Csor.00g199660 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g199660
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Clathrin light chain
Location	Csor_Chr03: 4663800 .. 4664051 (+)
RNA-Seq Expression	Csor.00g199660
Synteny	Csor.00g199660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGCTCCAGCGGATTCGAACGTCGCCTTTGTCTCAATGATTCGAATCCTTTTCTACCTTCGAAGACGAGTCTGCCGTCGCCGACTCGTCATCGATCTTCGTCAACCAGCCGTTAACCAGGGAGACGACCTGCTGCTGACTTCGCCTTCGAATTTCTCGGCCGATGGGGGAATCTCTAGTTTCTCACCGGAGCAGAACGGGAAGGGCTTTGATGGAGATTTTGGCGAATCGGATGGCCCGATCCTCTAA

mRNA sequence

ATGACGGCTCCAGCGGATTCGAACGTCGCCTTTGTCTCAATGATTCGAATCCTTTTCTACCTTCGAAGACGAGTCTGCCGTCGCCGACTCGTCATCGATCTTCGTCAACCAGCCGTTAACCAGGGAGACGACCTGCTGCTGACTTCGCCTTCGAATTTCTCGGCCGATGGGGGAATCTCTAGTTTCTCACCGGAGCAGAACGGGAAGGGCTTTGATGGAGATTTTGGCGAATCGGATGGCCCGATCCTCTAA

Coding sequence (CDS)

ATGACGGCTCCAGCGGATTCGAACGTCGCCTTTGTCTCAATGATTCGAATCCTTTTCTACCTTCGAAGACGAGTCTGCCGTCGCCGACTCGTCATCGATCTTCGTCAACCAGCCGTTAACCAGGGAGACGACCTGCTGCTGACTTCGCCTTCGAATTTCTCGGCCGATGGGGGAATCTCTAGTTTCTCACCGGAGCAGAACGGGAAGGGCTTTGATGGAGATTTTGGCGAATCGGATGGCCCGATCCTCTAA

Protein sequence

MTAPADSNVAFVSMIRILFYLRRRVCRRRLVIDLRQPAVNQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL

Homology

[Close]

BLAST of Csor.00g199660 vs. NCBI nr
Match: KAG6603591.1 (hypothetical protein SDJN03_04200, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163 bits (413), Expect = 1.32e-50
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MTAPADSNVAFVSMIRILFYLRRRVCRRRLVIDLRQPAVNQGDDLLLTSPSNFSADGGIS 60
          MTAPADSNVAFVSMIRILFYLRRRVCRRRLVIDLRQPAVNQGDDLLLTSPSNFSADGGIS
Sbjct: 1  MTAPADSNVAFVSMIRILFYLRRRVCRRRLVIDLRQPAVNQGDDLLLTSPSNFSADGGIS 60

Query: 61 SFSPEQNGKGFDGDFGESDGPIL 83
          SFSPEQNGKGFDGDFGESDGPIL
Sbjct: 61 SFSPEQNGKGFDGDFGESDGPIL 83

[Close]

BLAST of Csor.00g199660 vs. NCBI nr
Match: XP_038882671.1 (clathrin light chain 2-like [Benincasa hispida] >XP_038882672.1 clathrin light chain 2-like [Benincasa hispida])

HSP 1 Score: 77.4 bits (189), Expect = 1.21e-14
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 38 AVNQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL 83
          A NQGDDL  T P+NFSADGG SSFSP+QNGKGFDG +GESDGPIL
Sbjct: 54 AYNQGDDLSPTPPTNFSADGGFSSFSPQQNGKGFDGGYGESDGPIL 99

[Close]

BLAST of Csor.00g199660 vs. NCBI nr
Match: XP_023517245.1 (clathrin light chain 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.6 bits (166), Expect = 2.13e-11
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 40 NQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL 83
          NQGDD+  T P+NFSADGG+SS SPEQN +GFDG FGESD PIL
Sbjct: 55 NQGDDVPPTPPTNFSADGGLSSLSPEQNSEGFDGGFGESDRPIL 98

[Close]

BLAST of Csor.00g199660 vs. NCBI nr
Match: KAG7027391.1 (Clathrin light chain 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.9 bits (159), Expect = 1.53e-10
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 40  NQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL 83
           NQGDD+  T P+NFSA GG+SS SPEQN +GFDG FGESD PIL
Sbjct: 57  NQGDDVPPTPPTNFSAGGGLSSLSPEQNSEGFDGGFGESDRPIL 100

[Close]

BLAST of Csor.00g199660 vs. NCBI nr
Match: XP_008449287.1 (PREDICTED: clathrin light chain 2-like [Cucumis melo] >KAA0045034.1 clathrin light chain 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.53e-10
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 42 GDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL 83
          GDDL  T P+NFSA GG SSFS +QNGKGFDG FGESDGPIL
Sbjct: 54 GDDLPPTPPTNFSAVGGFSSFSSQQNGKGFDGGFGESDGPIL 95

[Close]

BLAST of Csor.00g199660 vs. ExPASy TrEMBL
Match: A0A5A7TPG9 (Clathrin light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G00190 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.42e-11
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 42 GDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL 83
          GDDL  T P+NFSA GG SSFS +QNGKGFDG FGESDGPIL
Sbjct: 54 GDDLPPTPPTNFSAVGGFSSFSSQQNGKGFDGGFGESDGPIL 95

[Close]

BLAST of Csor.00g199660 vs. ExPASy TrEMBL
Match: A0A5D3B8W6 (Clathrin light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00900 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.42e-11
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 42 GDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL 83
          GDDL  T P+NFSA GG SSFS +QNGKGFDG FGESDGPIL
Sbjct: 54 GDDLPPTPPTNFSAVGGFSSFSSQQNGKGFDGGFGESDGPIL 95

[Close]

BLAST of Csor.00g199660 vs. ExPASy TrEMBL
Match: A0A1S3BLP9 (Clathrin light chain OS=Cucumis melo OX=3656 GN=LOC103491206 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.42e-11
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 42 GDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL 83
          GDDL  T P+NFSA GG SSFS +QNGKGFDG FGESDGPIL
Sbjct: 54 GDDLPPTPPTNFSAVGGFSSFSSQQNGKGFDGGFGESDGPIL 95

[Close]

BLAST of Csor.00g199660 vs. ExPASy TrEMBL
Match: A0A6J1EVB3 (Clathrin light chain OS=Cucurbita moschata OX=3662 GN=LOC111438236 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.02e-10
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 40 NQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL 83
          NQGDD+  T P+NFSA GG+SS SPEQN +GFDG FGESD PIL
Sbjct: 56 NQGDDVPPTPPTNFSAGGGLSSLSPEQNSEGFDGGFGESDRPIL 99

[Close]

BLAST of Csor.00g199660 vs. ExPASy TrEMBL
Match: A0A0A0KZX1 (Clathrin light chain OS=Cucumis sativus OX=3659 GN=Csa_4G308590 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.42e-10
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 40 NQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL 83
          +QGD +  T P+NFSA GG SSFS +QNGKGFDG FGESDGPIL
Sbjct: 52 DQGDGVEPTPPTNFSAGGGFSSFSSQQNGKGFDGGFGESDGPIL 95

The following BLAST results are available for this feature:

BLAST of Csor.00g199660 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g199660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603591.1	1.32e-50	100.00	hypothetical protein SDJN03_04200, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038882671.1	1.21e-14	80.43	clathrin light chain 2-like [Benincasa hispida] >XP_038882672.1 clathrin light c...	[more]
XP_023517245.1	2.13e-11	75.00	clathrin light chain 2-like [Cucurbita pepo subsp. pepo]	[more]
KAG7027391.1	1.53e-10	72.73	Clathrin light chain 2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008449287.1	1.53e-10	78.57	PREDICTED: clathrin light chain 2-like [Cucumis melo] >KAA0045034.1 clathrin lig...	[more]

BLAST of Csor.00g199660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TPG9	7.42e-11	78.57	Clathrin light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G...	[more]
A0A5D3B8W6	7.42e-11	78.57	Clathrin light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold782...	[more]
A0A1S3BLP9	7.42e-11	78.57	Clathrin light chain OS=Cucumis melo OX=3656 GN=LOC103491206 PE=3 SV=1	[more]
A0A6J1EVB3	1.02e-10	72.73	Clathrin light chain OS=Cucurbita moschata OX=3662 GN=LOC111438236 PE=3 SV=1	[more]
A0A0A0KZX1	1.42e-10	72.73	Clathrin light chain OS=Cucumis sativus OX=3659 GN=Csa_4G308590 PE=3 SV=1	[more]

BLAST of Csor.00g199660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g199660.m01	Csor.00g199660.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048268	clathrin coat assembly
biological_process	GO:0072583	clathrin-dependent endocytosis
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0030132	clathrin coat of coated pit
cellular_component	GO:0030130	clathrin coat of trans-Golgi network vesicle
molecular_function	GO:0032050	clathrin heavy chain binding
molecular_function	GO:0005198	structural molecule activity