Csor.00g205890 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g205890
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr06: 3542187 .. 3542459 (+)
RNA-Seq Expression	Csor.00g205890
Synteny	Csor.00g205890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCCCTAGCAAAGTGTGGAGGTTCAGATTCCATTTCTTGGCTGCTCTAACTCTATGCCTTACACTCTTCTCCCTCGTCCTCCTCGCTCCTAGATTGCTCTCTCTCGTCGCCTACTTTTGGCCTCTCCTCCTCTCCACCGCGCTCTTCCTCCTCGCTGTCCTCCTCTTCGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGTGAAGGCCTTCTCAACTATGTCGCCGGCCATCTCGACCTAGACGCCTCGCTCAAGACTGATTAA

mRNA sequence

ATGGAGATCCCTAGCAAAGTGTGGAGGTTCAGATTCCATTTCTTGGCTGCTCTAACTCTATGCCTTACACTCTTCTCCCTCGTCCTCCTCGCTCCTAGATTGCTCTCTCTCGTCGCCTACTTTTGGCCTCTCCTCCTCTCCACCGCGCTCTTCCTCCTCGCTGTCCTCCTCTTCGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGTGAAGGCCTTCTCAACTATGTCGCCGGCCATCTCGACCTAGACGCCTCGCTCAAGACTGATTAA

Coding sequence (CDS)

ATGGAGATCCCTAGCAAAGTGTGGAGGTTCAGATTCCATTTCTTGGCTGCTCTAACTCTATGCCTTACACTCTTCTCCCTCGTCCTCCTCGCTCCTAGATTGCTCTCTCTCGTCGCCTACTTTTGGCCTCTCCTCCTCTCCACCGCGCTCTTCCTCCTCGCTGTCCTCCTCTTCGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGTGAAGGCCTTCTCAACTATGTCGCCGGCCATCTCGACCTAGACGCCTCGCTCAAGACTGATTAA

Protein sequence

MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLDLDASLKTD

Homology

[Close]

BLAST of Csor.00g205890 vs. NCBI nr
Match: KAG6596766.1 (hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172 bits (437), Expect = 4.74e-54
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLDLDASLKTD 90
          ASLPPPDKTGEGLLNYVAGHLDLDASLKTD
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLDLDASLKTD 90

[Close]

BLAST of Csor.00g205890 vs. NCBI nr
Match: KAG7028299.1 (hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171 bits (434), Expect = 1.36e-53
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIPSKVW+FRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLDLDASLKTD 90
          ASLPPPDKTGEGLLNYVAGHLDLDASLKTD
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLDLDASLKTD 90

[Close]

BLAST of Csor.00g205890 vs. NCBI nr
Match: KGN56016.1 (hypothetical protein Csa_010324 [Cucumis sativus])

HSP 1 Score: 126 bits (316), Expect = 1.40e-35
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIPSKV +FRFH L  L L LTLFSL LLAP  LSL+AYFWPL LSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLDLDAS-LKTD 90
           SLP PDK  EGLL+YVAGH DLD+S LK+D
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 91

[Close]

BLAST of Csor.00g205890 vs. NCBI nr
Match: KAG6577526.1 (hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015588.1 hypothetical protein SDJN02_23224, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117 bits (294), Expect = 2.88e-32
Identity = 66/87 (75.86%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP KV +FRFH +AAL L L LFSL+LLAP+ LSL+A+FWPLLLSTALFLLAVLLF N
Sbjct: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLD--LDA 85
           SLP PDK  EGLLNYVAGH D  LDA
Sbjct: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 87

[Close]

BLAST of Csor.00g205890 vs. NCBI nr
Match: CAB4308617.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 100 bits (250), Expect = 1.82e-25
Identity = 49/79 (62.03%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+ +F+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 79
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEPSGEGLLDYVAG 79

[Close]

BLAST of Csor.00g205890 vs. ExPASy TrEMBL
Match: A0A0A0L7E9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1)

HSP 1 Score: 126 bits (316), Expect = 6.75e-36
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIPSKV +FRFH L  L L LTLFSL LLAP  LSL+AYFWPL LSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLDLDAS-LKTD 90
           SLP PDK  EGLL+YVAGH DLD+S LK+D
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 91

[Close]

BLAST of Csor.00g205890 vs. ExPASy TrEMBL
Match: M5WI68 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 8.83e-26
Identity = 49/79 (62.03%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+ +F+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 79
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEASGEGLLDYVAG 79

[Close]

BLAST of Csor.00g205890 vs. ExPASy TrEMBL
Match: A0A314XNV4 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_25186 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 8.83e-26
Identity = 49/79 (62.03%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+ +F+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 79
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEPSGEGLLDYVAG 79

[Close]

BLAST of Csor.00g205890 vs. ExPASy TrEMBL
Match: A0A5E4FSR9 (PREDICTED: transmembrane OS=Prunus dulcis OX=3755 GN=ALMOND_2B021217 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 8.83e-26
Identity = 49/79 (62.03%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+ +F+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 79
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEASGEGLLDYVAG 79

[Close]

BLAST of Csor.00g205890 vs. ExPASy TrEMBL
Match: A0A6P5SWK3 (uncharacterized protein LOC110760142 OS=Prunus avium OX=42229 GN=LOC110760142 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 8.83e-26
Identity = 49/79 (62.03%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+ +F+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 79
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEASGEGLLDYVAG 79

[Close]

BLAST of Csor.00g205890 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1   MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
           MEI +K+  +RFHF+  + + + + SLV  APR+L+++AYFWPL  STA FL   + F  
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  ASLPPPDKTGEGLLNYVAG 80
                 + TGE L++YVAG
Sbjct: 182 FQQLSEEATGERLMDYVAG 200

[Close]

BLAST of Csor.00g205890 vs. TAIR 10
Match: AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-08
Identity = 41/106 (38.68%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 1   MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
           ME   K+ +F+   + A  L L   +LV  +P  L++++YFWPL LSTALFL AV  FA 
Sbjct: 1   MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61  ASLPPPDKT------------GEGLLNYVAG--HLDL--DASLKTD 91
            S  P   T             EG+L+YV G  H D+  D+  K D
Sbjct: 61  TSDLPVSSTIIPGEGAGLKVAAEGILDYVVGGQHEDILFDSFTKLD 106

The following BLAST results are available for this feature:

BLAST of Csor.00g205890 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g205890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596766.1	4.74e-54	100.00	hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7028299.1	1.36e-53	98.89	hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN56016.1	1.40e-35	76.92	hypothetical protein Csa_010324 [Cucumis sativus]	[more]
KAG6577526.1	2.88e-32	75.86	hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sorori...	[more]
CAB4308617.1	1.82e-25	62.03	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Csor.00g205890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7E9	6.75e-36	76.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1	[more]
M5WI68	8.83e-26	62.03	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1	[more]
A0A314XNV4	8.83e-26	62.03	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_251...	[more]
A0A5E4FSR9	8.83e-26	62.03	PREDICTED: transmembrane OS=Prunus dulcis OX=3755 GN=ALMOND_2B021217 PE=4 SV=1	[more]
A0A6P5SWK3	8.83e-26	62.03	uncharacterized protein LOC110760142 OS=Prunus avium OX=42229 GN=LOC110760142 PE...	[more]

BLAST of Csor.00g205890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16400.1	1.1e-11	44.30	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G13175.1	3.4e-08	38.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	OS01G0762900 PROTEIN	coord: 1..84
None	No IPR available	PANTHER	PTHR34125:SF4	PROTEIN, PUTATIVE-RELATED	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g205890.m01	Csor.00g205890.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane