Csor.00g204210 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g204210
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Rab3 GTPase-activating protein catalytic subunit
Location	Csor_Chr06: 5133749 .. 5134398 (+)
RNA-Seq Expression	Csor.00g204210
Synteny	Csor.00g204210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGCCTCCGCCCTCCTTTGTTTCCAAACCCAGGACTGCCTTCCATTCCGCGGCTCCTAAAACGGACCCACTTTTCTTCCTCTTTAAATCCAATTCACCAGGTGCGCACAATCTCATCCATTCTCTATATTTTCTCCCCCCTTTTTTTGGATTCTTCAATTCCTACTTCTTTCCCCTCTTCCCCATTCCCGCTCTCTGAACCGCTCAACATTTTCATAAACACAACTGCCTCAGGATCTCCTAAAACCATCCCACCACCACACTTCCCACAATCAACACCAGATAAGGGTATGATTCTGTTTCCTCTTTGTTGGCTCACTCCAGTTTATTTACCCATTTCTGTTTCTTTGTTGTCATGTTCGTTGAAATTCCATAATCGTAGCTGCTCGTTCTTTTATGGAATGTGGAAATCTCTATTTCAACCATCTATGTTTCTTCATAATCTGCATTTAGTCTGAATGGTTTTTCAACAACAATTTCAGTGTGTATATATCATCTGTAACAGACATTTTCCAAAGTGGATGTTGTAGTAAATAATTGCGTTGTTTTCCTGCAATGCGGGATGTTTCAGAGTCACATTCAGCCAAAGTCCTCGAGGTGGCAACCGGAGAAAACAAGACTGGCAAGATAAATTCAAAAAGTTGA

mRNA sequence

ATGGAGGCGCCTCCGCCCTCCTTTGTTTCCAAACCCAGGACTGCCTTCCATTCCGCGGCTCCTAAAACGGACCCACTTTTCTTCCTCTTTAAATCCAATTCACCAGGATCTCCTAAAACCATCCCACCACCACACTTCCCACAATCAACACCAGATAAGGAGTCACATTCAGCCAAAGTCCTCGAGGTGGCAACCGGAGAAAACAAGACTGGCAAGATAAATTCAAAAAGTTGA

Coding sequence (CDS)

ATGGAGGCGCCTCCGCCCTCCTTTGTTTCCAAACCCAGGACTGCCTTCCATTCCGCGGCTCCTAAAACGGACCCACTTTTCTTCCTCTTTAAATCCAATTCACCAGGATCTCCTAAAACCATCCCACCACCACACTTCCCACAATCAACACCAGATAAGGAGTCACATTCAGCCAAAGTCCTCGAGGTGGCAACCGGAGAAAACAAGACTGGCAAGATAAATTCAAAAAGTTGA

Protein sequence

MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSPGSPKTIPPPHFPQSTPDKESHSAKVLEVATGENKTGKINSKS

Homology

[Close]

BLAST of Csor.00g204210 vs. NCBI nr
Match: KAG6596933.1 (hypothetical protein SDJN03_10113, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154 bits (390), Expect = 2.78e-47
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSPGSPKTIPPPHFPQSTPDKESHSAKV 60
          MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSPGSPKTIPPPHFPQSTPDKESHSAKV
Sbjct: 1  MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSPGSPKTIPPPHFPQSTPDKESHSAKV 60

Query: 61 LEVATGENKTGKINSKS 77
          LEVATGENKTGKINSKS
Sbjct: 61 LEVATGENKTGKINSKS 77

[Close]

BLAST of Csor.00g204210 vs. NCBI nr
Match: KAG7028413.1 (hypothetical protein SDJN02_09594, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105 bits (261), Expect = 8.25e-28
Identity = 59/77 (76.62%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 1  MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSPGSPKTIPPPHFPQSTPDKESHSAKV 60
          MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSP                  ESHSAKV
Sbjct: 1  MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSP------------------ESHSAKV 59

Query: 61 LEVATGENKTGKINSKS 77
          LEVATGENKTGKINSKS
Sbjct: 61 LEVATGENKTGKINSKS 59

[Close]

BLAST of Csor.00g204210 vs. NCBI nr
Match: XP_022151309.1 (uncharacterized protein LOC111019274 isoform X2 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 6.39e-07
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 1  MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSPGSPKTIP-----PPHFPQSTPDKE- 57
          MEAPPPSFVSK RTAFHSAA K + +FF FKS+     K +P     PPH   ST + E 
Sbjct: 1  MEAPPPSFVSKARTAFHSAAAKAERVFFDFKSDRGDFDKRLPEDLVTPPHEQISTNEHEI 60

[Close]

BLAST of Csor.00g204210 vs. NCBI nr
Match: XP_022151307.1 (uncharacterized protein LOC111019274 isoform X1 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 6.39e-07
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 1  MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSPGSPKTIP-----PPHFPQSTPDKE- 57
          MEAPPPSFVSK RTAFHSAA K + +FF FKS+     K +P     PPH   ST + E 
Sbjct: 1  MEAPPPSFVSKARTAFHSAAAKAERVFFDFKSDRGDFDKRLPEDLVTPPHEQISTNEHEI 60

[Close]

BLAST of Csor.00g204210 vs. ExPASy TrEMBL
Match: A0A6J1DCM4 (Rab3 GTPase-activating protein catalytic subunit OS=Momordica charantia OX=3673 GN=LOC111019274 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.09e-07
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 1  MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSPGSPKTIP-----PPHFPQSTPDKE- 57
          MEAPPPSFVSK RTAFHSAA K + +FF FKS+     K +P     PPH   ST + E 
Sbjct: 1  MEAPPPSFVSKARTAFHSAAAKAERVFFDFKSDRGDFDKRLPEDLVTPPHEQISTNEHEI 60

[Close]

BLAST of Csor.00g204210 vs. ExPASy TrEMBL
Match: A0A6J1DD43 (Rab3 GTPase-activating protein catalytic subunit OS=Momordica charantia OX=3673 GN=LOC111019274 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.09e-07
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 1  MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSPGSPKTIP-----PPHFPQSTPDKE- 57
          MEAPPPSFVSK RTAFHSAA K + +FF FKS+     K +P     PPH   ST + E 
Sbjct: 1  MEAPPPSFVSKARTAFHSAAAKAERVFFDFKSDRGDFDKRLPEDLVTPPHEQISTNEHEI 60

The following BLAST results are available for this feature:

BLAST of Csor.00g204210 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g204210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596933.1	2.78e-47	100.00	hypothetical protein SDJN03_10113, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7028413.1	8.25e-28	76.62	hypothetical protein SDJN02_09594, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022151309.1	6.39e-07	56.25	uncharacterized protein LOC111019274 isoform X2 [Momordica charantia]	[more]
XP_022151307.1	6.39e-07	56.25	uncharacterized protein LOC111019274 isoform X1 [Momordica charantia]	[more]

BLAST of Csor.00g204210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCM4	3.09e-07	56.25	Rab3 GTPase-activating protein catalytic subunit OS=Momordica charantia OX=3673 ...	[more]
A0A6J1DD43	3.09e-07	56.25	Rab3 GTPase-activating protein catalytic subunit OS=Momordica charantia OX=3673 ...	[more]

BLAST of Csor.00g204210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g204210.m01	Csor.00g204210.m01	mRNA