[Close]
BLAST of Csor.00g206960 vs. ExPASy TrEMBL
Match: A0A6J1G9Y3 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452132 PE=4 SV=1)

HSP 1 Score: 407 bits (1046), Expect = 2.88e-142
Identity = 212/220 (96.36%), Postives = 214/220 (97.27%), Query Frame = 0 

Query: 42  ILRKLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLR 101
           + +KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLR
Sbjct: 5   VYKKLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLR 64

Query: 102 GLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAE 161
           GLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAE
Sbjct: 65  GLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAE 124

Query: 162 ENRKRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISP 221
           ENRKRPEQMRARDSS GRSYSYRRSPLQYSQSPPHGRKYS SPEYYSPARS RYSRSISP
Sbjct: 125 ENRKRPEQMRARDSSSGRSYSYRRSPLQYSQSPPHGRKYSPSPEYYSPARSGRYSRSISP 184

Query: 222 RDRRYRERSYSRSPYDSRDRGYSRSRSRSRSRSYSRSYSR 261
           RDRRYRERSYSRSPYDSRDRGYSRSRSRSRS  YSRSYSR
Sbjct: 185 RDRRYRERSYSRSPYDSRDRGYSRSRSRSRS--YSRSYSR 222

[Close]
BLAST of Csor.00g206960 vs. ExPASy TrEMBL
Match: A0A6J1G9D2 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452132 PE=4 SV=1)

HSP 1 Score: 405 bits (1042), Expect = 9.45e-142
Identity = 212/217 (97.70%), Postives = 212/217 (97.70%), Query Frame = 0 

Query: 45  KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF 104
           KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF
Sbjct: 2   KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF 61

Query: 105 GRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENR 164
           GRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENR
Sbjct: 62  GRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENR 121

Query: 165 KRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDR 224
           KRPEQMRARDSS GRSYSYRRSPLQYSQSPPHGRKYS SPEYYSPARS RYSRSISPRDR
Sbjct: 122 KRPEQMRARDSSSGRSYSYRRSPLQYSQSPPHGRKYSPSPEYYSPARSGRYSRSISPRDR 181

Query: 225 RYRERSYSRSPYDSRDRGYSRSRSRSRSRSYSRSYSR 261
           RYRERSYSRSPYDSRDRGYSRSRSRSRS  YSRSYSR
Sbjct: 182 RYRERSYSRSPYDSRDRGYSRSRSRSRS--YSRSYSR 216

[Close]
BLAST of Csor.00g206960 vs. ExPASy TrEMBL
Match: A0A6J1KYI3 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111498719 PE=4 SV=1)

HSP 1 Score: 405 bits (1040), Expect = 1.77e-141
Identity = 208/214 (97.20%), Postives = 213/214 (99.53%), Query Frame = 0 

Query: 48  MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 107
           MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFG+F
Sbjct: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGQF 60

Query: 108 GPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRKRP 167
           GPLKDIYLPRDYYSGKPRGFGFVQYIDP+DAADAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120

Query: 168 EQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDRRYR 227
           EQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRD+ +R
Sbjct: 121 EQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDQMHR 180

Query: 228 ERSYSRSPYDSRDRGYSRSRSRSRSRSYSRSYSR 261
           ERSYSRSPY+SRDRGYSRSRSRSRSRSYSRSYSR
Sbjct: 181 ERSYSRSPYNSRDRGYSRSRSRSRSRSYSRSYSR 214

[Close]
BLAST of Csor.00g206960 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 243.0 bits (619), Expect = 2.6e-64
Identity = 142/216 (65.74%), Postives = 164/216 (75.93%), Query Frame = 0 

Query: 48  MRGRSYSYSPSPPRSYGRRNRSLSPRG-HGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGR 107
           MRGR  SY+PSPPR YGRR RS SPRG +GGR RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 108 FGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRKR 167
           FGP+KDIYLPRDYY+G PRGFGFVQ++DP+DAADAK+ +DG +LLGRELTVVFAEENRK+
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 168 PEQMRARDSSRGRSYSYRRSPLQY---SQSPP--HGRKYSRSPEYYSPARSRRYSRSISP 227
           P +MRAR+   GR    RR+P +Y   S+SPP   GR  SRS +YYSP   R + RSISP
Sbjct: 121 PTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISP 180

Query: 228 RDRRY-RERSYSRSPYDSRDRGYSRSRSRSRSRSYS 257
           R+ RY   RSYSRSP     RG S +  R +SRS S
Sbjct: 181 REERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLS 214

[Close]
BLAST of Csor.00g206960 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 242.3 bits (617), Expect = 4.4e-64
Identity = 147/225 (65.33%), Postives = 168/225 (74.67%), Query Frame = 0 

Query: 48  MRGRSYSYSPSPPRSYGRRNRSLSPRG-HGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGR 107
           MRGR  SY+PSPPR YGRR RS SPRG +GGR RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 108 FGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRKR 167
           FGP+KDIYLPRDYY+G PRGFGFVQ++DP+DAADAK+ +DG +LLGRELTVVFAEENRK+
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 168 PEQMRARDSSRGRSYSYRRSPLQY---SQSPP--HGRKYSRSPEYYSPARSRRYSRSISP 227
           P +MRAR+   GR    RR+P +Y   S+SPP   GR  SRS +YYSP   R + RSISP
Sbjct: 121 PTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISP 180

Query: 228 RDRRY-RERSYSRSPYDSRDRGYS----RSRSRSRSRSYSRSYSR 262
           R+ RY   RSYSRSP     RG S    R +SRS S S  RS SR
Sbjct: 181 REERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRRSISR 223

[Close]
BLAST of Csor.00g206960 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 231.9 bits (590), Expect = 6.0e-61
Identity = 145/224 (64.73%), Postives = 168/224 (75.00%), Query Frame = 0 

Query: 48  MRGRSYSYSPSPPRSYGRRNRSLSPRGH--GGRGRDLPTSLLVRNLRHDCRPEDLRGLFG 107
           MRGR  SY+PSPPR YGRR RS SPRG   G R  DLPTSLLVRNLRHDCR EDLR  F 
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFE 60

Query: 108 RFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRK 167
           +FGP+KDIYLPRDYY+G PRGFGF+Q++DP+DAA+AK+++DG +LLGRELTVVFAEENRK
Sbjct: 61  QFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 120

Query: 168 RPEQMRARDSSRGRSYSY---RRSPLQYSQSPP--HGRK-YSRSPEYYSPARSRRYSRSI 227
           +P +MR RD   GRS  +   RRSP +YS+SPP   GR+  SRS  Y SP   R  SRS+
Sbjct: 121 KPTEMRTRDRG-GRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSV 180

Query: 228 SPRDRRY-RERSYSRSP--YDSRDRGYSRSRSRSRSRSYSRSYS 261
           SP+DRRY +ERSYSRSP    SR R  S  R +S SRS  RS S
Sbjct: 181 SPQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHSRSPRRSVS 221

[Close]
BLAST of Csor.00g206960 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 229.2 bits (583), Expect = 3.9e-60
Identity = 147/238 (61.76%), Postives = 168/238 (70.59%), Query Frame = 0 

Query: 48  MRGRSYSYSPSPPRSYGRRNRSLSPRG-HGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGR 107
           MRGR  SY+PSPPR YGRR RS SPRG +GGR RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 108 FGPLKDIYLPRDYYSGK------------PRGFGFVQYIDPSDAADAKYELDGQVLLGRE 167
           FGP+KDIYLPRDYY+G             PRGFGFVQ++DP+DAADAK+ +DG +LLGRE
Sbjct: 61  FGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGYLLLGRE 120

Query: 168 LTVVFAEENRKRPEQMRARDSSRG-RSYSYRRSPLQY---SQSPP--HGRKYSRSPEYYS 227
           LTVVFAEENRK+P +MRAR+   G R    RR+P +Y   S+SPP   GR  SRS +YYS
Sbjct: 121 LTVVFAEENRKKPTEMRARERGGGSRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYS 180

Query: 228 PARSRRYSRSISPRDRRY-RERSYSRSPYDSRDRGYS----RSRSRSRSRSYSRSYSR 262
           P   R + RSISPR+ RY   RSYSRSP     RG S    R +SRS S S  RS SR
Sbjct: 181 PPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRRSISR 236

[Close]
BLAST of Csor.00g206960 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 138.7 bits (348), Expect = 6.9e-33
Identity = 111/237 (46.84%), Postives = 138/237 (58.23%), Query Frame = 0 

Query: 47  KMRGRSYSYSP-----SPPRSY-----GRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCR 106
           + R RS SYSP     SPPR        R     S R H   G   P+ LL+RNL  D R
Sbjct: 3   RARSRSRSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSG---PSGLLIRNLPLDAR 62

Query: 107 PEDLRGLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELT 166
           P DLR  F RFGPLKDIYLPR+YY+G+PRGFGFV+Y    DAA+A   ++ +V+ GRE+ 
Sbjct: 63  PNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIA 122

Query: 167 VVFAEENRKRPEQMRARDSSRGRSYSYR----RSPLQ------YSQSPPHGR-KYS--RS 226
           +VFAEENRK P++MR  + + GR   Y+    RSP +       S+SPP    ++S  R 
Sbjct: 123 IVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHSKVRE 182

Query: 227 PEYYSP-ARSRRYSRSISPRDRRYRERSYSRSPYDSRDRGYSRSR--SRSRSRSYSR 258
            + YSP  RSR  SRS  PR+ R  +    RSP + R     RSR  SRSRSRS SR
Sbjct: 183 DDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTPIRSRCLSRSRSRSLSR 236

The following BLAST results are available for this feature:
BLAST of Csor.00g206960 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SEU46.2e-6365.33Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=... [more]
Q9LHP28.4e-6064.73Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX... [more]
Q1PDV29.7e-3246.84Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=... [more]
Q8L3X81.3e-3144.59Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=... [more]
O754946.7e-2544.62Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 S... [more]
BLAST of Csor.00g206960 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6596659.11.12e-178100.00Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyro... [more]
XP_023005833.19.49e-14495.91serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucurbita maxim... [more]
XP_023005834.13.11e-14397.24serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita maxim... [more]
XP_023539101.12.95e-14296.36serine/arginine-rich SC35-like splicing factor SCL33 [Cucurbita pepo subsp. pepo... [more]
XP_022948454.15.95e-14296.36serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucurbita mosch... [more]
BLAST of Csor.00g206960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1L3A14.60e-14495.91serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita max... [more]
A0A6J1L0E41.51e-14397.24serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita max... [more]
A0A6J1G9Y32.88e-14296.36serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita mos... [more]
A0A6J1G9D29.45e-14297.70serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita mos... [more]
A0A6J1KYI31.77e-14197.20serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 OS=Cucurbita max... [more]
BLAST of Csor.00g206960 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G55310.22.6e-6465.74SC35-like splicing factor 33 [more]
AT1G55310.14.4e-6465.33SC35-like splicing factor 33 [more]
AT3G13570.16.0e-6164.73SC35-like splicing factor 30A [more]
AT1G55310.33.9e-6061.76SC35-like splicing factor 33 [more]
AT5G18810.16.9e-3346.84SC35-like splicing factor 28 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 85..158
e-value: 1.5E-22
score: 90.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 86..155
e-value: 2.3E-19
score: 69.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 84..162
score: 17.711065
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 78..189
e-value: 7.3E-26
score: 92.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..198
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..247
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 48..261
NoneNo IPR availablePANTHERPTHR23147:SF155SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30Acoord: 48..261
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 84..185

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g206960.m01Csor.00g206960.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016607 nuclear speck
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding