Csor.00g206370 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g206370
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionCS domain-containing protein
LocationCsor_Chr06: 3236297 .. 3237379 (-)
RNA-Seq ExpressionCsor.00g206370
SyntenyCsor.00g206370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCGACGAGGTTTCCCTGTGCTCAAACCCTATCGAAAACCTCGAATTCTCTTCTCCGATCTTATCTTTTAGCCCTAATGGCGTCGAATTCGCTTCCAACTTCTCGTTTAGGTTATCGTTTTACTCGCAACTGCTCCTCCAGCACCGCTCCAGTTCGCACTTTGGATTATGAGGTACTTCTTAGATGGTTTGTGTTTTGTGTGTTGCAAAACTTAGGACTGATTTGATATTTCAGGATTTTTTTAATGGAAGTGTTTATTGGAAGACATTTTCGCATTTTCACATTGCCTTTCTAACATCTGAACTGACTATTGTTAGGATTTATGACTCAAAGAGAAATTTGATTCTTGTTTACAATTTTTATCTTTAGTTATGATGTATTTGATTGACATACGTCGAGGAACTAGAGATTAGAGAGCCAAAGTTTTGTTTGCAGATTTGTCGTTGAGGGTGTAATGAATATTTGTGCGTTGTATGATGTGTCGTCTTTGTGAGATACGTAAATTGTTTATTGGCGATGAACAATCTACTTGCATCAATTTAATGCAGATAATCTTTGGAACAAACTGGTTTGTTTATCTTGTAATTCCATTTCTTCTTCCCTTTTTCAAATTTGATAACCGTTGGTTGATCGTATATTTCATTATAATTCTATGATTCAGAGTATCATTTCCTATTTGATCTCTTTGAATTTCATATTCGAAGTTGTGATCGGATCTATTCACTAAAAGAATCGATTCAATACCTTTCTTATGTACCCATAGGTGTTATATTGGATTTGAATAAGATTTTGGATCCATCCATATTGATTTACTGCCTCCATTATCTTGTTGCTAGCGTCATGACCACCTAGATTAGCTTAAGAAATGGAAGGAAAAACTATAGTTGTTGTTTTGGGAGCATGTGTAGTTGGAATTGCTTTTTATTTCGCTCACCAGTCTTTTACCCCCCTACTTACTGGATGAGGTTTCATGTAGTTCACCAATGGTTCTTCTGAAGTGGAACTGAATAACACCTTGGGAGACAAGAAATTGGTAGTTCAAAAGATGTTTTGGTGGATGCAAATCACGCCTCGTTGA

mRNA sequence

ATGGCTTCGACGAGGTTTCCCTGTGCTCAAACCCTATCGAAAACCTCGAATTCTCTTCTCCGATCTTATCTTTTAGCCCTAATGGCGTCGAATTCGCTTCCAACTTCTCGTTTAGGTTATCGTTTTACTCGCAACTGCTCCTCCAGCACCGCTCCAGTTCGCACTTTGGATTATGAGTTCACCAATGGTTCTTCTGAAGTGGAACTGAATAACACCTTGGGAGACAAGAAATTGGTAGTTCAAAAGATGTTTTGGTGGATGCAAATCACGCCTCGTTGA

Coding sequence (CDS)

ATGGCTTCGACGAGGTTTCCCTGTGCTCAAACCCTATCGAAAACCTCGAATTCTCTTCTCCGATCTTATCTTTTAGCCCTAATGGCGTCGAATTCGCTTCCAACTTCTCGTTTAGGTTATCGTTTTACTCGCAACTGCTCCTCCAGCACCGCTCCAGTTCGCACTTTGGATTATGAGTTCACCAATGGTTCTTCTGAAGTGGAACTGAATAACACCTTGGGAGACAAGAAATTGGTAGTTCAAAAGATGTTTTGGTGGATGCAAATCACGCCTCGTTGA

Protein sequence

MASTRFPCAQTLSKTSNSLLRSYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYEFTNGSSEVELNNTLGDKKLVVQKMFWWMQITPR
Homology
[Close]
BLAST of Csor.00g206370 vs. NCBI nr
Match: KAG6596718.1 (hypothetical protein SDJN03_09898, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181 bits (458), Expect = 3.42e-57
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MASTRFPCAQTLSKTSNSLLRSYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYEF 60
          MASTRFPCAQTLSKTSNSLLRSYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYEF
Sbjct: 1  MASTRFPCAQTLSKTSNSLLRSYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYEF 60

Query: 61 TNGSSEVELNNTLGDKKLVVQKMFWWMQITPR 92
          TNGSSEVELNNTLGDKKLVVQKMFWWMQITPR
Sbjct: 61 TNGSSEVELNNTLGDKKLVVQKMFWWMQITPR 92

[Close]
BLAST of Csor.00g206370 vs. NCBI nr
Match: KAG7028255.1 (hypothetical protein SDJN02_09436 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112 bits (279), Expect = 4.41e-30
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MASTRFPCAQTLSKTSNSLLRSYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYE 59
          MASTRFPCAQTLSKTSNSLLRSYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYE
Sbjct: 1  MASTRFPCAQTLSKTSNSLLRSYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYE 59

[Close]
BLAST of Csor.00g206370 vs. NCBI nr
Match: XP_022965359.1 (probable inactive shikimate kinase like 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 63.9 bits (154), Expect = 2.03e-09
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 25 LALMASNSLP--TSRLGYRFTRNCSSSTAPVRTLDYEFTNGSSEVEL 69
          + L +   LP  TSRL  RFTRNCSSSTAPVRTLDYEFT+GSSEVEL
Sbjct: 42 IGLTSCTGLPPATSRLSSRFTRNCSSSTAPVRTLDYEFTDGSSEVEL 88

[Close]
BLAST of Csor.00g206370 vs. NCBI nr
Match: XP_022145269.1 (probable inactive shikimate kinase like 2, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 5.03e-09
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 22 SYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYEFTNGSSEVELNNTLGDKKL 78
          S  L   A  S  TSR   RF RNCSSST PVRTLDYEFT+GSSEVEL   LG +++
Sbjct: 41 SIALTSSAGLSPATSRFSSRFARNCSSSTTPVRTLDYEFTDGSSEVELRLQLGTQEI 97

[Close]
BLAST of Csor.00g206370 vs. NCBI nr
Match: XP_022145268.1 (probable inactive shikimate kinase like 2, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 5.19e-09
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 22 SYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYEFTNGSSEVELNNTLGDKKL 78
          S  L   A  S  TSR   RF RNCSSST PVRTLDYEFT+GSSEVEL   LG +++
Sbjct: 41 SIALTSSAGLSPATSRFSSRFARNCSSSTTPVRTLDYEFTDGSSEVELRLQLGTQEI 97

[Close]
BLAST of Csor.00g206370 vs. ExPASy TrEMBL
Match: A0A6J1HQS7 (probable inactive shikimate kinase like 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111465239 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.85e-10
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 25 LALMASNSLP--TSRLGYRFTRNCSSSTAPVRTLDYEFTNGSSEVEL 69
          + L +   LP  TSRL  RFTRNCSSSTAPVRTLDYEFT+GSSEVEL
Sbjct: 42 IGLTSCTGLPPATSRLSSRFTRNCSSSTAPVRTLDYEFTDGSSEVEL 88

[Close]
BLAST of Csor.00g206370 vs. ExPASy TrEMBL
Match: A0A6J1CUQ8 (probable inactive shikimate kinase like 2, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014761 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.44e-09
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 22 SYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYEFTNGSSEVELNNTLGDKKL 78
          S  L   A  S  TSR   RF RNCSSST PVRTLDYEFT+GSSEVEL   LG +++
Sbjct: 41 SIALTSSAGLSPATSRFSSRFARNCSSSTTPVRTLDYEFTDGSSEVELRLQLGTQEI 97

[Close]
BLAST of Csor.00g206370 vs. ExPASy TrEMBL
Match: A0A6J1CVH5 (probable inactive shikimate kinase like 2, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014761 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.51e-09
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 22 SYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYEFTNGSSEVELNNTLGDKKL 78
          S  L   A  S  TSR   RF RNCSSST PVRTLDYEFT+GSSEVEL   LG +++
Sbjct: 41 SIALTSSAGLSPATSRFSSRFARNCSSSTTPVRTLDYEFTDGSSEVELRLQLGTQEI 97

[Close]
BLAST of Csor.00g206370 vs. ExPASy TrEMBL
Match: A0A1S3BJK2 (probable inactive shikimate kinase like 2, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490754 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.04e-09
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 22 SYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYEFTNGSSEVELNNTLGDKKL 78
          S  L   +S S   SR   RFTRNCSSSTAPVRTLDYEFT+ SSEVEL   LG + +
Sbjct: 41 STALTSCSSLSPSNSRFSSRFTRNCSSSTAPVRTLDYEFTDSSSEVELRLQLGTQDI 97

[Close]
BLAST of Csor.00g206370 vs. ExPASy TrEMBL
Match: A0A1S3BL22 (probable inactive shikimate kinase like 2, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490754 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.85e-09
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 22 SYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYEFTNGSSEVELNNTLGDKKL 78
          S  L   +S S   SR   RFTRNCSSSTAPVRTLDYEFT+ SSEVEL   LG + +
Sbjct: 41 STALTSCSSLSPSNSRFSSRFTRNCSSSTAPVRTLDYEFTDSSSEVELRLQLGTQDI 97

The following BLAST results are available for this feature:
BLAST of Csor.00g206370 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g206370 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6596718.13.42e-57100.00hypothetical protein SDJN03_09898, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7028255.14.41e-30100.00hypothetical protein SDJN02_09436 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022965359.12.03e-0974.47probable inactive shikimate kinase like 2, chloroplastic [Cucurbita maxima][more]
XP_022145269.15.03e-0961.40probable inactive shikimate kinase like 2, chloroplastic isoform X2 [Momordica c... [more]
XP_022145268.15.19e-0961.40probable inactive shikimate kinase like 2, chloroplastic isoform X1 [Momordica c... [more]
BLAST of Csor.00g206370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HQS79.85e-1074.47probable inactive shikimate kinase like 2, chloroplastic OS=Cucurbita maxima OX=... [more]
A0A6J1CUQ82.44e-0961.40probable inactive shikimate kinase like 2, chloroplastic isoform X2 OS=Momordica... [more]
A0A6J1CVH52.51e-0961.40probable inactive shikimate kinase like 2, chloroplastic isoform X1 OS=Momordica... [more]
A0A1S3BJK28.04e-0961.40probable inactive shikimate kinase like 2, chloroplastic isoform X2 OS=Cucumis m... [more]
A0A1S3BL228.85e-0961.40probable inactive shikimate kinase like 2, chloroplastic isoform X1 OS=Cucumis m... [more]
BLAST of Csor.00g206370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g206370.m01Csor.00g206370.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
molecular_function GO:0016301 kinase activity