Csor.00g201520 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g201520
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	peptidyl-tRNA hydrolase, chloroplastic
Location	Csor_Chr18: 9424 .. 10295 (-)
RNA-Seq Expression	Csor.00g201520
Synteny	Csor.00g201520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATTGCTGCTTCTCTATCTTCACTCGCCGCCCTGCGCCTTCCTGTTTGTCTCCATTGTTTCCGAACCTTCAGAACACCCATTTCCTTCCCTTCTCTATCCTTAAATCCCCCAAGTTTGCATATCTTTTCGTCGATGACTTCTTCCATTACTGCGTCCATGTCCACTTCCTCACCTCTGGCCCCCGATCTGCTCGCTTTGGAGGAGAACAAGCCCGCGCCGCCGCCCAAGCCATGGCTGATCGTTGGCCTTGGGAATCCCGGGAAGAAGTATGAACGCACGCGCCATAGTGTCCGTATGCTCCTATCTCTGCGTATACCAATTCAACTCTCTCCTTCTTTTGTACCATTTATTCTTTATTCCTTTTATATCGAGCGCCAGGGATTTTTCATTTCTCTTTTTCTTTTTCTTTTTCTTTTACCGACTCGACTGACTTTAAAGGATAGGGAATAGAGGTGAATGAAGGTTGAAGGCTCATGATTTTATTCATTTGAGTATTTGCGTGGAAAATTAAATTCTGTTTCACTGACAACTATGTTGATCTTATTTTCTATTGGGTTAACTGGGTATGTCGTTTATCGTGTGGAACCCCCTTAGGATAGGTTTCCGAGCATGCAATTGTGGTTATCTCGAGGAAATTATGATTTATGTTGATTTACAAAGCTGTGGAATGATATTTTATTTATTGCTGATTTTGTTATTAGCCATATAGAGTGTTGTCTGGATGCCCTTTATTAAGACGAATTGAAGCATGGCAGTCCGTGATGCCATGATTAATTTTCCAGGTAGGCTTTGAGATGGTGGATGCTGTTGCTGTGGTTGAAGGGATATCCATGAGTAGTGCTTCCTTCAAAGCTCTGATCGGGTAA

mRNA sequence

ATGAATATTGCTGCTTCTCTATCTTCACTCGCCGCCCTGCGCCTTCCTGTTTGTCTCCATTGTTTCCGAACCTTCAGAACACCCATTTCCTTCCCTTCTCTATCCTTAAATCCCCCAAGTTTGCATATCTTTTCGTCGATGACTTCTTCCATTACTGCGTCCATGTCCACTTCCTCACCTCTGGCCCCCGATCTGCTCGCTTTGGAGGAGAACAAGCCCGCGCCGCCGCCCAAGCCATGGCTGATCGTTGGCCTTGGGAATCCCGGGAAGAAGTATGAACGCACGCGCCATAGTGTCCGCTTTGAGATGGTGGATGCTGTTGCTGTGGTTGAAGGGATATCCATGAGTAGTGCTTCCTTCAAAGCTCTGATCGGGTAA

Coding sequence (CDS)

ATGAATATTGCTGCTTCTCTATCTTCACTCGCCGCCCTGCGCCTTCCTGTTTGTCTCCATTGTTTCCGAACCTTCAGAACACCCATTTCCTTCCCTTCTCTATCCTTAAATCCCCCAAGTTTGCATATCTTTTCGTCGATGACTTCTTCCATTACTGCGTCCATGTCCACTTCCTCACCTCTGGCCCCCGATCTGCTCGCTTTGGAGGAGAACAAGCCCGCGCCGCCGCCCAAGCCATGGCTGATCGTTGGCCTTGGGAATCCCGGGAAGAAGTATGAACGCACGCGCCATAGTGTCCGCTTTGAGATGGTGGATGCTGTTGCTGTGGTTGAAGGGATATCCATGAGTAGTGCTTCCTTCAAAGCTCTGATCGGGTAA

Protein sequence

MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSPLAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASFKALIG

Homology

[Close]

BLAST of Csor.00g201520 vs. ExPASy Swiss-Prot
Match: Q8GW64 (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g18440 PE=2 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 6.1e-16
Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 45  SSMTSSITASMSTSSPLAPDLLALEENKPAPPP--KPWLIVGLGNPGKKYERTRHSVRFE 104
           SS + S +++  +S P +  L AL  +KP  PP   PWLIVGLGNPGKKY+ TRH+V FE
Sbjct: 58  SSQSLSFSSNSFSSQPESELLQALPSSKPKSPPLQLPWLIVGLGNPGKKYQGTRHNVGFE 117

Query: 105 MVDAVAVVEGISMSSASFKALIG 126
           MVDA+A  EGISM++ +FKAL G
Sbjct: 118 MVDALADAEGISMNTVNFKALFG 140

[Close]

BLAST of Csor.00g201520 vs. ExPASy Swiss-Prot
Match: Q5N9Q7 (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0693900 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-12
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 78  KPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASFKALIG 126
           KPWL VGLGNPGK Y+ TRH+V FEM+D +A  EGIS+SS  FKA++G
Sbjct: 54  KPWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVG 101

[Close]

BLAST of Csor.00g201520 vs. ExPASy Swiss-Prot
Match: Q9LF14 (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRS2B PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-10
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 79  PWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASFKALIG 126
           PWLIVGLGNPG KY  TRH+V FEM+D +A  EG+ M++   KALIG
Sbjct: 45  PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIG 91

[Close]

BLAST of Csor.00g201520 vs. ExPASy Swiss-Prot
Match: Q5ZCL8 (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0132800 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.5e-10
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 79  PWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASFKALIG 126
           PWLI GLGNPG KY  TRH+V FEMVD +A  EGI+M++   K+L+G
Sbjct: 64  PWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLG 110

[Close]

BLAST of Csor.00g201520 vs. ExPASy Swiss-Prot
Match: Q10LI6 (CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0347800 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 79  PWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASFKALIG 126
           PWL VGLGNPG+KY+ TRH+V F+M+D  A  +GIS++   FKAL G
Sbjct: 60  PWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFG 106

[Close]

BLAST of Csor.00g201520 vs. NCBI nr
Match: KAG6572895.1 (Peptidyl-tRNA hydrolase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG6572897.1 Peptidyl-tRNA hydrolase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG6572927.1 Peptidyl-tRNA hydrolase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239 bits (609), Expect = 3.55e-79
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60
           MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP
Sbjct: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60

Query: 61  LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASF 120
           LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASF
Sbjct: 61  LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASF 120

Query: 121 KALIG 125
           KALIG
Sbjct: 121 KALIG 125

[Close]

BLAST of Csor.00g201520 vs. NCBI nr
Match: KAG6572896.1 (Peptidyl-tRNA hydrolase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 235 bits (599), Expect = 1.19e-77
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60
           MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNP SLHIFSSMTSSITASMSTSSP
Sbjct: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPLSLHIFSSMTSSITASMSTSSP 60

Query: 61  LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASF 120
           LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASF
Sbjct: 61  LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASF 120

Query: 121 KALIG 125
           KALIG
Sbjct: 121 KALIG 125

[Close]

BLAST of Csor.00g201520 vs. NCBI nr
Match: XP_022955054.1 (peptidyl-tRNA hydrolase, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 234 bits (598), Expect = 1.69e-77
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60
           MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP
Sbjct: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60

Query: 61  LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASF 120
           LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSV FEMVDAVAVVEGISMSS SF
Sbjct: 61  LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVGFEMVDAVAVVEGISMSSTSF 120

Query: 121 KALIG 125
           KALIG
Sbjct: 121 KALIG 125

[Close]

BLAST of Csor.00g201520 vs. NCBI nr
Match: XP_022954859.1 (peptidyl-tRNA hydrolase, chloroplastic-like isoform X2 [Cucurbita moschata] >XP_022954860.1 peptidyl-tRNA hydrolase, chloroplastic-like isoform X2 [Cucurbita moschata] >XP_022954861.1 peptidyl-tRNA hydrolase, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 232 bits (592), Expect = 4.35e-75
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60
           MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSS TASMSTSSP
Sbjct: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSFTASMSTSSP 60

Query: 61  LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASF 120
           LAPDLLA+EENKPAPPPKPWLIVGLGNPGKKYERTRH+V FEMVDAVAVVEGISMSSASF
Sbjct: 61  LAPDLLAVEENKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMVDAVAVVEGISMSSASF 120

Query: 121 KALIG 125
           KALIG
Sbjct: 121 KALIG 125

[Close]

BLAST of Csor.00g201520 vs. NCBI nr
Match: KAG6572934.1 (Peptidyl-tRNA hydrolase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233 bits (593), Expect = 1.25e-74
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60
           MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP
Sbjct: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60

Query: 61  LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASF 120
           LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRH+V FEMVDAVA VEGISMSSASF
Sbjct: 61  LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMVDAVAEVEGISMSSASF 120

Query: 121 KALIG 125
           KALIG
Sbjct: 121 KALIG 125

[Close]

BLAST of Csor.00g201520 vs. ExPASy TrEMBL
Match: A0A6J1GUU4 (peptidyl-tRNA hydrolase, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457131 PE=4 SV=1)

HSP 1 Score: 234 bits (598), Expect = 8.18e-78
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60
           MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP
Sbjct: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60

Query: 61  LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASF 120
           LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSV FEMVDAVAVVEGISMSS SF
Sbjct: 61  LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVGFEMVDAVAVVEGISMSSTSF 120

Query: 121 KALIG 125
           KALIG
Sbjct: 121 KALIG 125

[Close]

BLAST of Csor.00g201520 vs. ExPASy TrEMBL
Match: A0A6J1GTK7 (peptidyl-tRNA hydrolase, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456993 PE=3 SV=1)

HSP 1 Score: 232 bits (592), Expect = 2.11e-75
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60
           MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSS TASMSTSSP
Sbjct: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSFTASMSTSSP 60

Query: 61  LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASF 120
           LAPDLLA+EENKPAPPPKPWLIVGLGNPGKKYERTRH+V FEMVDAVAVVEGISMSSASF
Sbjct: 61  LAPDLLAVEENKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMVDAVAVVEGISMSSASF 120

Query: 121 KALIG 125
           KALIG
Sbjct: 121 KALIG 125

[Close]

BLAST of Csor.00g201520 vs. ExPASy TrEMBL
Match: A0A6J1GS97 (peptidyl-tRNA hydrolase, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456993 PE=3 SV=1)

HSP 1 Score: 232 bits (592), Expect = 8.60e-75
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60
           MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSS TASMSTSSP
Sbjct: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSFTASMSTSSP 60

Query: 61  LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASF 120
           LAPDLLA+EENKPAPPPKPWLIVGLGNPGKKYERTRH+V FEMVDAVAVVEGISMSSASF
Sbjct: 61  LAPDLLAVEENKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMVDAVAVVEGISMSSASF 120

Query: 121 KALIG 125
           KALIG
Sbjct: 121 KALIG 125

[Close]

BLAST of Csor.00g201520 vs. ExPASy TrEMBL
Match: A0A6J1JZW9 (peptidyl-tRNA hydrolase, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490352 PE=4 SV=1)

HSP 1 Score: 223 bits (567), Expect = 7.41e-73
Identity = 116/125 (92.80%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60
           MNIAASLSSLAALRLP+CLHCF TFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP
Sbjct: 1   MNIAASLSSLAALRLPICLHCFPTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60

Query: 61  LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASF 120
           LAPD LA+EE KPAPPPKPWLIVGLGNPGKKYERTRH+V FEM+DAVA VEGISMSSASF
Sbjct: 61  LAPDQLAVEEKKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSASF 120

Query: 121 KALIG 125
           KALIG
Sbjct: 121 KALIG 125

[Close]

BLAST of Csor.00g201520 vs. ExPASy TrEMBL
Match: A0A6J1K317 (peptidyl-tRNA hydrolase, chloroplastic isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111490211 PE=4 SV=1)

HSP 1 Score: 223 bits (567), Expect = 4.42e-72
Identity = 116/125 (92.80%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MNIAASLSSLAALRLPVCLHCFRTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60
           MNIAASLSSLAALRLP+CLHCF TFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP
Sbjct: 1   MNIAASLSSLAALRLPICLHCFPTFRTPISFPSLSLNPPSLHIFSSMTSSITASMSTSSP 60

Query: 61  LAPDLLALEENKPAPPPKPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASF 120
           LAPD LA+EE KPAPPPKPWLIVGLGNPGKKYERTRH+V FEM+DAVA VEGISMSSASF
Sbjct: 61  LAPDQLAVEEKKPAPPPKPWLIVGLGNPGKKYERTRHNVGFEMLDAVAEVEGISMSSASF 120

Query: 121 KALIG 125
           KALIG
Sbjct: 121 KALIG 125

[Close]

BLAST of Csor.00g201520 vs. TAIR 10
Match: AT1G18440.1 (Peptidyl-tRNA hydrolase family protein )

HSP 1 Score: 85.1 bits (209), Expect = 4.3e-17
Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 45  SSMTSSITASMSTSSPLAPDLLALEENKPAPPP--KPWLIVGLGNPGKKYERTRHSVRFE 104
           SS + S +++  +S P +  L AL  +KP  PP   PWLIVGLGNPGKKY+ TRH+V FE
Sbjct: 58  SSQSLSFSSNSFSSQPESELLQALPSSKPKSPPLQLPWLIVGLGNPGKKYQGTRHNVGFE 117

Query: 105 MVDAVAVVEGISMSSASFKALIG 126
           MVDA+A  EGISM++ +FKAL G
Sbjct: 118 MVDALADAEGISMNTVNFKALFG 140

[Close]

BLAST of Csor.00g201520 vs. TAIR 10
Match: AT5G16140.1 (Peptidyl-tRNA hydrolase family protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-11
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 79  PWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASFKALIG 126
           PWLIVGLGNPG KY  TRH+V FEM+D +A  EG+ M++   KALIG
Sbjct: 45  PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIG 91

[Close]

BLAST of Csor.00g201520 vs. TAIR 10
Match: AT5G16140.2 (Peptidyl-tRNA hydrolase family protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-11
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 79  PWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASFKALIG 126
           PWLIVGLGNPG KY  TRH+V FEM+D +A  EG+ M++   KALIG
Sbjct: 45  PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIG 91

[Close]

BLAST of Csor.00g201520 vs. TAIR 10
Match: AT5G19830.1 (Peptidyl-tRNA hydrolase family protein )

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-10
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 78  KPWLIVGLGNPGKKYERTRHSVRFEMVDAVAVVEGISMSSASFKALIG 126
           +PWL +GLGNPG KY+ TRH++ FEM+D  A   GI M+  +FKA++G
Sbjct: 17  RPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMG 64

[Close]

BLAST of Csor.00g201520 vs. TAIR 10
Match: AT5G38290.2 (Peptidyl-tRNA hydrolase family protein )

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-09
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 30  SFPSLSLNPPSLHIFSSMTSSIT--ASMSTSSPLAPDLLALEENKPAPPPKPWLIVGLGN 89
           S P  S   P  + FS   S+    +S+  S P++ + L   E        PWLIVGLGN
Sbjct: 10  SSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEY------TPWLIVGLGN 69

Query: 90  PGKKYERTRHSVRFEMVDAVAVVEGISMSSASFKALIG 126
           PG KY  TRH++ FEM+D +A    ISM++   KAL+G
Sbjct: 70  PGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVG 101

The following BLAST results are available for this feature:

BLAST of Csor.00g201520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW64	6.1e-16	56.63	Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g18...	[more]
Q5N9Q7	1.1e-12	66.67	Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q9LF14	2.9e-10	63.83	Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Ara...	[more]
Q5ZCL8	8.5e-10	61.70	Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza...	[more]
Q10LI6	1.5e-09	59.57	CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os0...	[more]

BLAST of Csor.00g201520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572895.1	3.55e-79	100.00	Peptidyl-tRNA hydrolase, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]
KAG6572896.1	1.19e-77	99.20	Peptidyl-tRNA hydrolase, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022955054.1	1.69e-77	98.40	peptidyl-tRNA hydrolase, chloroplastic-like isoform X1 [Cucurbita moschata]	[more]
XP_022954859.1	4.35e-75	96.80	peptidyl-tRNA hydrolase, chloroplastic-like isoform X2 [Cucurbita moschata] >XP_...	[more]
KAG6572934.1	1.25e-74	97.60	Peptidyl-tRNA hydrolase, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]

BLAST of Csor.00g201520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GUU4	8.18e-78	98.40	peptidyl-tRNA hydrolase, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1GTK7	2.11e-75	96.80	peptidyl-tRNA hydrolase, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1GS97	8.60e-75	96.80	peptidyl-tRNA hydrolase, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1JZW9	7.41e-73	92.80	peptidyl-tRNA hydrolase, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=36...	[more]
A0A6J1K317	4.42e-72	92.80	peptidyl-tRNA hydrolase, chloroplastic isoform X3 OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of Csor.00g201520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18440.1	4.3e-17	56.63	Peptidyl-tRNA hydrolase family protein	[more]
AT5G16140.1	2.1e-11	63.83	Peptidyl-tRNA hydrolase family protein	[more]
AT5G16140.2	2.1e-11	63.83	Peptidyl-tRNA hydrolase family protein	[more]
AT5G19830.1	2.3e-10	54.17	Peptidyl-tRNA hydrolase family protein	[more]
AT5G38290.2	3.3e-09	40.82	Peptidyl-tRNA hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001328	Peptidyl-tRNA hydrolase	PFAM	PF01195	Pept_tRNA_hydro	coord: 81..122 e-value: 3.6E-10 score: 39.9
IPR001328	Peptidyl-tRNA hydrolase	PANTHER	PTHR17224	PEPTIDYL-TRNA HYDROLASE	coord: 69..124
IPR036416	Peptidyl-tRNA hydrolase superfamily	GENE3D	3.40.50.1470		coord: 68..125 e-value: 2.7E-13 score: 51.7
IPR036416	Peptidyl-tRNA hydrolase superfamily	SUPERFAMILY	53178	Peptidyl-tRNA hydrolase-like	coord: 79..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g201520.m01	Csor.00g201520.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004045	aminoacyl-tRNA hydrolase activity