Csor.00g201390 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g201390
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionpolyamine-modulated factor 1-binding protein 1
LocationCsor_Chr14: 9873703 .. 9874017 (-)
RNA-Seq ExpressionCsor.00g201390
SyntenyCsor.00g201390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAATGGGAGATAGGATTTGTAGGTTAGTTGAGAGTGAGAGAGTGAAGAATGTGGAGATTGTGAGATTGAAAGATGAGAATAATGGGCTTGTTTTGAAAGTTGAGGAAGAGAGGGAGAAATGGATGATGGTTTGTTGTAAGAGGGATGGAATTAAGGCTGATTTTGATGGATGGTTTGAGGAATCAGGGGATTTGAGAAGAAAAATGGATGAAAGGAGAAGAATGAGAAAAGGGCTTTGGAAGAGATGGAGGATTTGGAGGCGAAAGGCAAGAAGTTGTCTTGTGAAAAGATGGAAAGTGAGATTATGA

mRNA sequence

ATGGATGAAATGGGAGATAGGATTTGTAGGTTAGTTGAGAGTGAGAGAGTGAAGAATGTGGAGATTGTGAGATTGAAAGATGAGAATAATGGGCTTGTTTTGAAAGTTGAGGAAGAGAGGGAGAAATGGATGATGGTTTGTTGTAAGAGGGATGGAATTAAGGCTGATTTTGATGGATGGTTTGAGGAATCAGGGGATTTGAGAAGAAAAATGGATGAAAGGAGAAGAATGAGAAAAGGGCTTTGGAAGAGATGGAGGATTTGGAGGCGAAAGGCAAGAAGTTGTCTTGTGAAAAGATGGAAAGTGAGATTATGA

Coding sequence (CDS)

ATGGATGAAATGGGAGATAGGATTTGTAGGTTAGTTGAGAGTGAGAGAGTGAAGAATGTGGAGATTGTGAGATTGAAAGATGAGAATAATGGGCTTGTTTTGAAAGTTGAGGAAGAGAGGGAGAAATGGATGATGGTTTGTTGTAAGAGGGATGGAATTAAGGCTGATTTTGATGGATGGTTTGAGGAATCAGGGGATTTGAGAAGAAAAATGGATGAAAGGAGAAGAATGAGAAAAGGGCTTTGGAAGAGATGGAGGATTTGGAGGCGAAAGGCAAGAAGTTGTCTTGTGAAAAGATGGAAAGTGAGATTATGA

Protein sequence

MDEMGDRICRLVESERVKNVEIVRLKDENNGLVLKVEEEREKWMMVCCKRDGIKADFDGWFEESGDLRRKMDERRRMRKGLWKRWRIWRRKARSCLVKRWKVRL
Homology
BLAST of Csor.00g201390 vs. NCBI nr
Match: KAG6581690.1 (hypothetical protein SDJN03_21692, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 214 bits (546), Expect = 3.07e-70
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MDEMGDRICRLVESERVKNVEIVRLKDENNGLVLKVEEEREKWMMVCCKRDGIKADFDGW 60
           MDEMGDRICRLVESERVKNVEIVRLKDENNGLVLKVEEEREKWMMVCCKRDGIKADFDGW
Sbjct: 1   MDEMGDRICRLVESERVKNVEIVRLKDENNGLVLKVEEEREKWMMVCCKRDGIKADFDGW 60

Query: 61  FEESGDLRRKMDERRRMRKGLWKRWRIWRRKARSCLVKRWKVRL 104
           FEESGDLRRKMDERRRMRKGLWKRWRIWRRKARSCLVKRWKVRL
Sbjct: 61  FEESGDLRRKMDERRRMRKGLWKRWRIWRRKARSCLVKRWKVRL 104

BLAST of Csor.00g201390 vs. NCBI nr
Match: KAG6581691.1 (hypothetical protein SDJN03_21693, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169 bits (429), Expect = 1.36e-52
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0

Query: 1  MDEMGDRICRLVESERVKNVEIVRLKDENNGLVLKVEEEREKWMMVCCKRDGIKADFDGW 60
          MDE+GDRICRLVE+E+VKNVEIVR KDENNGLVLKVEEEREKW  VC KRDGIKADFDGW
Sbjct: 1  MDEVGDRICRLVENEKVKNVEIVRSKDENNGLVLKVEEEREKWTKVCRKRDGIKADFDGW 60

Query: 61 FEESGDLRRKMDERRRMRKGLWKRWRIWR 89
          FEESGDLRRKMDERRR+RKGLWKRWRIWR
Sbjct: 61 FEESGDLRRKMDERRRIRKGLWKRWRIWR 89

BLAST of Csor.00g201390 vs. NCBI nr
Match: XP_023514497.1 (uncharacterized protein LOC111778756 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176 bits (445), Expect = 4.47e-52
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0

Query: 1   MDEMGDRICRLVESERVKNVEIVRLKDENNGLVLKVEEEREKWMMVCCKRDGIKADFDGW 60
           MDEMGDRICRLV SERVKNVEIVRLKDENNGLVLKVEEEREKWM VCCKRDGIKADFDGW
Sbjct: 103 MDEMGDRICRLVGSERVKNVEIVRLKDENNGLVLKVEEEREKWMKVCCKRDGIKADFDGW 162

Query: 61  FEESGDLRRKMDERRRMRKGLWKRWRIWR 89
            EE GDLRRKMDERRRMRKGLWKRW+IWR
Sbjct: 163 LEELGDLRRKMDERRRMRKGLWKRWKIWR 191

BLAST of Csor.00g201390 vs. NCBI nr
Match: KAG6581692.1 (hypothetical protein SDJN03_21694, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145 bits (367), Expect = 7.34e-43
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 0

Query: 1   MDEMGDRICRLVESERVKNVEIVRLKDENNGLVLKVEEEREKWMMVCCKRDGIKADFDGW 60
           MDE+GDRICRLVESERVKNVE  RLKDENNGLVLKVE ERE+WM VCC+RDGIKADFDGW
Sbjct: 29  MDEVGDRICRLVESERVKNVENGRLKDENNGLVLKVEGEREEWMKVCCERDGIKADFDGW 88

Query: 61  FEESGDLRRKMDERRRMRKG 80
           FEESGDLRRKM +RRRM+KG
Sbjct: 89  FEESGDLRRKMTKRRRMQKG 108

BLAST of Csor.00g201390 vs. NCBI nr
Match: KAG6586283.1 (hypothetical protein SDJN03_19016, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128 bits (322), Expect = 5.98e-34
Identity = 63/73 (86.30%), Postives = 66/73 (90.41%), Query Frame = 0

Query: 1   MDEMGDRICRLVESERVKNVEIVRLKDENNGLVLKVEEEREKWMMVCCKRDGIKADFDGW 60
           M+EMG  ICRLVESERVKNVEI RLK ENNGLVLKVEEEREKWM VCC+RDGIKADFDG 
Sbjct: 29  MEEMGGVICRLVESERVKNVEIGRLKGENNGLVLKVEEEREKWMKVCCERDGIKADFDGL 88

Query: 61  FEESGDLRRKMDE 73
           FEE+GDLRRKM E
Sbjct: 89  FEETGDLRRKMVE 101

BLAST of Csor.00g201390 vs. ExPASy TrEMBL
Match: A0A6J1FD80 (polyamine-modulated factor 1-binding protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111444320 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 2.15e-32
Identity = 63/73 (86.30%), Postives = 66/73 (90.41%), Query Frame = 0

Query: 1   MDEMGDRICRLVESERVKNVEIVRLKDENNGLVLKVEEEREKWMMVCCKRDGIKADFDGW 60
           M+EMG  ICRLVESERVKNVEI RLK ENNGLVLKVEEEREKWM VCC+RDGIKADFDG 
Sbjct: 118 MEEMGGVICRLVESERVKNVEIGRLKGENNGLVLKVEEEREKWMKVCCERDGIKADFDGL 177

Query: 61  FEESGDLRRKMDE 73
           FEE+GDLRRKM E
Sbjct: 178 FEETGDLRRKMVE 190

BLAST of Csor.00g201390 vs. ExPASy TrEMBL
Match: A0A6J1I2X9 (protein MNN4-like OS=Cucurbita maxima OX=3661 GN=LOC111470470 PE=4 SV=1)

HSP 1 Score: 117 bits (293), Expect = 2.01e-30
Identity = 59/74 (79.73%), Postives = 66/74 (89.19%), Query Frame = 0

Query: 1   MDEMGDRICRLVESERVKNVEIVRLKDENNGLVLKVEEEREKWMMVCCKRDGIKADFDG- 60
           M+E+GDRICRLVESER+KNVEI RLKD+NNGLVLKVEEEREKWM VCC+RDGIKA+ D  
Sbjct: 98  MNEVGDRICRLVESERLKNVEIERLKDKNNGLVLKVEEEREKWMKVCCERDGIKANSDDE 157

Query: 61  WFEESGDLRRKMDE 73
            FEES DLR+KM E
Sbjct: 158 LFEESRDLRKKMIE 171

BLAST of Csor.00g201390 vs. ExPASy TrEMBL
Match: A0A6J1HKX2 (polyamine-modulated factor 1-binding protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111465485 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 1.27e-29
Identity = 60/73 (82.19%), Postives = 63/73 (86.30%), Query Frame = 0

Query: 1   MDEMGDRICRLVESERVKNVEIVRLKDENNGLVLKVEEEREKWMMVCCKRDGIKADFDGW 60
           M+EMG  ICRLVESER KNVEI RLK ENNGLVLK EEEREKWM VC +RDGIKADFDG 
Sbjct: 117 MEEMGGVICRLVESEREKNVEIGRLKGENNGLVLKAEEEREKWMKVCSERDGIKADFDGL 176

Query: 61  FEESGDLRRKMDE 73
           FEE+GDLRRKM E
Sbjct: 177 FEETGDLRRKMVE 189

BLAST of Csor.00g201390 vs. ExPASy TrEMBL
Match: A0A6J1I9J8 (uncharacterized protein LOC111470467 OS=Cucurbita maxima OX=3661 GN=LOC111470467 PE=4 SV=1)

HSP 1 Score: 112 bits (280), Expect = 1.52e-28
Identity = 54/73 (73.97%), Postives = 64/73 (87.67%), Query Frame = 0

Query: 1  MDEMGDRICRLVESERVKNVEIVRLKDENNGLVLKVEEEREKWMMVCCKRDGIKADFDGW 60
          MDE+GDRICRLVESER+KNV+I RLKDENNGLVLKVEEEREKW+ VC +RD I+ ++DG 
Sbjct: 16 MDEVGDRICRLVESERLKNVDIGRLKDENNGLVLKVEEEREKWLKVCWERDEIEDNYDGL 75

Query: 61 FEESGDLRRKMDE 73
          F+E  DLR+KM E
Sbjct: 76 FKEIRDLRKKMIE 88

BLAST of Csor.00g201390 vs. ExPASy TrEMBL
Match: A0A5D3D489 (Cingulin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00730 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.98e-18
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 0

Query: 1   MDEMGDRICRLVESERVKNVEIVRLKDENNGLVLKVEEEREKWMMVCCKRDGIKADFDGW 60
           ++EM   I  L+ESERVK +EI  LK E NGLVL+VEEEREKW  VCC+RD IK +FDG 
Sbjct: 113 IEEMSGGIFGLLESERVKGLEIRNLKAEINGLVLEVEEEREKWRGVCCERDEIKVEFDGL 172

Query: 61  FEESGDLRRKMDERRR 76
            +E+GDLR K+ E  R
Sbjct: 173 LKETGDLRGKVVEMER 188

BLAST of Csor.00g201390 vs. TAIR 10
Match: AT5G27330.1 (Prefoldin chaperone subunit family protein )

HSP 1 Score: 47.4 bits (111), Expect = 8.3e-06
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 0

Query: 3   EMGDRICRLVESERVKNVEIVRLKDENNGLVLKVEEEREKWMMVCCKRDGIKADFDGWFE 62
           EMG  +  L + +  +  EI  LK E NGL+ K+E ERE++  VC +RD +K+ FD   E
Sbjct: 127 EMGVEVDWLFKEKSDRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVKSGFDLQSE 186

Query: 63  ESGDLRRKM 72
           E   L+  +
Sbjct: 187 EMNLLKESV 195

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6581690.13.07e-70100.00hypothetical protein SDJN03_21692, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6581691.11.36e-5291.01hypothetical protein SDJN03_21693, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023514497.14.47e-5294.38uncharacterized protein LOC111778756 [Cucurbita pepo subsp. pepo][more]
KAG6581692.17.34e-4387.50hypothetical protein SDJN03_21694, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6586283.15.98e-3486.30hypothetical protein SDJN03_19016, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6J1FD802.15e-3286.30polyamine-modulated factor 1-binding protein 1 OS=Cucurbita moschata OX=3662 GN=... [more]
A0A6J1I2X92.01e-3079.73protein MNN4-like OS=Cucurbita maxima OX=3661 GN=LOC111470470 PE=4 SV=1[more]
A0A6J1HKX21.27e-2982.19polyamine-modulated factor 1-binding protein 1 OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A6J1I9J81.52e-2873.97uncharacterized protein LOC111470467 OS=Cucurbita maxima OX=3661 GN=LOC111470467... [more]
A0A5D3D4891.98e-1860.53Cingulin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00730 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT5G27330.18.3e-0639.13Prefoldin chaperone subunit family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 22..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g201390.m01Csor.00g201390.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane