Csor.00g202870 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g202870
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	regulator of nonsense transcripts UPF3-like isoform X1
Location	Csor_Chr01: 4812407 .. 4816905 (-)
RNA-Seq Expression	Csor.00g202870
Synteny	Csor.00g202870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTCCCTCACTCGGATCTCTTCCACCATATTCATGATCGCTTCGCCGGTCGCTACAATTCCTGTTACTATCGTCCCGGAAAGACCAGGTTCCACTTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCTCTAATTTCCTTCTAATTTCATCTTTCCCGCACATAAATTAGTATTACCAACTGGGTTTTCAGTTTCCACAAATCTGGAGCTTCACTTAGCCTAACCGCGTACTGGGTATTTCTCTTTCTCCTTTTTCCCCCTTCCTCCTTACTGGGGTTGGGGGGTTTCTCTCATTACAATCATGTTCACCACTTCTTTCTCCTTCCTCCAATTTGGGTTTTCCTCATTACCAATGCCCCTTACTTACTATACTTCCTGCTTTTTCTTCTCTTTTGTCTTGGATTCTCTGGACTAAGCCTCACAATACTGAAACTTTTTTACTCATTCAGAGGTTTCTTCTGAAATAATTTTGCAGTCAGAAGGAGCAGAGGTACGCTCGAGCCTACATCGATTTTACCATACCTGAAGATGTTTTTGAGTTTGCGGAGTTTTTTGATGGCCATGTTTTCGTCAATGAGAAGGGTAAAGATGACACCTTTTTTTGTAGCTCAATTCTTTTCTGATAAGTGGTAGATAACAATTTTATGCTTAATGCTGATTGATGATATATGTAGAGATTACATTACCCCTTTTAAAGCTTAGTTTTTAATTGACTGCATACCAGTTTAGCTTATTTCAGTTAAATGGTTACAGGTGCTCAGTATAAGGCTGTAGTTGAATATGCTCCTTCACAGCGTGTTCCGAGGTCGTCTTCTAAGAAGGATGGTCGTGAGGGGACTATATACAAAGGTAAGCATCGGTTAGTGAGAAGATGGAATAAGTGGTTGTTCTTGTTTTATATTGCATATTGTGTTATGTGAACTATCTTTTCTTGATGAAAGCAGATCCAGATTATTTGGAGTTTTTAAAACTCATTGCCAAGCCTACCGAGCATCTTCCAAGTGCAGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATCTGGTTTGTTATTATGTTCATGGACGACTTGTTGACGTTTGTTGCATTTGTTAAATCTTATGTGGAACGAGGCCAAATAAGTTATATAATGTAAAATAGGGTGCCAAAAAGTTGCTGAGTAGTCATTCTGTAACTTCGCTATGAACTTTTGTTTTGCTACTCGGTTCATAACCTCGAGGTGGTGTGGCATGAGATACTACTCGGTTCAAATTCGGATAGTCTAGAAGTTTTATATGCCTACTTTTGTTTTGCAGGTGTTGCAAAAGATACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGTGGAACTCAGGTGATATTCTTAACACATCGACCTGTGTGCTATATCTTAAAATTTCAGAGAAAATGAAACTACTTGTTTACAAAAATGAAGGTCACAAGGTATTGGTTCTGTCTGACCCACCCATATTAATATTTATACATTCACTTACCATTAAGTTGACATTTCTTCGTTTGAATTTGTCTGCTGCTTGTGTAACGATTTCAGCTTCTTTTCCTTTCTTATGAGTTAACGACATGCATGCTATTAATTCCGATGCTCTTAGGATGGTTGTCTATGTGGTCTTGAATATTTTTATTCATAATACATCAATTTCTCACTATCTCATGTAAGTTTTTTCATTCAATAGGGTTCTTCAGTGCCTCGGAAGGTTAAAAGAGGTGTTGCAGCATCCTCTAGAAAACATGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGGCATGTCCTACTTTTCCAATGTTTTGTTTTTCCTAAGGTTTTTAGAGTTCGTAAATGTTAGTTTCTTAGGGGAAGTATGCTGTCTTGTCTTGTCGTAGATCTCAGAAACGAATGAAGAATAAGACCTAAAGGATGATTATAAAAATCCTTAAAGAGAGGCATTCGACCTAGTGAAGGATCCAACGAGTCCCAAGAACTCTCGAAACCTTTTAAGATTCTCTTGTTACTCTCTAGCCATATTCCGTTAAGCGGCAAGAAACTAGTGAAATATTTTATGACCTCGATCTAACCACAATCTTTATGACAAACCAAGAAAACTCCTAAGGCCTCAAAAAAAGTTGTAAATCAAGGTATCAAAAGGATATGATCTAGTTCCTCGAACACTCGTGATTTTAACCATTTTAGAATTACTTCCAAACATGCCCTAAAAATGCATTGGTGGTATGGCCTCAACACAAAGGAACATGGCCTCTGTATTTAGTCTATGGTGTTAACTCCCTAATGCAAGTTCTGCCACTCTCAAAACTTGATCTTCTATGAAATTCTTACCTTCTACAATGAGGTGAAGCAGAAAATAATTAATACAGAGCCTAAAGTTTCGACTCTACCAAACTCAACCTAAAGTTTCTAATGTTATTGGTGGGATAGTATTTATATGATTTAAGTTTTGTCTAACTGGGATTGAAACTGTCTCATGCCACACCACCTCGAGGTTATGAACAGTGAGCGCTAAAATTGAGCCTTTAGGTTAGCCCCCTTAAATTTCATGCTTTTACTGTGGTGATCCTTTCTTGTGAATAATTTTATAGTCTTATCTTTTTGGTCTGAAGATTTTAGTTATATTTTCTTTTATACATGCAGTATATTTTGAAGGACAGTGGGAAGAACACGAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCGAGGCGAGAGGATCAGTCAGCCACTTCAAGTGGAATTGGAATTTCTGACGTTGGTACAGGTTAGATTTCTTTGTGATCAGCAACATTATTTAAGTTGCCACTTTTCTTATCCTTCTCAGTTACTGGTCCATTGATTGTTAGACTGTTGAAAATGAGTCTAATTTATGTTATCTCAGCGATTCTATGCTTCAAGTCATTAGGAGCAGGGGAACATTAGCCTATATGGTTTAAGATCTGAACACTTGTTATTCCACTGCCTATAATGGGGCGAGCTCTCATAACTATTTTACGTTTTTCGCATTGCTAATTACCCTGAGCCCAGTAGTAATGTTCTTGAAAATGTCTTTCCCCCACCCCCTTGATTAGTAATTATCTTGTTTATTTCTTGGACTTTGTCATATTGTGATGTGCAGATCACAAACTTGCATGTTAACATATACATTATTAGCTATGCAGCACATATCCATTGTTGTATTATATTATGTCCATCAGGAAAAGAGGGAGAAAACAATGTCCTCCATTAGATAATGCATTCTCCTGCATATCAATATGTTCTACATATTTATAACGAATTCGTCGTCTAGATTTGAAGGCTCTGTTTCATATGTCTATGTAACAGCCGACTCTGGAAAGAAAAAAATTCTGCTTCTCAAAGGGAAAGGGCGAGACGTATCTCATGTATGTTTCTTAAGTTCTCTTATGTTATTACATCTTTTGTTGATCTCTTTCTCTTTAGATATTAACTTCTGTGAATGATCTCAATTCTCACTCTAGTCTAACGTTGGGAGGGTACAAATTCTGTTCTTTTGCCTCATATTTTGACACTTACCTTATCTAGTTCATGCATAATGATACCTTTACAGATTGCTGATGGCATGTTACAGTTTCAGAGCGCGACATCTTCTGGGAATTCTCCTGCTAATGCTACAAAACAGAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATTCTTTTAAATAATGATGCACGTCATGGACAGAGTTCATCAGTAGCCCAGTCTCACCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTTCCATTAATTCTCGATCTGGGTCTAATGATATGTCCAGTAATGATCCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGGTATGGAAAATAAGTTTAACAAAAAGGAACATCATGGCCTGGGTAATGCTAGTGAGAAGCAAGAAAAACGAATTAGAAACAAAGATAGACCTGATCGTGGGGTTTGGGCACCACGTGGTCGTTCAGATGCCTCAGTCTCACAACTTGATGAATCCTCTGTTTCACAATCTACTCATTTGCTTTCTGACTCGGTTGAAGGTACTATTACTATTATAACCCATTGGGGATGACGAGACTACTTGCTTGTGTATTATACTGGACGATGATCGAAGTATGTGTTCCAGATATGAAATTATAACTCTAATTGTCTTTAATGCCTTTACAGCATACCGTGGGGAAATGAAAGATGATGTTCATGGAAGCAGGACTGGGGATGTTACAACCACTGTGAGTGGACGTAGCAGTTCAGTGGAGAATGGTTATACTTTCTCACAAACCTTCTTTACATTGTCCATCATTTATTTTAGGAGATATCCAAAGTTACTCACCTTCTGTGCTTCTCTAGGTTGGTTAGACATGTTGGGCGTCGTGGGGCTGTCCATATTATGA

mRNA sequence

ATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTCCCTCACTCGGATCTCTTCCACCATATTCATGATCGCTTCGCCGGTCGCTACAATTCCTGTTACTATCGTCCCGGAAAGACCAGTCAGAAGGAGCAGAGGTACGCTCGAGCCTACATCGATTTTACCATACCTGAAGATGTTTTTGAGTTTGCGGAGTTTTTTGATGGCCATGTTTTCGTCAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCTCCTTCACAGCGTGTTCCGAGGTCGTCTTCTAAGAAGGATGGTCGTGAGGGGACTATATACAAAGATCCAGATTATTTGGAGTTTTTAAAACTCATTGCCAAGCCTACCGAGCATCTTCCAAGTGCAGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATCTGGTGTTGCAAAAGATACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGTGGAACTCAGGGTTCTTCAGTGCCTCGGAAGGTTAAAAGAGGTGTTGCAGCATCCTCTAGAAAACATGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGTATATTTTGAAGGACAGTGGGAAGAACACGAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCGAGGCGAGAGGATCAGTCAGCCACTTCAAGTGGAATTGGAATTTCTGACGTTGGTACAGCCGACTCTGGAAAGAAAAAAATTCTGCTTCTCAAAGGGAAAGGGCGAGACGTATCTCATTTTCAGAGCGCGACATCTTCTGGGAATTCTCCTGCTAATGCTACAAAACAGAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATTCTTTTAAATAATGATGCACGTCATGGACAGAGTTCATCAGTAGCCCAGTCTCACCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTTCCATTAATTCTCGATCTGGGTCTAATGATATGTCCAGTAATGATCCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGGTATGGAAAATAAGTTTAACAAAAAGGAACATCATGGCCTGGGTAATGCTAGTGAGAAGCAAGAAAAACGAATTAGAAACAAAGATAGACCTGATCGTGGGGTTTGGGCACCACGTGGTCGTTCAGATGCCTCAGTCTCACAACTTGATGAATCCTCTGTTTCACAATCTACTCATTTGCTTTCTGACTCGGTTGAAGCATACCGTGGGGAAATGAAAGATGATGTTCATGGAAGCAGGACTGGGGATGTTACAACCACTGTGAGTGGACGTAGCAGTTCAGTGGAGAATGACATGTTGGGCGTCGTGGGGCTGTCCATATTATGA

Coding sequence (CDS)

ATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTCCCTCACTCGGATCTCTTCCACCATATTCATGATCGCTTCGCCGGTCGCTACAATTCCTGTTACTATCGTCCCGGAAAGACCAGTCAGAAGGAGCAGAGGTACGCTCGAGCCTACATCGATTTTACCATACCTGAAGATGTTTTTGAGTTTGCGGAGTTTTTTGATGGCCATGTTTTCGTCAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCTCCTTCACAGCGTGTTCCGAGGTCGTCTTCTAAGAAGGATGGTCGTGAGGGGACTATATACAAAGATCCAGATTATTTGGAGTTTTTAAAACTCATTGCCAAGCCTACCGAGCATCTTCCAAGTGCAGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATCTGGTGTTGCAAAAGATACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGTGGAACTCAGGGTTCTTCAGTGCCTCGGAAGGTTAAAAGAGGTGTTGCAGCATCCTCTAGAAAACATGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGTATATTTTGAAGGACAGTGGGAAGAACACGAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCGAGGCGAGAGGATCAGTCAGCCACTTCAAGTGGAATTGGAATTTCTGACGTTGGTACAGCCGACTCTGGAAAGAAAAAAATTCTGCTTCTCAAAGGGAAAGGGCGAGACGTATCTCATTTTCAGAGCGCGACATCTTCTGGGAATTCTCCTGCTAATGCTACAAAACAGAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATTCTTTTAAATAATGATGCACGTCATGGACAGAGTTCATCAGTAGCCCAGTCTCACCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTTCCATTAATTCTCGATCTGGGTCTAATGATATGTCCAGTAATGATCCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGGTATGGAAAATAAGTTTAACAAAAAGGAACATCATGGCCTGGGTAATGCTAGTGAGAAGCAAGAAAAACGAATTAGAAACAAAGATAGACCTGATCGTGGGGTTTGGGCACCACGTGGTCGTTCAGATGCCTCAGTCTCACAACTTGATGAATCCTCTGTTTCACAATCTACTCATTTGCTTTCTGACTCGGTTGAAGCATACCGTGGGGAAATGAAAGATGATGTTCATGGAAGCAGGACTGGGGATGTTACAACCACTGTGAGTGGACGTAGCAGTTCAGTGGAGAATGACATGTTGGGCGTCGTGGGGCTGTCCATATTATGA

Protein sequence

MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDFTIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLEFLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENDMLGVVGLSIL

Homology

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BLAST of Csor.00g202870 vs. ExPASy Swiss-Prot
Match: Q9FVW4 (Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana OX=3702 GN=UPF3 PE=1 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 5.8e-96
Identity = 221/477 (46.33%), Postives = 286/477 (59.96%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MK+PL++ KVV+RHLPPSL  SDL   I  RFA RYN   +RPGK+S K Q+Y+RAY+ F
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
             PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDYLE
Sbjct: 61  KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLE 120

Query: 121 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQG-SSVP 180
           FLK+IA+P E+LPSAEIQLER+EAEQSG +K  PIVTPLMEF+RQKRA   G QG S + 
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSDIR 180

Query: 181 RKVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSG 240
           R  +R    S+ K      KR  EKKKY+ K+S KN  R+  ++ +   + + + + SSG
Sbjct: 181 RGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPRKTTAD-VSSSKPDYRQSNSSG 240

Query: 241 -----------IGISDVG---TADSGKKKILLLKGKGRD---------VSHFQSATSSGN 300
                      I  S  G   T DSGKKKILLL+ K RD           H  +  S  +
Sbjct: 241 KELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHIDTNLSRNS 300

Query: 301 SPANATKQNQRREAGGSMIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINS 360
           +    ++QNQ+ + GG +I+ ILL ND+R  QSS+  QS Q+++   ++N KRP R  N+
Sbjct: 301 TD---SRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRPANT 360

Query: 361 RSGSNDMSSNDPNPSGSEGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWA 420
           R+G                            K++H  G  SEKQE+R RNKDRPDR +WA
Sbjct: 361 RAG----------------------------KDYHTSGTISEKQERRTRNKDRPDRVMWA 420

Query: 421 PR--GRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRS 452
           PR  G  D  +S    +                 GE+KD +   R+G+V  +  G +
Sbjct: 421 PRRDGSEDQPLSSAGNN-----------------GEVKDRMFSQRSGEVVNSSGGHT 428

[Close]

BLAST of Csor.00g202870 vs. ExPASy Swiss-Prot
Match: B0S733 (Regulator of nonsense transcripts 3A OS=Danio rerio OX=7955 GN=upf3a PE=1 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 7.8e-16
Identity = 110/403 (27.30%), Postives = 177/403 (43.92%), Query Frame = 0


Query: 8   TKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDFTIPEDVF 67
           +KVVIR LPPSL    L  H+    +  Y   +  P   S     ++RAYI+F  PED+ 
Sbjct: 43  SKVVIRRLPPSLSKDQLQEHLSPLPSFDYFEFF--PADQSLYPHLFSRAYINFKNPEDII 102

Query: 68  EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS-SKKDGREGTIYKDPDYLEFL---- 127
            F + FDG+VF++ KG +Y AVVE+AP Q+V +    KKD + GTI +DP+Y  FL    
Sbjct: 103 IFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLENYS 162

Query: 128 ----KLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSV 187
               K +A P   L   EI+ + +E     +AK T   TPL+E+++ K+  +   +    
Sbjct: 163 CDEEKSMANPETLL--GEIEAKTREL----IAKRT---TPLLEYIKNKKLEKQRIREEKR 222

Query: 188 PRKVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSS 247
             + +R +    ++ E    +R  E++K   K++ K     +K   I + ++ D+     
Sbjct: 223 EERRRRELEKKRQREEEKRKRREEERQK--RKEAEKQKKLSEKEIKIKLLKKCDRDDDVD 282

Query: 248 GIGISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSI 307
              + D G  DSG+ +    K +         +  S ++ +      ++RE  G   R  
Sbjct: 283 SDRLKDKG--DSGETE----KNRWEKPGGHTKSKDSKDNRSQMENDKEQREGHGRRQR-- 342

Query: 308 LLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGK 367
             + D R        Q H        D   R         G     +      G     +
Sbjct: 343 --DKDHRGRDEERKRQRHH----YEFDKFMRRKEETKWGKGYCQDRAKKDQHHGYSYCPE 402

Query: 368 RGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRS 402
            G  +K  K++   +G+  E    RIRNKDRP   ++ P  R+
Sbjct: 403 TG--DKLGKEDREDMGSRKE----RIRNKDRPAMQLYQPGARN 412

[Close]

BLAST of Csor.00g202870 vs. ExPASy Swiss-Prot
Match: Q9BZI7 (Regulator of nonsense transcripts 3B OS=Homo sapiens OX=9606 GN=UPF3B PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.9e-15
Identity = 118/438 (26.94%), Postives = 183/438 (41.78%), Query Frame = 0


Query: 8   TKVVIRHLPPSLPHSDLFHHI-----HDRFAGRYNSCYYRPGKTSQKEQRYARAYIDFTI 67
           +KVVIR LPP+L    L  H+     HD F        +    TS     YARAYI+F  
Sbjct: 51  SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFE-------FFSNDTSLYPHMYARAYINFKN 110

Query: 68  PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKK-DGREGTIYKDPDYLEF 127
            ED+  F + FDG+VF++ KG +Y A+VE+AP Q+  +  +KK D + GTI  DP+Y +F
Sbjct: 111 QEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKF 170

Query: 128 LKLIAKPTEHLPSA-EIQLERKEAE-QSGVAKDTPIVTPLMEFVRQKRAVESGTQGS--- 187
           L+  A   E + S  E  LE  EA+ +  +AK T   TPL+ F++ K+ +    +     
Sbjct: 171 LESYATDNEKMTSTPETLLEEIEAKNRELIAKKT---TPLLSFLKNKQRMREEKREERRR 230

Query: 188 -SVPRKVKRGVAASSRKHESNSMKRGMEKKKYI--------LKDSGKNTNRR------DK 247
             + RK +R       K E    ++ +EK K I        LKD  K    R      ++
Sbjct: 231 REIERKRQREEERRKWKEEEKRKRKDIEKLKKIDRIPERDKLKDEPKIKVHRFLLQAVNQ 290

Query: 248 SNFILVPRREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANA 307
            N +  P + D+                  K K L  +    + +  QS T    S +  
Sbjct: 291 KNLLKKPEKGDEKELDK-----------REKAKKLDKENLSDERASGQSCTLPKRSDSEL 350

Query: 308 TKQNQRREAGGSMIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSN 367
             +  +R    S  R               + +  ++++    +  ++  R    ++   
Sbjct: 351 KDEKPKRPEDESG-RDYREREREYERDQERILRERERLKRQEEERRRQKERYEKEKT--- 410

Query: 368 DMSSNDPNPSGSEGDGKRGMENKFNKKEHHGLGNASEKQEK-----RIRNKDRPDRGVWA 415
                       E D  R    K    E  G    +EK+E+     RIRNKDRP   ++ 
Sbjct: 411 --FKRKEEEMKKEKDTLRDKGKKAESTESIGSSEKTEKKEEVVKRDRIRNKDRPAMQLYQ 461

[Close]

BLAST of Csor.00g202870 vs. ExPASy Swiss-Prot
Match: Q9H1J1 (Regulator of nonsense transcripts 3A OS=Homo sapiens OX=9606 GN=UPF3A PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-11
Identity = 99/409 (24.21%), Postives = 172/409 (42.05%), Query Frame = 0


Query: 8   TKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDFTIPEDVF 67
           +KVVIR LPP L    L   +    A  Y   +      S     Y+RAYI+F  P+D+ 
Sbjct: 68  SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF--AADLSLYPHLYSRAYINFRNPDDIL 127

Query: 68  EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS-SKKDGREGTIYKDPDYLEFLKLIA 127
            F + FDG++F++ KG +Y AVVE+AP Q++ +    KKD + G+I  DP+Y +FL+   
Sbjct: 128 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYC 187

Query: 128 KPTEHL-PSAEIQLERKEAE-QSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPRKVKR 187
              E    + E  L   EA+ +  +A+ T   TPL+E+++ ++  +   +      + +R
Sbjct: 188 VEEEKTSANPETLLGEMEAKTRELIARRT---TPLLEYIKNRKLEKQRIREEKREERRRR 247

Query: 188 GVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRD-KSNFILVPRREDQSATSSGIGIS 247
            +     + E    +R  E+ K    D  K    ++ +   +  P + ++  T       
Sbjct: 248 ELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGEEPTTEK----- 307

Query: 248 DVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILLNND 307
                + G++   +  G G+  S    A         + ++ Q     GS         D
Sbjct: 308 ---PKERGEE---IDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGS---------D 367

Query: 308 ARHGQSSSVAQSHQKIQILNSDNGKR-----PPRSINSRSGSNDMSSNDPNPSGSEGDGK 367
             H       +   + Q  + D+G+R      P  ++ RS         P     +  GK
Sbjct: 368 KEHRDVERSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGP----GQDRGK 427

Query: 368 RGMENKFNKKE-HHGLGNASE------KQEKRIRNKDRPDRGVWAPRGR 401
           +G ++     E    LG A         +++R+ NKDRP   ++ P  R
Sbjct: 428 KGSQDSGAPGEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGAR 447

[Close]

BLAST of Csor.00g202870 vs. ExPASy Swiss-Prot
Match: Q10267 (Nonsense-mediated mRNA decay protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=upf3 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-09
Identity = 68/267 (25.47%), Postives = 116/267 (43.45%), Query Frame = 0


Query: 9   KVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTS--QKEQRYARAYIDFTIPEDV 68
           KV++ +LPP+LP       I+  F        +  GK +   + +  + AY+ F     V
Sbjct: 13  KVLVFNLPPTLPEQVFLQSINS-FLPHVEWHRFSKGKATVGTRSELLSFAYLKFQSATAV 72

Query: 69  FEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLEFLKLIA 128
            EF   + GH F+++K   Y+A+V  AP Q++P S  K D  EG++ +DP + EF     
Sbjct: 73  QEFFRVYQGHTFIDKKNNTYRAIVTIAPYQKIPPSKVKADSLEGSLEQDPKFQEF----- 132

Query: 129 KPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKR--AVESG---TQGSSVPRK 188
                    + +   + A    V +     TPL++++ +K+   VE G       SV  K
Sbjct: 133 -------KVQRESYSQTASNDDVIEKLQTSTPLLQYLAEKKNAVVEKGKSKPSKKSVKAK 192

Query: 189 VKRGVAASSRKHESNSMKRGMEKKK----------YILKDSGKNTNRRDKSNFILVPRRE 248
            K  +A     + S + K   E KK           ++K+   +  ++ K      P   
Sbjct: 193 KKLRLAEKPASNNSKAGKSSQESKKSSKAPAESAAAVIKEDKVSDRKKSKKKPKKTP-VS 252

Query: 249 DQSATSSGIGISDVGTAD---SGKKKI 256
           + +A+ +    SD  T +   SGK+KI
Sbjct: 253 NSTASQASENASDKKTKEKKSSGKQKI 265

[Close]

BLAST of Csor.00g202870 vs. NCBI nr
Match: KAG6607496.1 (Regulator of nonsense transcripts UPF3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 893 bits (2308), Expect = 0.0
Identity = 467/467 (100.00%), Postives = 467/467 (100.00%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240
           KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240

Query: 241 GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL 300
           GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL
Sbjct: 241 GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL 300

Query: 301 NNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRG 360
           NNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRG
Sbjct: 301 NNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRG 360

Query: 361 MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL 420
           MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL
Sbjct: 361 MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL 420

Query: 421 SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENDMLGVVGLSIL 467
           SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENDMLGVVGLSIL
Sbjct: 421 SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENDMLGVVGLSIL 467

[Close]

BLAST of Csor.00g202870 vs. NCBI nr
Match: XP_023523936.1 (regulator of nonsense transcripts UPF3-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 871 bits (2250), Expect = 0.0
Identity = 456/463 (98.49%), Postives = 457/463 (98.70%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKP EHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240
           KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240

Query: 241 GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL 300
           GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL
Sbjct: 241 GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL 300

Query: 301 NNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRG 360
           NNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKR 
Sbjct: 301 NNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRA 360

Query: 361 MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL 420
           MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL
Sbjct: 361 MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL 420

Query: 421 SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENDMLGVVG 463
           SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVEN  +  VG
Sbjct: 421 SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVG 463

[Close]

BLAST of Csor.00g202870 vs. NCBI nr
Match: XP_022948757.1 (regulator of nonsense transcripts UPF3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 869 bits (2245), Expect = 0.0
Identity = 455/463 (98.27%), Postives = 456/463 (98.49%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKP EHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240
           KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240

Query: 241 GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL 300
           GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL
Sbjct: 241 GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL 300

Query: 301 NNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRG 360
           NNDARHGQSSSVAQSHQKIQILNSDNGKRPPR INSRSGSNDMSSNDPNPSGSEGDGKR 
Sbjct: 301 NNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGSEGDGKRA 360

Query: 361 MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL 420
           MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL
Sbjct: 361 MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL 420

Query: 421 SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENDMLGVVG 463
           SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVEN  +  VG
Sbjct: 421 SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVG 463

[Close]

BLAST of Csor.00g202870 vs. NCBI nr
Match: XP_022973413.1 (regulator of nonsense transcripts UPF3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 865 bits (2234), Expect = 7.59e-315
Identity = 453/463 (97.84%), Postives = 455/463 (98.27%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYN CY+RPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNWCYFRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKP EHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240
           KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240

Query: 241 GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL 300
           GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL
Sbjct: 241 GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL 300

Query: 301 NNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRG 360
           NNDARHGQSSSVAQSHQKIQILNSDNGKRPPR INSRSGSNDMSSNDPNPSGSEGDGKR 
Sbjct: 301 NNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGSEGDGKRA 360

Query: 361 MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL 420
           MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL
Sbjct: 361 MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL 420

Query: 421 SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENDMLGVVG 463
           SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVEN  +  VG
Sbjct: 421 SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVG 463

[Close]

BLAST of Csor.00g202870 vs. NCBI nr
Match: XP_023523934.1 (regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 864 bits (2232), Expect = 2.25e-314
Identity = 456/470 (97.02%), Postives = 457/470 (97.23%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKP EHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240
           KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240

Query: 241 GISDVGTADSGKKKILLLKGKGRDVSH-------FQSATSSGNSPANATKQNQRREAGGS 300
           GISDVGTADSGKKKILLLKGKGRDVSH       FQSATSSGNSPANATKQNQRREAGGS
Sbjct: 241 GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS 300

Query: 301 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGS 360
           MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGS
Sbjct: 301 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGS 360

Query: 361 EGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 420
           EGDGKR MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV
Sbjct: 361 EGDGKRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 420

Query: 421 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENDMLGVVG 463
           SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVEN  +  VG
Sbjct: 421 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVG 470

[Close]

BLAST of Csor.00g202870 vs. ExPASy TrEMBL
Match: A0A6J1GA46 (regulator of nonsense transcripts UPF3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452331 PE=3 SV=1)

HSP 1 Score: 869 bits (2245), Expect = 0.0
Identity = 455/463 (98.27%), Postives = 456/463 (98.49%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKP EHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240
           KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240

Query: 241 GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL 300
           GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL
Sbjct: 241 GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL 300

Query: 301 NNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRG 360
           NNDARHGQSSSVAQSHQKIQILNSDNGKRPPR INSRSGSNDMSSNDPNPSGSEGDGKR 
Sbjct: 301 NNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGSEGDGKRA 360

Query: 361 MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL 420
           MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL
Sbjct: 361 MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL 420

Query: 421 SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENDMLGVVG 463
           SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVEN  +  VG
Sbjct: 421 SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVG 463

[Close]

BLAST of Csor.00g202870 vs. ExPASy TrEMBL
Match: A0A6J1ICZ5 (regulator of nonsense transcripts UPF3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471962 PE=3 SV=1)

HSP 1 Score: 865 bits (2234), Expect = 3.67e-315
Identity = 453/463 (97.84%), Postives = 455/463 (98.27%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYN CY+RPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNWCYFRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKP EHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240
           KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240

Query: 241 GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL 300
           GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL
Sbjct: 241 GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL 300

Query: 301 NNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRG 360
           NNDARHGQSSSVAQSHQKIQILNSDNGKRPPR INSRSGSNDMSSNDPNPSGSEGDGKR 
Sbjct: 301 NNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGSEGDGKRA 360

Query: 361 MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL 420
           MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL
Sbjct: 361 MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL 420

Query: 421 SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENDMLGVVG 463
           SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVEN  +  VG
Sbjct: 421 SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVG 463

[Close]

BLAST of Csor.00g202870 vs. ExPASy TrEMBL
Match: A0A6J1GA31 (regulator of nonsense transcripts UPF3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452331 PE=3 SV=1)

HSP 1 Score: 862 bits (2227), Expect = 6.09e-314
Identity = 455/470 (96.81%), Postives = 456/470 (97.02%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKP EHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240
           KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240

Query: 241 GISDVGTADSGKKKILLLKGKGRDVSH-------FQSATSSGNSPANATKQNQRREAGGS 300
           GISDVGTADSGKKKILLLKGKGRDVSH       FQSATSSGNSPANATKQNQRREAGGS
Sbjct: 241 GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS 300

Query: 301 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGS 360
           MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPR INSRSGSNDMSSNDPNPSGS
Sbjct: 301 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS 360

Query: 361 EGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 420
           EGDGKR MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV
Sbjct: 361 EGDGKRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 420

Query: 421 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENDMLGVVG 463
           SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVEN  +  VG
Sbjct: 421 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVG 470

[Close]

BLAST of Csor.00g202870 vs. ExPASy TrEMBL
Match: A0A6J1I7G4 (regulator of nonsense transcripts UPF3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471962 PE=3 SV=1)

HSP 1 Score: 858 bits (2216), Expect = 2.89e-312
Identity = 453/470 (96.38%), Postives = 455/470 (96.81%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYN CY+RPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNWCYFRPGKTSQKEQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKP EHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240
           KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240

Query: 241 GISDVGTADSGKKKILLLKGKGRDVSH-------FQSATSSGNSPANATKQNQRREAGGS 300
           GISDVGTADSGKKKILLLKGKGRDVSH       FQSATSSGNSPANATKQNQRREAGGS
Sbjct: 241 GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS 300

Query: 301 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGS 360
           MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPR INSRSGSNDMSSNDPNPSGS
Sbjct: 301 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS 360

Query: 361 EGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 420
           EGDGKR MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV
Sbjct: 361 EGDGKRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 420

Query: 421 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENDMLGVVG 463
           SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVEN  +  VG
Sbjct: 421 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVG 470

[Close]

BLAST of Csor.00g202870 vs. ExPASy TrEMBL
Match: A0A1S3CBX5 (regulator of nonsense transcripts UPF3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498712 PE=3 SV=1)

HSP 1 Score: 785 bits (2027), Expect = 1.35e-283
Identity = 413/463 (89.20%), Postives = 435/463 (93.95%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGR+N  YYRPGKTSQK+QRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
           T PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS+KKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKP EHLPSAEIQLERKEAEQSG AK+TPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240
           KVKRG AASSRK ESNSMKRGMEKKKYILKDS KNTNRRDKSNFILVPRR+DQSA SSGI
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRRDDQSANSSGI 240

Query: 241 GISDVGTADSGKKKILLLKGKGRDVSHFQSATSSGNSPANATKQNQRREAGGSMIRSILL 300
           GISDVG AD GKKKILLLKGK RD+SH QSATSSGNSPA+A+K N RREAGGS+IRSILL
Sbjct: 241 GISDVGAADFGKKKILLLKGKERDISHLQSATSSGNSPASASKHNHRREAGGSVIRSILL 300

Query: 301 NNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGSEGDGKRG 360
           NN+ARHGQSSSVAQSHQKIQILNSDNGKRPPR  N+RSGSND+SSN+PNPSGSEGDGKR 
Sbjct: 301 NNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDISSNEPNPSGSEGDGKRA 360

Query: 361 MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLL 420
            +NKF+KKE HGLG+ASEKQEKRIRNKDRPDRGVWAPR RSDASVSQL+ESSVSQS+HLL
Sbjct: 361 PDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLL 420

Query: 421 SDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENDMLGVVG 463
           SDSVEAYRGEMK+D+HGSRT DVTT VSGR+SSVEN  +  VG
Sbjct: 421 SDSVEAYRGEMKEDIHGSRTADVTTIVSGRNSSVENGSVRHVG 463

[Close]

BLAST of Csor.00g202870 vs. TAIR 10
Match: AT1G33980.1 (Smg-4/UPF3 family protein )

HSP 1 Score: 352.8 bits (904), Expect = 4.2e-97
Identity = 221/477 (46.33%), Postives = 286/477 (59.96%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60
           MK+PL++ KVV+RHLPPSL  SDL   I  RFA RYN   +RPGK+S K Q+Y+RAY+ F
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60

Query: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120
             PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDYLE
Sbjct: 61  KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLE 120

Query: 121 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQG-SSVP 180
           FLK+IA+P E+LPSAEIQLER+EAEQSG +K  PIVTPLMEF+RQKRA   G QG S + 
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSDIR 180

Query: 181 RKVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSG 240
           R  +R    S+ K      KR  EKKKY+ K+S KN  R+  ++ +   + + + + SSG
Sbjct: 181 RGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPRKTTAD-VSSSKPDYRQSNSSG 240

Query: 241 -----------IGISDVG---TADSGKKKILLLKGKGRD---------VSHFQSATSSGN 300
                      I  S  G   T DSGKKKILLL+ K RD           H  +  S  +
Sbjct: 241 KELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHIDTNLSRNS 300

Query: 301 SPANATKQNQRREAGGSMIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINS 360
           +    ++QNQ+ + GG +I+ ILL ND+R  QSS+  QS Q+++   ++N KRP R  N+
Sbjct: 301 TD---SRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRPANT 360

Query: 361 RSGSNDMSSNDPNPSGSEGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWA 420
           R+G                            K++H  G  SEKQE+R RNKDRPDR +WA
Sbjct: 361 RAG----------------------------KDYHTSGTISEKQERRTRNKDRPDRVMWA 420

Query: 421 PR--GRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRS 452
           PR  G  D  +S    +                 GE+KD +   R+G+V  +  G +
Sbjct: 421 PRRDGSEDQPLSSAGNN-----------------GEVKDRMFSQRSGEVVNSSGGHT 428

[Close]

BLAST of Csor.00g202870 vs. TAIR 10
Match: AT1G33980.2 (Smg-4/UPF3 family protein )

HSP 1 Score: 346.3 bits (887), Expect = 3.9e-95
Identity = 220/479 (45.93%), Postives = 285/479 (59.50%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKT--SQKEQRYARAYI 60
           MK+PL++ KVV+RHLPPSL  SDL   I  RFA RYN   +RPGK+    K Q+Y+RAY+
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSRLGYKNQKYSRAYV 60

Query: 61  DFTIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDY 120
            F  PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDY
Sbjct: 61  SFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDY 120

Query: 121 LEFLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQG-SS 180
           LEFLK+IA+P E+LPSAEIQLER+EAEQSG +K  PIVTPLMEF+RQKRA   G QG S 
Sbjct: 121 LEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSD 180

Query: 181 VPRKVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATS 240
           + R  +R    S+ K      KR  EKKKY+ K+S KN  R+  ++ +   + + + + S
Sbjct: 181 IRRGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPRKTTAD-VSSSKPDYRQSNS 240

Query: 241 SG-----------IGISDVG---TADSGKKKILLLKGKGRD---------VSHFQSATSS 300
           SG           I  S  G   T DSGKKKILLL+ K RD           H  +  S 
Sbjct: 241 SGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHIDTNLSR 300

Query: 301 GNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSI 360
            ++    ++QNQ+ + GG +I+ ILL ND+R  QSS+  QS Q+++   ++N KRP R  
Sbjct: 301 NSTD---SRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRPA 360

Query: 361 NSRSGSNDMSSNDPNPSGSEGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGV 420
           N+R+G                            K++H  G  SEKQE+R RNKDRPDR +
Sbjct: 361 NTRAG----------------------------KDYHTSGTISEKQERRTRNKDRPDRVM 420

Query: 421 WAPR--GRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRS 452
           WAPR  G  D  +S    +                 GE+KD +   R+G+V  +  G +
Sbjct: 421 WAPRRDGSEDQPLSSAGNN-----------------GEVKDRMFSQRSGEVVNSSGGHT 430

The following BLAST results are available for this feature:

BLAST of Csor.00g202870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FVW4	5.8e-96	46.33	Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana OX=3702 GN=UPF3 P...	[more]
B0S733	7.8e-16	27.30	Regulator of nonsense transcripts 3A OS=Danio rerio OX=7955 GN=upf3a PE=1 SV=2	[more]
Q9BZI7	3.9e-15	26.94	Regulator of nonsense transcripts 3B OS=Homo sapiens OX=9606 GN=UPF3B PE=1 SV=1	[more]
Q9H1J1	2.0e-11	24.21	Regulator of nonsense transcripts 3A OS=Homo sapiens OX=9606 GN=UPF3A PE=1 SV=1	[more]
Q10267	1.1e-09	25.47	Nonsense-mediated mRNA decay protein 3 OS=Schizosaccharomyces pombe (strain 972 ...	[more]

BLAST of Csor.00g202870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607496.1	0.0	100.00	Regulator of nonsense transcripts UPF3, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_023523936.1	0.0	98.49	regulator of nonsense transcripts UPF3-like isoform X2 [Cucurbita pepo subsp. pe...	[more]
XP_022948757.1	0.0	98.27	regulator of nonsense transcripts UPF3-like isoform X2 [Cucurbita moschata]	[more]
XP_022973413.1	7.59e-315	97.84	regulator of nonsense transcripts UPF3-like isoform X2 [Cucurbita maxima]	[more]
XP_023523934.1	2.25e-314	97.02	regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita pepo subsp. pe...	[more]

BLAST of Csor.00g202870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GA46	0.0	98.27	regulator of nonsense transcripts UPF3-like isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1ICZ5	3.67e-315	97.84	regulator of nonsense transcripts UPF3-like isoform X2 OS=Cucurbita maxima OX=36...	[more]
A0A6J1GA31	6.09e-314	96.81	regulator of nonsense transcripts UPF3-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1I7G4	2.89e-312	96.38	regulator of nonsense transcripts UPF3-like isoform X1 OS=Cucurbita maxima OX=36...	[more]
A0A1S3CBX5	1.35e-283	89.20	regulator of nonsense transcripts UPF3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of Csor.00g202870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33980.1	4.2e-97	46.33	Smg-4/UPF3 family protein	[more]
AT1G33980.2	3.9e-95	45.93	Smg-4/UPF3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..97 e-value: 3.5E-31 score: 109.4
IPR005120	UPF3 domain	PFAM	PF03467	Smg4_UPF3	coord: 6..168 e-value: 3.1E-49 score: 167.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..227
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 357..396
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 305..452
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 266..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 404..422
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 425..439
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 305..352
None	No IPR available	PANTHER	PTHR13112:SF5	REGULATOR OF NONSENSE TRANSCRIPTS UPF3	coord: 1..457
None	No IPR available	CDD	cd12455	RRM_like_Smg4_UPF3	coord: 9..94 e-value: 6.97451E-32 score: 115.042
IPR039722	Nonsense-mediated mRNA decay protein 3	PANTHER	PTHR13112	UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN	coord: 1..457
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g202870.m01	Csor.00g202870.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process	GO:0045727	positive regulation of translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding