Csor.00g201440 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g201440
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr14: 9757383 .. 9757835 (+)
RNA-Seq ExpressionCsor.00g201440
SyntenyCsor.00g201440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCAGCAGCCATTGTCAGCCACAGAGGACTCCACACAACAACAAGTACCCAACACCCCTCCTCCTACTACTCTCACTTTCTTGGTGCACATATGA

mRNA sequence

ATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCAGCAGCCATTGTCAGCCACAGAGGACTCCACACAACAACAAGTACCCAACACCCCTCCTCCTACTACTCTCACTTTCTTGGTGCACATATGA

Coding sequence (CDS)

ATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGAGGAGATGCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCTTCTTAGAGTGCAGGGAGTGTGGGAGGAGATGCAGCAGCCATTGTCAGCCACAGAGGACTCCACACAACAACAAGTACCCAACACCCCTCCTCCTACTACTCTCACTTTCTTGGTGCACATATGA

Protein sequence

MLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQGVWEEMQQPLSATEDSTQQQVPNTPPPTTLTFLVHI
Homology
[Close]
BLAST of Csor.00g201440 vs. NCBI nr
Match: KAG6581685.1 (hypothetical protein SDJN03_21687, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 272 bits (695), Expect = 1.75e-91
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQ 60
           MLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQ
Sbjct: 1   MLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQ 60

Query: 61  EEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQGVWEEM 120
           EEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQGVWEEM
Sbjct: 61  EEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQGVWEEM 120

Query: 121 QQPLSATEDSTQQQVPNTPPPTTLTFLVHI 150
           QQPLSATEDSTQQQVPNTPPPTTLTFLVHI
Sbjct: 121 QQPLSATEDSTQQQVPNTPPPTTLTFLVHI 150

[Close]
BLAST of Csor.00g201440 vs. NCBI nr
Match: MBK9248679.1 (hypothetical protein [Ignavibacteria bacterium])

HSP 1 Score: 53.9 bits (128), Expect = 4.94e-05
Identity = 50/123 (40.65%), Postives = 65/123 (52.85%), Query Frame = 0 

Query: 8   EMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQ 67
           E+ R Q   EE+ L + EE LR Q   EE +L + EE LR Q   EE +L + EE LR Q
Sbjct: 406 EIARAQAAEEEIALALYEEQLRAQAAEEEAVLALYEEQLRAQAAEEEAVLALYEEQLRAQ 465

Query: 68  GVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQGVWEEMQQPLSAT 127
              E ++L + EE LR Q   E  +L + EE LR Q   E  +L    ++EE Q    A 
Sbjct: 466 AAEEAVVLALYEEQLRAQAAEEAAVLALYEEQLRAQAAEEAAVL---ALYEE-QLRAQAA 524

Query: 128 EDS 130
           EDS
Sbjct: 526 EDS 524

[Close]
BLAST of Csor.00g201440 vs. NCBI nr
Match: RXM96410.1 (hypothetical protein EOD39_15722 [Acipenser ruthenus])

HSP 1 Score: 49.7 bits (117), Expect = 2.20e-04
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 0 

Query: 40  RVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEM 99
           R+ EEML + G+WEEMLL        + G+WEEMLL        + G+WEEMLL      
Sbjct: 53  RLWEEMLLLSGLWEEMLL--------LSGLWEEMLL--------LSGLWEEMLL------ 106

Query: 100 LRVQGVWEEMLLRVQGVWE 118
             + G+WEEMLL + G+WE
Sbjct: 113 --LSGLWEEMLL-LSGLWE 106

[Close]
BLAST of Csor.00g201440 vs. ExPASy TrEMBL
Match: A0A444V7T5 (Uncharacterized protein OS=Acipenser ruthenus OX=7906 GN=EOD39_15722 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.06e-04
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 0 

Query: 40  RVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEMLRVQGVWEEMLLRVQEEM 99
           R+ EEML + G+WEEMLL        + G+WEEMLL        + G+WEEMLL      
Sbjct: 53  RLWEEMLLLSGLWEEMLL--------LSGLWEEMLL--------LSGLWEEMLL------ 106

Query: 100 LRVQGVWEEMLLRVQGVWE 118
             + G+WEEMLL + G+WE
Sbjct: 113 --LSGLWEEMLL-LSGLWE 106

The following BLAST results are available for this feature:
BLAST of Csor.00g201440 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g201440 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6581685.11.75e-91100.00hypothetical protein SDJN03_21687, partial [Cucurbita argyrosperma subsp. sorori... [more]
MBK9248679.14.94e-0540.65hypothetical protein [Ignavibacteria bacterium][more]
RXM96410.12.20e-0445.57hypothetical protein EOD39_15722 [Acipenser ruthenus][more]
BLAST of Csor.00g201440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A444V7T51.06e-0445.57Uncharacterized protein OS=Acipenser ruthenus OX=7906 GN=EOD39_15722 PE=4 SV=1[more]
BLAST of Csor.00g201440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g201440.m01Csor.00g201440.m01mRNA