Csor.00g200350 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g200350
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr03: 5007630 .. 5009436 (+)
RNA-Seq ExpressionCsor.00g200350
SyntenyCsor.00g200350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCGCGACTGAGCCCTTCTCCCGGCCTCTCTCACGAAAGCGGTCTCCCGTTAAAAATCTCCTGATTTCCACTCTCCAGAGACGAGCCAAATTGATTTCGGACTTCAGAGTTTCGCTCCACGTTAATCTGATCAGAATCCGGTGCATAACGGAGTGCCTCATTTTCTGGATCTGTCGTTTTTCAGACTTTAGAGGTTTGCTTCATCTTCTAATGAGCTTCTTTTTTGTTCTGATCAGAATCTGATGGCTTGTTCTTACTCGCACACACATATATATAGTAGTTTGGATGAATAGGAGAGAAGAGGATTGGAAGATCTGGAATAATGAACTCATTGAATGTTATTGACTTCACGGTGGTTTCAATGTGTTCATTATTCCAGAGATTGCTTCTTTGATTGTATTGCTTACTAACCATCTCATTTATGAATGTTTGATTCTGAATGTTTCCTAAGCTTCAAAACCATTTGCTATATTGTATTTAGAGACCCTATTTTTTCCATTAGAGTTTTCATTTCTTGAGATGACTAATGAGATTCATTTAATTGCAAACATCATAAAGTTTGCAGATATAATTCCACTTGAAATTGCATCTCTCGCAAATAAACTAAGTTAACAATGATCAGTGTAAAACAAGAAACCGTTCAAGGATGCCTCTAACCTCGGGAGAAAAAGGTCTTTCGATTTTGTCTGTTCAAGATCTCCCGTTAGCTCACATATATGGTCCTCTTTGAGCTTTCCTTCTAGACTCTCCCTCAAGATTTTTAAAACGCATCAGCTAGTGAAAGGTTTCACACCCTTATAAAGAGTGCTTCGTTCCTCTCCTAACCGATGTGGGATCTACAGACGCGTTTTAAAAAAAAAAACTCTCTCTAGCAGATTCGTTTTAAAAACCTTAAGGGGAAGCAAGCTTGGAAAGAAAAACTTAAAAGGGCAATATCTACTAATAGTGGACTTGACGTGTTACAACAGATCTTTTTAGTGGCGTTAGATAAAAGGTTTTACTCTGTGGATGAAGGAGGCTATGGATATGGACTGGAATGATGGTTAGAAATGAAGCCTCTTAGTTTTGAATTAGTTTCTGGTTCCTATGTCAAGTGTCTGCGGTAACTTTTATGAGGAGAGTATCCTATCCTATCCTTCTTCCTTTTTGTTGACTTCGTTAATTAATAGAAAGCTTCTTATAGATTTTTGGTTCTAGTCTCGCAGTGTTCCTGTAACGGCCCAAGCCCACCGCTAGTAGATATTGTCCTTTTTGGGCTTTTTCTTTCGGGCTTCCCCTCAAAAATTTTTAAAACTCGTCTGCTAGGGAAAGGTTCCACACCCTTATAAGAGATGTTTCGTCTCACAGTTTCCGTTGGACTCAATTGCAATACTACTCTGTTTCATGTCCCTAACTTCACTTATCTATCTGTTTTGATCTACAGACACTTCATTCTTGCTAGTGCTATTGAAGGCATGGAATGATTGTATCAAAGATGGCGTTCGCACGGTCGGCTCACCGATACCAAGTAATCTACATCTTCCTTTCAGCTGCTGATTTAGTTCATTGACACCCTTTTTCCTGAAGAGTTCTATCAGCTGGTTTAGGTCTGCTTGTGGAATCACAATCACAAATAGGATTTTGATATGTAGTTTAAAGACTGATTTTTGTTTCATCAATCAGTAATGATGCACCCAGTAGCAAAAACTTCAGTCCTTGCATGTTTAACAACCGACTACTATACCGACATCAGTAACTCGGTATGTATCGACTTTAGCTGTTGTCTTGCATCCATTTTCATGCAGGAAAAGGCTGGAATCTTTAA

mRNA sequence

ATGCGCGCGACTGAGCCCTTCTCCCGGCCTCTCTCACGAAAGCGGTCTCCCGTTAAAAATCTCCTGATTTCCACTCTCCAGAGACGAGCCAAATTGATTTCGGACTTCAGAGTTTCGCTCCACGTTAATCTGATCAGAATCCGGTGCATAACGGAGTGCCTCATTTTCTGGATCTGTCGTTTTTCAGACTTTAGAGACACTTCATTCTTGCTAGTGCTATTGAAGGCATGGAATGATTGTATCAAAGATGGCGTTCGCACGGTCGGCTCACCGATACCAAGAAAAGGCTGGAATCTTTAA

Coding sequence (CDS)

ATGCGCGCGACTGAGCCCTTCTCCCGGCCTCTCTCACGAAAGCGGTCTCCCGTTAAAAATCTCCTGATTTCCACTCTCCAGAGACGAGCCAAATTGATTTCGGACTTCAGAGTTTCGCTCCACGTTAATCTGATCAGAATCCGGTGCATAACGGAGTGCCTCATTTTCTGGATCTGTCGTTTTTCAGACTTTAGAGACACTTCATTCTTGCTAGTGCTATTGAAGGCATGGAATGATTGTATCAAAGATGGCGTTCGCACGGTCGGCTCACCGATACCAAGAAAAGGCTGGAATCTTTAA

Protein sequence

MRATEPFSRPLSRKRSPVKNLLISTLQRRAKLISDFRVSLHVNLIRIRCITECLIFWICRFSDFRDTSFLLVLLKAWNDCIKDGVRTVGSPIPRKGWNL
Homology
[Close]
BLAST of Csor.00g200350 vs. NCBI nr
Match: KAG6603660.1 (hypothetical protein SDJN03_04269, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201 bits (511), Expect = 4.66e-65
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MRATEPFSRPLSRKRSPVKNLLISTLQRRAKLISDFRVSLHVNLIRIRCITECLIFWICR 60
          MRATEPFSRPLSRKRSPVKNLLISTLQRRAKLISDFRVSLHVNLIRIRCITECLIFWICR
Sbjct: 1  MRATEPFSRPLSRKRSPVKNLLISTLQRRAKLISDFRVSLHVNLIRIRCITECLIFWICR 60

Query: 61 FSDFRDTSFLLVLLKAWNDCIKDGVRTVGSPIPRKGWNL 99
          FSDFRDTSFLLVLLKAWNDCIKDGVRTVGSPIPRKGWNL
Sbjct: 61 FSDFRDTSFLLVLLKAWNDCIKDGVRTVGSPIPRKGWNL 99

[Close]
BLAST of Csor.00g200350 vs. NCBI nr
Match: XP_022949911.1 (uncharacterized protein LOC111453166 [Cucurbita moschata])

HSP 1 Score: 172 bits (437), Expect = 6.45e-53
Identity = 88/93 (94.62%), Postives = 88/93 (94.62%), Query Frame = 0 

Query: 1  MRATEPFSRPLSRKRSPVKNLLISTLQRRAKLISDFRVSLHVNLIRIRCITECLIFWICR 60
          MRA EPFSRPLSRKRSPVKNLLISTLQRRAKLISDFR SLHVNLIRIRCITECLIFWI R
Sbjct: 1  MRAIEPFSRPLSRKRSPVKNLLISTLQRRAKLISDFRASLHVNLIRIRCITECLIFWIRR 60

Query: 61 FSDFRDTSFLLVLLKAWNDCIKDGVRTVGSPIP 93
           SDFRDTSFLLV LKAWNDCIKDGVRTVGSPIP
Sbjct: 61 VSDFRDTSFLLVPLKAWNDCIKDGVRTVGSPIP 93

[Close]
BLAST of Csor.00g200350 vs. ExPASy TrEMBL
Match: A0A6J1GDD0 (uncharacterized protein LOC111453166 OS=Cucurbita moschata OX=3662 GN=LOC111453166 PE=4 SV=1)

HSP 1 Score: 172 bits (437), Expect = 3.12e-53
Identity = 88/93 (94.62%), Postives = 88/93 (94.62%), Query Frame = 0 

Query: 1  MRATEPFSRPLSRKRSPVKNLLISTLQRRAKLISDFRVSLHVNLIRIRCITECLIFWICR 60
          MRA EPFSRPLSRKRSPVKNLLISTLQRRAKLISDFR SLHVNLIRIRCITECLIFWI R
Sbjct: 1  MRAIEPFSRPLSRKRSPVKNLLISTLQRRAKLISDFRASLHVNLIRIRCITECLIFWIRR 60

Query: 61 FSDFRDTSFLLVLLKAWNDCIKDGVRTVGSPIP 93
           SDFRDTSFLLV LKAWNDCIKDGVRTVGSPIP
Sbjct: 61 VSDFRDTSFLLVPLKAWNDCIKDGVRTVGSPIP 93

The following BLAST results are available for this feature:
BLAST of Csor.00g200350 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g200350 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6603660.14.66e-65100.00hypothetical protein SDJN03_04269, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022949911.16.45e-5394.62uncharacterized protein LOC111453166 [Cucurbita moschata][more]
BLAST of Csor.00g200350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GDD03.12e-5394.62uncharacterized protein LOC111453166 OS=Cucurbita moschata OX=3662 GN=LOC1114531... [more]
BLAST of Csor.00g200350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g200350.m01Csor.00g200350.m01mRNA