Csor.00g205910 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g205910
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	nuclear transcription factor Y subunit B-3-like
Location	Csor_Chr06: 3527631 .. 3528206 (-)
RNA-Seq Expression	Csor.00g205910
Synteny	Csor.00g205910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACTCCGACAACGACTCCGCTGGCGGCAACCAGAAATCACCGTCGCCGCGGGAGCACGACAGACTCCTCCCGATCGCGAACGTCGGCCGGATTATGAAGAAGGCCCTCCCAGGGAACGCGAAAATCTCAAAGGAAGCCAAAGAGACCGTCCAAGAATGCGTCTCGGAGTTCATCAGTTTCATCACAGGCGAGGCCTCCGACAAGTGCCATAAGGAGAAGCGAAAGACGATCAACGGCGACGATTTGCTTTGGGCCATGGCGACGTTAGGGTTCGAAGATTACGTCGATCCTCTCAAGGTTTACCTCCAGCGTTTTCGAGAAATTGAAGGCGAGAAGACTACGCTCGCCTCGCGCGACGGCGGTAGCGGTAGCGGTAGCGGTAGCGCTTCCGCTTCTACAGCTGCGAATAGTGCGTATTTTGACGGCGGCGGCGGCGCTGAATTTGGTGGTGGGATGGGAACGATGATGACGATGAATATGCCTCCAAGTGTTTATGGTTCTAATGGGCCACGTTGGGATGGGCCACGTTGGGATGGGTCTGCGTTTAATTCTACGGGTCGGCCCAACTAG

mRNA sequence

ATGGCGGACTCCGACAACGACTCCGCTGGCGGCAACCAGAAATCACCGTCGCCGCGGGAGCACGACAGACTCCTCCCGATCGCGAACGTCGGCCGGATTATGAAGAAGGCCCTCCCAGGGAACGCGAAAATCTCAAAGGAAGCCAAAGAGACCGTCCAAGAATGCGTCTCGGAGTTCATCAGTTTCATCACAGGCGAGGCCTCCGACAAGTGCCATAAGGAGAAGCGAAAGACGATCAACGGCGACGATTTGCTTTGGGCCATGGCGACGTTAGGGTTCGAAGATTACGTCGATCCTCTCAAGGTTTACCTCCAGCGTTTTCGAGAAATTGAAGGCGAGAAGACTACGCTCGCCTCGCGCGACGGCGGTAGCGGTAGCGGTAGCGGTAGCGCTTCCGCTTCTACAGCTGCGAATAGTGCGTATTTTGACGGCGGCGGCGGCGCTGAATTTGGTGGTGGGATGGGAACGATGATGACGATGAATATGCCTCCAAGTGTTTATGGTTCTAATGGGCCACGTTGGGATGGGCCACGTTGGGATGGGTCTGCGTTTAATTCTACGGGTCGGCCCAACTAG

Coding sequence (CDS)

ATGGCGGACTCCGACAACGACTCCGCTGGCGGCAACCAGAAATCACCGTCGCCGCGGGAGCACGACAGACTCCTCCCGATCGCGAACGTCGGCCGGATTATGAAGAAGGCCCTCCCAGGGAACGCGAAAATCTCAAAGGAAGCCAAAGAGACCGTCCAAGAATGCGTCTCGGAGTTCATCAGTTTCATCACAGGCGAGGCCTCCGACAAGTGCCATAAGGAGAAGCGAAAGACGATCAACGGCGACGATTTGCTTTGGGCCATGGCGACGTTAGGGTTCGAAGATTACGTCGATCCTCTCAAGGTTTACCTCCAGCGTTTTCGAGAAATTGAAGGCGAGAAGACTACGCTCGCCTCGCGCGACGGCGGTAGCGGTAGCGGTAGCGGTAGCGCTTCCGCTTCTACAGCTGCGAATAGTGCGTATTTTGACGGCGGCGGCGGCGCTGAATTTGGTGGTGGGATGGGAACGATGATGACGATGAATATGCCTCCAAGTGTTTATGGTTCTAATGGGCCACGTTGGGATGGGCCACGTTGGGATGGGTCTGCGTTTAATTCTACGGGTCGGCCCAACTAG

Protein sequence

MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFISFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASRDGGSGSGSGSASASTAANSAYFDGGGGAEFGGGMGTMMTMNMPPSVYGSNGPRWDGPRWDGSAFNSTGRPN

Homology

[Close]

BLAST of Csor.00g205910 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.1e-51
Identity = 113/162 (69.75%), Postives = 122/162 (75.31%), Query Frame = 0


Query: 1   MADSDNDSAGGNQ-KSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEF 60
           MADSDNDS G     + S RE DR LPIANV RIMKKALP NAKISK+AKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLAS 120
           ISFITGEASDKC +EKRKTINGDDLLWAM TLGFEDYV+PLKVYLQ++RE+EGEKTT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDG---GSGSGSGSASASTAANSAYFDGGGGAEFGGGMGTMM 159
           R G   G G G G+ S S          GG   +GGGM T M
Sbjct: 121 RQGDKEGGGGGGGAGSGS----------GGAPMYGGGMVTTM 152

[Close]

BLAST of Csor.00g205910 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.2e-50
Identity = 113/175 (64.57%), Postives = 129/175 (73.71%), Query Frame = 0


Query: 1   MADSDNDSAGGNQ--KSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSE 60
           M DSDN+S G +   +  S RE DR LPIANV RIMK+ALP NAKISK+AKETVQECVSE
Sbjct: 1   MPDSDNESGGPSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSE 60

Query: 61  FISFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLA 120
           FISFITGEASDKC +EKRKTINGDDLLWAM TLGFEDY+DPLK+YL +FRE+EGEK   A
Sbjct: 61  FISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEKAIGA 120

Query: 121 SRDGGSGS----GSGSASASTAANSAYFDGGGGAEFGGGMGTMMTMNMPPSVYGS 170
           +  GG G+    GSGS S S     A  + GG   +GGG G +M M  P  +YGS
Sbjct: 121 AGSGGGGAASSGGSGSGSGSHHHQDASRNNGGYGMYGGGGGMIMMMGQP--MYGS 173

[Close]

BLAST of Csor.00g205910 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 6.4e-49
Identity = 106/157 (67.52%), Postives = 115/157 (73.25%), Query Frame = 0


Query: 1   MADSDNDSAGG-------NQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQ 60
           M DSD DS GG        Q S SPRE DR LPIANV RIMKKALP NAKISK+AKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGE 120
           ECVSEFISF+TGEASDKC KEKRKTINGDDLLWAM TLGFEDYV+PLKVYLQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KTTLASRDGGSGSGSGSASASTAANSAYFDGGGGAEF 151
           +T L     G   G     A       ++ GGGG ++
Sbjct: 121 RTGLGRPQTGGEVGEHQRDA-VGDGGGFYGGGGGMQY 156

[Close]

BLAST of Csor.00g205910 vs. ExPASy Swiss-Prot
Match: Q75IZ7 (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.1e-47
Identity = 114/178 (64.04%), Postives = 128/178 (71.91%), Query Frame = 0


Query: 1   MADSDNDSAGGNQ----KSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECV 60
           M DSDNDS G +     +  SPRE DR LPIANV RIMKKALP NAKISK+AKETVQECV
Sbjct: 1   MPDSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTT 120
           SEFISFITGEASDKC +EKRKTINGDDLLWAM TLGFEDYVDPLK YL +FREIEGE+  
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGERA- 120

Query: 121 LASRDGGSGSGSGSASASTAANSAYFDGG--GGAEFGGGMGTMMTMNMPPSVYGSNGP 173
            A+   G+G+ + S +     ++A   GG  G A  G G G MM M M   +YGS  P
Sbjct: 121 -AASTTGAGTSAASTTPPQQQHTANAAGGYAGYAAPGAGPGGMMMM-MGQPMYGSPPP 175

[Close]

BLAST of Csor.00g205910 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-41
Identity = 92/145 (63.45%), Postives = 107/145 (73.79%), Query Frame = 0


Query: 10  GGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFISFITGEASD 69
           GG       RE DR LPIAN+ RIMKKA+P N KI+K+AKETVQECVSEFISFIT EASD
Sbjct: 28  GGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASD 87

Query: 70  KCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGE-KTTLASRDG------ 129
           KC +EKRKTINGDDLLWAMATLGFEDY++PLKVYLQ++RE+EG+ K T  + DG      
Sbjct: 88  KCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGSVKKDV 147

Query: 130 -GSGSGSGSASASTAANSAYFDGGG 147
            GS  GS S++      +AY  G G
Sbjct: 148 LGSHGGSSSSAQGMGQQAAYNQGMG 172

[Close]

BLAST of Csor.00g205910 vs. NCBI nr
Match: KAG6596764.1 (Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 379 bits (972), Expect = 2.25e-132
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI 60
           MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI
Sbjct: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI 60

Query: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120
           SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR
Sbjct: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120

Query: 121 DGGSGSGSGSASASTAANSAYFDGGGGAEFGGGMGTMMTMNMPPSVYGSNGPRWDGPRWD 180
           DGGSGSGSGSASASTAANSAYFDGGGGAEFGGGMGTMMTMNMPPSVYGSNGPRWDGPRWD
Sbjct: 121 DGGSGSGSGSASASTAANSAYFDGGGGAEFGGGMGTMMTMNMPPSVYGSNGPRWDGPRWD 180

Query: 181 GSAFNSTGRPN 191
           GSAFNSTGRPN
Sbjct: 181 GSAFNSTGRPN 191

[Close]

BLAST of Csor.00g205910 vs. NCBI nr
Match: XP_022951016.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita moschata])

HSP 1 Score: 337 bits (865), Expect = 2.93e-116
Identity = 178/191 (93.19%), Postives = 178/191 (93.19%), Query Frame = 0


Query: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI 60
           MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI
Sbjct: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI 60

Query: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120
           SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR
Sbjct: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120

Query: 121 DGGSGSGSGSASASTAANSAYFDGGGGAEFGGGMGTMMTMNMPPSVYGSNGPRWDGPRWD 180
           DGGS      ASASTAANSAYFDGG  AEFGGGMGTMMTMNMPPSVYGSNGPRWDGP   
Sbjct: 121 DGGS------ASASTAANSAYFDGG--AEFGGGMGTMMTMNMPPSVYGSNGPRWDGP--- 178

Query: 181 GSAFNSTGRPN 191
             AFNSTGRPN
Sbjct: 181 --AFNSTGRPN 178

[Close]

BLAST of Csor.00g205910 vs. NCBI nr
Match: XP_023540531.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337 bits (864), Expect = 4.47e-116
Identity = 177/191 (92.67%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI 60
           MADSDNDSAGGN KSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI
Sbjct: 1   MADSDNDSAGGNHKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI 60

Query: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120
           SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR
Sbjct: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120

Query: 121 DGGSGSGSGSASASTAANSAYFDGGGGAEFGGGMGTMMTMNMPPSVYGSNGPRWDGPRWD 180
           DGGSGS    A+ASTAANSAYFDGG  AEFGGGMGTMMTMNMPP+VYGSNGPRWDGP   
Sbjct: 121 DGGSGS----AAASTAANSAYFDGG--AEFGGGMGTMMTMNMPPNVYGSNGPRWDGP--- 180

Query: 181 GSAFNSTGRPN 191
             AFNSTGRPN
Sbjct: 181 --AFNSTGRPN 180

[Close]

BLAST of Csor.00g205910 vs. NCBI nr
Match: XP_023005572.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita maxima])

HSP 1 Score: 331 bits (848), Expect = 1.23e-113
Identity = 174/191 (91.10%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI 60
           MADSDNDSAGGNQKSPSPREHDRLLPIANV RIMKKALPGNAKISKEAKETVQECVSEFI
Sbjct: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVSRIMKKALPGNAKISKEAKETVQECVSEFI 60

Query: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120
           SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR
Sbjct: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120

Query: 121 DGGSGSGSGSASASTAANSAYFDGGGGAEFGGGMGTMMTMNMPPSVYGSNGPRWDGPRWD 180
           DGGSGS    A+ASTAANS YFDGG  AEFGGGMGTMMTMNMPP+VYGSNGPRW+GP   
Sbjct: 121 DGGSGS----AAASTAANSTYFDGG--AEFGGGMGTMMTMNMPPNVYGSNGPRWNGP--- 180

Query: 181 GSAFNSTGRPN 191
             AFNST RPN
Sbjct: 181 --AFNSTSRPN 180

[Close]

BLAST of Csor.00g205910 vs. NCBI nr
Match: XP_022965194.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita maxima])

HSP 1 Score: 295 bits (754), Expect = 2.78e-99
Identity = 154/190 (81.05%), Postives = 166/190 (87.37%), Query Frame = 0


Query: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI 60
           MADSDNDS GG QKSPSPREHDRLLPIANVGRIMKKALPGNAKISK+AKE VQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 60

Query: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120
           SF+TGEASDKCH EKRKTINGDDLLWAMATLGFEDYVDPLK+YLQRFREIEGE+T LASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 120

Query: 121 DGGSGSGSGSASASTAANSAYFDGGGGAEFGGGMGTMMTMNMPPSVYGSNGPRWDGPRWD 180
           D  S + + + +A+ AANSA+FDGGG  EFGGGMG  MTM MPP+VYGSNGPRWDGP   
Sbjct: 121 DSSSSAAATATAAAGAANSAFFDGGG--EFGGGMG--MTMTMPPNVYGSNGPRWDGP--- 180

Query: 181 GSAFNSTGRP 190
              F +TGRP
Sbjct: 181 --GFTTTGRP 181

[Close]

BLAST of Csor.00g205910 vs. ExPASy TrEMBL
Match: A0A6J1GGE6 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN=LOC111453989 PE=3 SV=1)

HSP 1 Score: 337 bits (865), Expect = 1.42e-116
Identity = 178/191 (93.19%), Postives = 178/191 (93.19%), Query Frame = 0


Query: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI 60
           MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI
Sbjct: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI 60

Query: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120
           SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR
Sbjct: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120

Query: 121 DGGSGSGSGSASASTAANSAYFDGGGGAEFGGGMGTMMTMNMPPSVYGSNGPRWDGPRWD 180
           DGGS      ASASTAANSAYFDGG  AEFGGGMGTMMTMNMPPSVYGSNGPRWDGP   
Sbjct: 121 DGGS------ASASTAANSAYFDGG--AEFGGGMGTMMTMNMPPSVYGSNGPRWDGP--- 178

Query: 181 GSAFNSTGRPN 191
             AFNSTGRPN
Sbjct: 181 --AFNSTGRPN 178

[Close]

BLAST of Csor.00g205910 vs. ExPASy TrEMBL
Match: A0A6J1KTI0 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=LOC111498517 PE=3 SV=1)

HSP 1 Score: 331 bits (848), Expect = 5.94e-114
Identity = 174/191 (91.10%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI 60
           MADSDNDSAGGNQKSPSPREHDRLLPIANV RIMKKALPGNAKISKEAKETVQECVSEFI
Sbjct: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVSRIMKKALPGNAKISKEAKETVQECVSEFI 60

Query: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120
           SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR
Sbjct: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120

Query: 121 DGGSGSGSGSASASTAANSAYFDGGGGAEFGGGMGTMMTMNMPPSVYGSNGPRWDGPRWD 180
           DGGSGS    A+ASTAANS YFDGG  AEFGGGMGTMMTMNMPP+VYGSNGPRW+GP   
Sbjct: 121 DGGSGS----AAASTAANSTYFDGG--AEFGGGMGTMMTMNMPPNVYGSNGPRWNGP--- 180

Query: 181 GSAFNSTGRPN 191
             AFNST RPN
Sbjct: 181 --AFNSTSRPN 180

[Close]

BLAST of Csor.00g205910 vs. ExPASy TrEMBL
Match: A0A6J1HQB9 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=LOC111465124 PE=3 SV=1)

HSP 1 Score: 295 bits (754), Expect = 1.35e-99
Identity = 154/190 (81.05%), Postives = 166/190 (87.37%), Query Frame = 0


Query: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI 60
           MADSDNDS GG QKSPSPREHDRLLPIANVGRIMKKALPGNAKISK+AKE VQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 60

Query: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120
           SF+TGEASDKCH EKRKTINGDDLLWAMATLGFEDYVDPLK+YLQRFREIEGE+T LASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 120

Query: 121 DGGSGSGSGSASASTAANSAYFDGGGGAEFGGGMGTMMTMNMPPSVYGSNGPRWDGPRWD 180
           D  S + + + +A+ AANSA+FDGGG  EFGGGMG  MTM MPP+VYGSNGPRWDGP   
Sbjct: 121 DSSSSAAATATAAAGAANSAFFDGGG--EFGGGMG--MTMTMPPNVYGSNGPRWDGP--- 180

Query: 181 GSAFNSTGRP 190
              F +TGRP
Sbjct: 181 --GFTTTGRP 181

[Close]

BLAST of Csor.00g205910 vs. ExPASy TrEMBL
Match: A0A0A0L4U4 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G047800 PE=3 SV=1)

HSP 1 Score: 290 bits (742), Expect = 9.70e-98
Identity = 154/194 (79.38%), Postives = 166/194 (85.57%), Query Frame = 0


Query: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI 60
           MADSDNDS GG QKSPSPREHDRLLPIANVGRIMKKALPGNAKISK+AKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120
           SF+TGEASDKCH EKRKTINGDDLLWAMATLGFEDYVDPLK+YLQRFREIEGE+TTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DGGSGSGSGSASASTAANSAYFDGGGGAEFGG----GMGTMMTMNMPPSVYGSNGPRWDG 180
           D    S S +A+++ A NS +FDGGG  EFGG    GMG  MT  MPP+VYGSNGPRWDG
Sbjct: 121 D----SASSAANSAAAGNSGFFDGGG--EFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDG 180

Query: 181 PRWDGSAFNSTGRP 190
           P      F++TGRP
Sbjct: 181 P-----GFSTTGRP 183

[Close]

BLAST of Csor.00g205910 vs. ExPASy TrEMBL
Match: A0A5A7VDK6 (Nuclear transcription factor Y subunit B-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00130 PE=3 SV=1)

HSP 1 Score: 288 bits (737), Expect = 5.80e-97
Identity = 154/194 (79.38%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI 60
           MADSDNDS GG QKSPSPREHDRLLPIANVGRIMKKALPGNAKISK+AKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120
           SF+TGEASDKCH EKRKTINGDDLLWAMATLGFEDYVDPLK+YLQRFREIEGE+TTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DGGSGSGSGSASASTAANSAYFDGGGGAEFGGGMGTMM----TMNMPPSVYGSNGPRWDG 180
           D  + S   SA    A NS +FDGGG  EFGGGMG  M    TM MPP+VYGS+GPRWDG
Sbjct: 121 DSAASSAPNSA---VAGNSGFFDGGG--EFGGGMGMGMGMGMTMAMPPNVYGSDGPRWDG 180

Query: 181 PRWDGSAFNSTGRP 190
           P      F++TGRP
Sbjct: 181 P-----GFSTTGRP 184

[Close]

BLAST of Csor.00g205910 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 203.0 bits (515), Expect = 2.2e-52
Identity = 113/162 (69.75%), Postives = 122/162 (75.31%), Query Frame = 0


Query: 1   MADSDNDSAGGNQ-KSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEF 60
           MADSDNDS G     + S RE DR LPIANV RIMKKALP NAKISK+AKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLAS 120
           ISFITGEASDKC +EKRKTINGDDLLWAM TLGFEDYV+PLKVYLQ++RE+EGEKTT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDG---GSGSGSGSASASTAANSAYFDGGGGAEFGGGMGTMM 159
           R G   G G G G+ S S          GG   +GGGM T M
Sbjct: 121 RQGDKEGGGGGGGAGSGS----------GGAPMYGGGMVTTM 152

[Close]

BLAST of Csor.00g205910 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 195.3 bits (495), Expect = 4.5e-50
Identity = 106/157 (67.52%), Postives = 115/157 (73.25%), Query Frame = 0


Query: 1   MADSDNDSAGG-------NQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQ 60
           M DSD DS GG        Q S SPRE DR LPIANV RIMKKALP NAKISK+AKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGE 120
           ECVSEFISF+TGEASDKC KEKRKTINGDDLLWAM TLGFEDYV+PLKVYLQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KTTLASRDGGSGSGSGSASASTAANSAYFDGGGGAEF 151
           +T L     G   G     A       ++ GGGG ++
Sbjct: 121 RTGLGRPQTGGEVGEHQRDA-VGDGGGFYGGGGGMQY 156

[Close]

BLAST of Csor.00g205910 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-42
Identity = 89/134 (66.42%), Postives = 104/134 (77.61%), Query Frame = 0


Query: 1   MADSDNDSAG-GNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEF 60
           MAD+ +  AG G +   S RE DR LPIAN+ RIMKKALP N KI K+AK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGE-KTTLA 120
           ISFIT EASDKC KEKRKT+NGDDLLWAMATLGFEDY++PLK+YL R+RE+EG+ K +  
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGK 120

Query: 121 SRDGGSGSGSGSAS 133
           S DG +    G  S
Sbjct: 121 SGDGSNRDAGGGVS 134

[Close]

BLAST of Csor.00g205910 vs. TAIR 10
Match: AT2G38880.3 (nuclear factor Y, subunit B1 )

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-42
Identity = 89/134 (66.42%), Postives = 104/134 (77.61%), Query Frame = 0


Query: 1   MADSDNDSAG-GNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEF 60
           MAD+ +  AG G +   S RE DR LPIAN+ RIMKKALP N KI K+AK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGE-KTTLA 120
           ISFIT EASDKC KEKRKT+NGDDLLWAMATLGFEDY++PLK+YL R+RE+EG+ K +  
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGK 120

Query: 121 SRDGGSGSGSGSAS 133
           S DG +    G  S
Sbjct: 121 SGDGSNRDAGGGVS 134

[Close]

BLAST of Csor.00g205910 vs. TAIR 10
Match: AT2G38880.1 (nuclear factor Y, subunit B1 )

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-42
Identity = 89/134 (66.42%), Postives = 104/134 (77.61%), Query Frame = 0


Query: 1   MADSDNDSAG-GNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEF 60
           MAD+ +  AG G +   S RE DR LPIAN+ RIMKKALP N KI K+AK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGE-KTTLA 120
           ISFIT EASDKC KEKRKT+NGDDLLWAMATLGFEDY++PLK+YL R+RE+EG+ K +  
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGK 120

Query: 121 SRDGGSGSGSGSAS 133
           S DG +    G  S
Sbjct: 121 SGDGSNRDAGGGVS 134

The following BLAST results are available for this feature:

BLAST of Csor.00g205910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23310	3.1e-51	69.75	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q69J40	1.2e-50	64.57	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q9FGJ3	6.4e-49	67.52	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q75IZ7	2.1e-47	64.04	Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q60EQ4	1.3e-41	63.45	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of Csor.00g205910 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596764.1	2.25e-132	100.00	Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subs...	[more]
XP_022951016.1	2.93e-116	93.19	nuclear transcription factor Y subunit B-3-like [Cucurbita moschata]	[more]
XP_023540531.1	4.47e-116	92.67	nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_023005572.1	1.23e-113	91.10	nuclear transcription factor Y subunit B-3-like [Cucurbita maxima]	[more]
XP_022965194.1	2.78e-99	81.05	nuclear transcription factor Y subunit B-3-like [Cucurbita maxima]	[more]

BLAST of Csor.00g205910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGE6	1.42e-116	93.19	nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KTI0	5.94e-114	91.10	nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HQB9	1.35e-99	81.05	nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0L4U4	9.70e-98	79.38	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0478...	[more]
A0A5A7VDK6	5.80e-97	79.38	Nuclear transcription factor Y subunit B-3-like OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Csor.00g205910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14540.1	2.2e-52	69.75	nuclear factor Y, subunit B3	[more]
AT5G47640.1	4.5e-50	67.52	nuclear factor Y, subunit B2	[more]
AT2G38880.2	1.6e-42	66.42	nuclear factor Y, subunit B1	[more]
AT2G38880.3	1.6e-42	66.42	nuclear factor Y, subunit B1	[more]
AT2G38880.1	1.6e-42	66.42	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 52..70 score: 50.24 coord: 90..108 score: 37.08 coord: 71..89 score: 39.59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR11064:SF129	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2	coord: 1..165
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 24..88 e-value: 1.3E-27 score: 95.8
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 11..140 e-value: 2.0E-45 score: 156.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 22..127
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 1..165
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 55..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g205910.m01	Csor.00g205910.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding