Csor.00g198510 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g198510
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr03: 3816068 .. 3817033 (-)
RNA-Seq ExpressionCsor.00g198510
SyntenyCsor.00g198510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGGCTGTGCTTGTGGGGGATTGAAATGAGTTTCTTAAATTCTATTTTCTTCATGCTATTTATTCTTGAGGACTGCTCCATTTATTTATTTTCTATCTTTCTGTGGTTATTTTAGTATTATTCTTATTATATTGTTCATATTCTTTGATTACAAGGGTGTGTTTGGCTGATGACAGTTTTGCATTTGTAAGATTGGTTTATGGAAATGTAAAGAAGATCCAATTATGGTTTGTCTTATTATTTGTTTGGAAGCATCAAGTTCGTGGTTCAGCTTGTTTCTAGCTCTGATATTTTTGCTCGTTGCCTGAATTTTTAGAAAACTGAAAAAATTTTATTCATTTGTGGTCGGGTCAAAAATAGAGTTATAATTCAATACGACTCAACGCTACATTTAACTAACTCGATAACGTTTGTACTCATAAATGTTTAATATTAATTTTTTTTTTTTGATGTCTAATAAAAAAACTGACAACAAATCTTAAAAGTATTGAATTTAATTCATGAATCTGTATCGTATAATAAAGAAAACCTTAGAAGGCTGTTTTTTTTTTCCTCAAACATTAAATTTAAGTTCATTTAAATTTTTTTAAAAGTTCTTAAATCTATAATTTTAAAAATTAGGTACTAAATATCTTTTTTTAGTTAATTTATATTCTTACACTTAGTTTTTTACGGAAACAATTTACTCTTACTCTTCTTCGAGACTCTCGTATTCTTCTTCTTTCATTCTCTAATCTCTAAGTCCCGATAATCTCTAAGTCCTGAAGATGAAAAATTGTTCATTCTATTTGAGGAAGTGGGTGGAAGCTTTGGAGATGAAGATGGCAAAGAAAATGAGAATGAGGTAAGCGGTCTTGACGATGAGGTTGGGCGGTTTGAAGCGGACATTAGAGGCAGGGGAAAGGGTCTTGCTGGAGTTGTTAGCGTCGTCGTTGCCATTGGTGGGCGACAAAGGAGGTGA

mRNA sequence

ATGGATTGGGTGTGTTTGGCTGATGACAGTTTTGCATTTGTAAGATTGGTTTATGGAAATGTAAAGAAGATCCAATTATGTCCTGAAGATGAAAAATTGTTCATTCTATTTGAGGAAGTGGGTGGAAGCTTTGGAGATGAAGATGGCAAAGAAAATGAGAATGAGGTAAGCGGTCTTGACGATGAGGTTGGGCGGTTTGAAGCGGACATTAGAGGCAGGGGAAAGGGTCTTGCTGGAGTTGTTAGCGTCGTCGTTGCCATTGGTGGGCGACAAAGGAGGTGA

Coding sequence (CDS)

ATGGATTGGGTGTGTTTGGCTGATGACAGTTTTGCATTTGTAAGATTGGTTTATGGAAATGTAAAGAAGATCCAATTATGTCCTGAAGATGAAAAATTGTTCATTCTATTTGAGGAAGTGGGTGGAAGCTTTGGAGATGAAGATGGCAAAGAAAATGAGAATGAGGTAAGCGGTCTTGACGATGAGGTTGGGCGGTTTGAAGCGGACATTAGAGGCAGGGGAAAGGGTCTTGCTGGAGTTGTTAGCGTCGTCGTTGCCATTGGTGGGCGACAAAGGAGGTGA

Protein sequence

MDWVCLADDSFAFVRLVYGNVKKIQLCPEDEKLFILFEEVGGSFGDEDGKENENEVSGLDDEVGRFEADIRGRGKGLAGVVSVVVAIGGRQRR
Homology
[Close]
BLAST of Csor.00g198510 vs. NCBI nr
Match: KAG6603477.1 (hypothetical protein SDJN03_04086, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187 bits (475), Expect = 9.36e-60
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MDWVCLADDSFAFVRLVYGNVKKIQLCPEDEKLFILFEEVGGSFGDEDGKENENEVSGLD 60
          MDWVCLADDSFAFVRLVYGNVKKIQLCPEDEKLFILFEEVGGSFGDEDGKENENEVSGLD
Sbjct: 1  MDWVCLADDSFAFVRLVYGNVKKIQLCPEDEKLFILFEEVGGSFGDEDGKENENEVSGLD 60

Query: 61 DEVGRFEADIRGRGKGLAGVVSVVVAIGGRQRR 93
          DEVGRFEADIRGRGKGLAGVVSVVVAIGGRQRR
Sbjct: 61 DEVGRFEADIRGRGKGLAGVVSVVVAIGGRQRR 93

[Close]
BLAST of Csor.00g198510 vs. NCBI nr
Match: KAG7033660.1 (Binding partner of ACD11 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104 bits (260), Expect = 1.20e-24
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 39  EVGGSFGDEDGKENENEVSGLDDEVGRFEADIRGRGKGLAGVVSVVVAIGGRQRR 93
           EVGGSFGDEDGKE+ENEVSGLDDEVGRFEADIRGRGKGLAGVVSVVVAIGGRQRR
Sbjct: 266 EVGGSFGDEDGKEDENEVSGLDDEVGRFEADIRGRGKGLAGVVSVVVAIGGRQRR 320

The following BLAST results are available for this feature:
BLAST of Csor.00g198510 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g198510 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6603477.19.36e-60100.00hypothetical protein SDJN03_04086, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7033660.11.20e-2498.18Binding partner of ACD11 1 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Csor.00g198510 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g198510 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g198510.m01Csor.00g198510.m01mRNA