Csor.00g198330 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g198330
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein PNS1-like
Location	Csor_Chr03: 3567207 .. 3567814 (+)
RNA-Seq Expression	Csor.00g198330
Synteny	Csor.00g198330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTGGTGGCAGGAGACTCGGATGAGTTCCTTTTCTCTTGTGCACCCTGCTACTCAGAATTAGCTTCAATGCTGAGAAACCATGGAAACAGGTGGGGTTTTGTCCATGTTGGAGTTTACAATAAAGGGATTGTGCAAGCTTCATATGATACCTGGGAGGCATTCGAGAAGGTGGATTTGGAAATCGTTATAGACTCCGATCTCACCGTGTCGTTCTGCGTTCTTTGCGGGGTTTCGGGTGGTGCAATCTGTAGCATTATAAGTGGGATCTGGGCACTTGTAATACATAAGAGCTACGCAACAGAATTAGCAATCTACGCCTTCCTGATTGGCTATTTTGTGGTAATGAGCTGAAATATTTTAGAGGGAACTGTTCTAAACTGTAACTGAATTTAATGGTAATACCTGAGAGGAATTTAACTTCTGGATAACAATGTTCATGGTTGTTGTTGTTGTTGTTGTTGCAGTGTCGAATCGGAATGGCATGGCCACAAGCATGTGTGTCTGCCTACTATGTAGCTTATGCAGACAATCCCCTGCATCCTCGGTTCGACTCCACCGTGCCAGACCGGATTCGAGAACTTCGGCGGAGGTTGCAAGTTTAA

mRNA sequence

ATGAGGTTGGTGGCAGGAGACTCGGATGAGTTCCTTTTCTCTTGTGCACCCTGCTACTCAGAATTAGCTTCAATGCTGAGAAACCATGGAAACAGGTGGGGTTTTGTCCATGTTGGAGTTTACAATAAAGGGATTGTGCAAGCTTCATATGATACCTGGGAGGCATTCGAGAAGGTGGATTTGGAAATCGTTATAGACTCCGATCTCACCGTGTCGTTCTGCGTTCTTTGCGGGGTTTCGGGTGGTGCAATCTGTAGCATTATAAGTGGGATCTGGGCACTTGTAATACATAAGAGCTACGCAACAGAATTAGCAATCTACGCCTTCCTGATTGGCTATTTTGTGTGTCGAATCGGAATGGCATGGCCACAAGCATGTGTGTCTGCCTACTATGTAGCTTATGCAGACAATCCCCTGCATCCTCGGTTCGACTCCACCGTGCCAGACCGGATTCGAGAACTTCGGCGGAGGTTGCAAGTTTAA

Coding sequence (CDS)

ATGAGGTTGGTGGCAGGAGACTCGGATGAGTTCCTTTTCTCTTGTGCACCCTGCTACTCAGAATTAGCTTCAATGCTGAGAAACCATGGAAACAGGTGGGGTTTTGTCCATGTTGGAGTTTACAATAAAGGGATTGTGCAAGCTTCATATGATACCTGGGAGGCATTCGAGAAGGTGGATTTGGAAATCGTTATAGACTCCGATCTCACCGTGTCGTTCTGCGTTCTTTGCGGGGTTTCGGGTGGTGCAATCTGTAGCATTATAAGTGGGATCTGGGCACTTGTAATACATAAGAGCTACGCAACAGAATTAGCAATCTACGCCTTCCTGATTGGCTATTTTGTGTGTCGAATCGGAATGGCATGGCCACAAGCATGTGTGTCTGCCTACTATGTAGCTTATGCAGACAATCCCCTGCATCCTCGGTTCGACTCCACCGTGCCAGACCGGATTCGAGAACTTCGGCGGAGGTTGCAAGTTTAA

Protein sequence

MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVDLEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGMAWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV

Homology

[Close]

BLAST of Csor.00g198330 vs. NCBI nr
Match: KAG6603459.1 (hypothetical protein SDJN03_04068, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 327 bits (838), Expect = 5.79e-113
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 60
           MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD
Sbjct: 1   MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 60

Query: 61  LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 120
           LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM
Sbjct: 61  LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 120

Query: 121 AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV 160
           AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV
Sbjct: 121 AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV 160

[Close]

BLAST of Csor.00g198330 vs. NCBI nr
Match: XP_023543456.1 (protein PNS1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327 bits (838), Expect = 1.10e-108
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 60
           MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD
Sbjct: 296 MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 355

Query: 61  LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 120
           LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM
Sbjct: 356 LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 415

Query: 121 AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV 160
           AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV
Sbjct: 416 AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV 455

[Close]

BLAST of Csor.00g198330 vs. NCBI nr
Match: XP_022950675.1 (protein PNS1-like [Cucurbita moschata] >KAG7033642.1 PNS1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 327 bits (838), Expect = 1.10e-108
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 60
           MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD
Sbjct: 296 MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 355

Query: 61  LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 120
           LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM
Sbjct: 356 LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 415

Query: 121 AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV 160
           AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV
Sbjct: 416 AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV 455

[Close]

BLAST of Csor.00g198330 vs. NCBI nr
Match: XP_022978167.1 (protein PNS1-like [Cucurbita maxima])

HSP 1 Score: 325 bits (832), Expect = 8.88e-108
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 60
           MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD
Sbjct: 296 MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 355

Query: 61  LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 120
           LEIVIDSDLTVSFCVLCGVS GAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM
Sbjct: 356 LEIVIDSDLTVSFCVLCGVSSGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 415

Query: 121 AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV 160
           AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV
Sbjct: 416 AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV 455

[Close]

BLAST of Csor.00g198330 vs. NCBI nr
Match: XP_038881864.1 (protein PNS1-like [Benincasa hispida])

HSP 1 Score: 292 bits (748), Expect = 4.19e-95
Identity = 141/156 (90.38%), Postives = 149/156 (95.51%), Query Frame = 0


Query: 1   MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 60
           MRLVAGDSDEFLFSCA CYS LA MLRNHGNRWGFVHVGVYNKGIVQAS+DTWEAF++VD
Sbjct: 289 MRLVAGDSDEFLFSCAHCYSGLALMLRNHGNRWGFVHVGVYNKGIVQASHDTWEAFKRVD 348

Query: 61  LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 120
           L I+ID DLTVSFCVLCGVSGGAICS+ISGIWALVIHKSYATELAIY FLIGYF+CRI M
Sbjct: 349 LGILIDYDLTVSFCVLCGVSGGAICSLISGIWALVIHKSYATELAIYTFLIGYFLCRIAM 408

Query: 121 AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRR 156
           AWPQACVSAYYVAYADNPLHPRFDSTVP++IRELRR
Sbjct: 409 AWPQACVSAYYVAYADNPLHPRFDSTVPEKIRELRR 444

[Close]

BLAST of Csor.00g198330 vs. ExPASy TrEMBL
Match: A0A6J1GGE9 (protein PNS1-like OS=Cucurbita moschata OX=3662 GN=LOC111453700 PE=3 SV=1)

HSP 1 Score: 327 bits (838), Expect = 5.32e-109
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 60
           MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD
Sbjct: 296 MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 355

Query: 61  LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 120
           LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM
Sbjct: 356 LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 415

Query: 121 AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV 160
           AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV
Sbjct: 416 AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV 455

[Close]

BLAST of Csor.00g198330 vs. ExPASy TrEMBL
Match: A0A6J1IKE0 (protein PNS1-like OS=Cucurbita maxima OX=3661 GN=LOC111478231 PE=3 SV=1)

HSP 1 Score: 325 bits (832), Expect = 4.30e-108
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 60
           MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD
Sbjct: 296 MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 355

Query: 61  LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 120
           LEIVIDSDLTVSFCVLCGVS GAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM
Sbjct: 356 LEIVIDSDLTVSFCVLCGVSSGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 415

Query: 121 AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV 160
           AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV
Sbjct: 416 AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV 455

[Close]

BLAST of Csor.00g198330 vs. ExPASy TrEMBL
Match: A0A6J1HSE2 (protein PNS1-like OS=Cucurbita maxima OX=3661 GN=LOC111466175 PE=3 SV=1)

HSP 1 Score: 287 bits (735), Expect = 3.41e-94
Identity = 137/159 (86.16%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 1   MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 60
           MRL AG+ DEFLFSCA CYS +ASMLR+ GNRWGFVHVGVYNKGIV+ASYDTWEAF++ D
Sbjct: 237 MRLAAGEQDEFLFSCAHCYSAIASMLRSRGNRWGFVHVGVYNKGIVEASYDTWEAFKRAD 296

Query: 61  LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 120
           LEIVI+SDLTVSFC LCG+SGGAICSIISGIWALVIHKSYATELAIYAFLIGY +CRIGM
Sbjct: 297 LEIVINSDLTVSFCFLCGLSGGAICSIISGIWALVIHKSYATELAIYAFLIGYCLCRIGM 356

Query: 121 AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQ 159
           AWPQAC+SAYYVAYADNP HPRFDSTVP++IR+LRRRLQ
Sbjct: 357 AWPQACISAYYVAYADNPQHPRFDSTVPEQIRDLRRRLQ 395

[Close]

BLAST of Csor.00g198330 vs. ExPASy TrEMBL
Match: A0A6J1DKG3 (protein PNS1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021760 PE=3 SV=1)

HSP 1 Score: 287 bits (734), Expect = 2.71e-93
Identity = 140/160 (87.50%), Postives = 148/160 (92.50%), Query Frame = 0


Query: 1   MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 60
           MRL+AG+SDEFLFSCA C S +AS LRNHGNRWGFVHVGVYNKG+VQAS DTWEAF+KV+
Sbjct: 295 MRLMAGESDEFLFSCAHCCSGIASTLRNHGNRWGFVHVGVYNKGMVQASVDTWEAFKKVE 354

Query: 61  LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 120
           LE VID DLTVSFC LCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYF+CRIGM
Sbjct: 355 LEAVIDYDLTVSFCFLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFLCRIGM 414

Query: 121 AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV 160
           AWPQACVSAYYVAYADNP HPRFDS VP RIREL+RRLQ 
Sbjct: 415 AWPQACVSAYYVAYADNPQHPRFDSMVPQRIRELQRRLQA 454

[Close]

BLAST of Csor.00g198330 vs. ExPASy TrEMBL
Match: A0A6J1DLU3 (protein PNS1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021760 PE=3 SV=1)

HSP 1 Score: 287 bits (734), Expect = 2.87e-93
Identity = 140/160 (87.50%), Postives = 148/160 (92.50%), Query Frame = 0


Query: 1   MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 60
           MRL+AG+SDEFLFSCA C S +AS LRNHGNRWGFVHVGVYNKG+VQAS DTWEAF+KV+
Sbjct: 297 MRLMAGESDEFLFSCAHCCSGIASTLRNHGNRWGFVHVGVYNKGMVQASVDTWEAFKKVE 356

Query: 61  LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 120
           LE VID DLTVSFC LCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYF+CRIGM
Sbjct: 357 LEAVIDYDLTVSFCFLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFLCRIGM 416

Query: 121 AWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELRRRLQV 160
           AWPQACVSAYYVAYADNP HPRFDS VP RIREL+RRLQ 
Sbjct: 417 AWPQACVSAYYVAYADNPQHPRFDSMVPQRIRELQRRLQA 456

[Close]

BLAST of Csor.00g198330 vs. TAIR 10
Match: AT3G03700.1 (Plasma-membrane choline transporter family protein )

HSP 1 Score: 186.4 bits (472), Expect = 1.8e-47
Identity = 88/156 (56.41%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 1   MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEK-V 60
           + L++G SDE ++S A C+S +A+ L   GNRWGFVHVG Y+KG ++AS DTW+ F    
Sbjct: 302 VNLMSGSSDEVMYSGADCFSTIANKLITLGNRWGFVHVGTYDKGFMEASSDTWKKFRSTT 361

Query: 61  DLEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIG 120
            LE +IDSDLT SFC L  VS GA+ S+ +GIW L+IHK YA E+ +YAF+IGYFV R+G
Sbjct: 362 GLEKLIDSDLTSSFCFLSAVSVGAVSSLTAGIWMLLIHKDYALEVTLYAFIIGYFVGRVG 421

Query: 121 MAWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELR 156
           +AW QACV AYYVAY+++P   RFD T+P RI+ L+
Sbjct: 422 LAWLQACVLAYYVAYSEDPQSMRFDGTIPQRIQRLQ 457

[Close]

BLAST of Csor.00g198330 vs. TAIR 10
Match: AT3G04440.1 (Plasma-membrane choline transporter family protein )

HSP 1 Score: 186.4 bits (472), Expect = 1.8e-47
Identity = 88/156 (56.41%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 1   MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEK-V 60
           + L++G SDE ++S A C+S +A+ L   GNRWGFVHVG Y+KG ++AS DTW+ F    
Sbjct: 302 VNLMSGSSDEVMYSGADCFSTIANKLITLGNRWGFVHVGTYDKGFMEASSDTWKKFRSTT 361

Query: 61  DLEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIG 120
            LE +IDSDLT SFC L  VS GA+ S+ +GIW L+IHK YA E+ +YAF+IGYFV R+G
Sbjct: 362 GLEKLIDSDLTSSFCFLSAVSVGAVSSLTAGIWMLLIHKDYALEVTLYAFIIGYFVGRVG 421

Query: 121 MAWPQACVSAYYVAYADNPLHPRFDSTVPDRIRELR 156
           +AW QACV AYYVAY+++P   RFD T+P RI+ L+
Sbjct: 422 LAWLQACVLAYYVAYSEDPQSMRFDGTIPQRIQRLQ 457

[Close]

BLAST of Csor.00g198330 vs. TAIR 10
Match: AT5G17830.1 (Plasma-membrane choline transporter family protein )

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-33
Identity = 67/141 (47.52%), Postives = 95/141 (67.38%), Query Frame = 0


Query: 12  LFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKV-DLEIVIDSDLT 71
           +++  P  + +A+ +   GNR+GFVHVG +NKG+ QAS DTW  F  + + E +ID D+T
Sbjct: 307 IYASTPGCNWIANHIILGGNRYGFVHVGAHNKGLRQASSDTWRRFRTIPEFEQLIDFDIT 366

Query: 72  VSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGMAWPQACVSAY 131
            S C    +  GAI ++ +G+W L+I K +  EL IYAF+IGYFV R+  AW QACV  Y
Sbjct: 367 SSICFFSAMGIGAIAALTAGVWELLIDKDHYFELTIYAFIIGYFVGRVSSAWLQACVMGY 426

Query: 132 YVAYADNPLHPRFDSTVPDRI 152
           YVAY+++P + RFD T+P RI
Sbjct: 427 YVAYSEDPQNDRFDDTIPQRI 447

[Close]

BLAST of Csor.00g198330 vs. TAIR 10
Match: AT5G13760.1 (Plasma-membrane choline transporter family protein )

HSP 1 Score: 138.7 bits (348), Expect = 4.2e-33
Identity = 61/147 (41.50%), Postives = 87/147 (59.18%), Query Frame = 0


Query: 1   MRLVAGDSDEFLFSCAPCYSELASMLRNHGNRWGFVHVGVYNKGIVQASYDTWEAFEKVD 60
           + L+ G+ DEF+F CA C   L   +  HGN W FV +  Y KG V+AS DTW+ FE  D
Sbjct: 397 LNLLKGE-DEFMFCCANCCLRLMDFIFEHGNGWAFVQIAAYGKGFVRASQDTWKLFEDED 456

Query: 61  LEIVIDSDLTVSFCVLCGVSGGAICSIISGIWALVIHKSYATELAIYAFLIGYFVCRIGM 120
           +  ++D+D+T S C L G+  G +C I++  W   ++K +   +++ AF IGY + RI M
Sbjct: 457 MVEIVDADITSSICFLTGICSGCVCLIVAAAWTHTVYKPFTATISLLAFFIGYLMTRISM 516

Query: 121 AWPQACVSAYYVAYADNPLHPRFDSTV 148
           A P ACV  YY  YA+NP    F+  V
Sbjct: 517 ALPHACVGCYYTCYAENPESRFFEDKV 542

The following BLAST results are available for this feature:

BLAST of Csor.00g198330 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g198330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603459.1	5.79e-113	100.00	hypothetical protein SDJN03_04068, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023543456.1	1.10e-108	100.00	protein PNS1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022950675.1	1.10e-108	100.00	protein PNS1-like [Cucurbita moschata] >KAG7033642.1 PNS1, partial [Cucurbita ar...	[more]
XP_022978167.1	8.88e-108	99.38	protein PNS1-like [Cucurbita maxima]	[more]
XP_038881864.1	4.19e-95	90.38	protein PNS1-like [Benincasa hispida]	[more]

BLAST of Csor.00g198330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGE9	5.32e-109	100.00	protein PNS1-like OS=Cucurbita moschata OX=3662 GN=LOC111453700 PE=3 SV=1	[more]
A0A6J1IKE0	4.30e-108	99.38	protein PNS1-like OS=Cucurbita maxima OX=3661 GN=LOC111478231 PE=3 SV=1	[more]
A0A6J1HSE2	3.41e-94	86.16	protein PNS1-like OS=Cucurbita maxima OX=3661 GN=LOC111466175 PE=3 SV=1	[more]
A0A6J1DKG3	2.71e-93	87.50	protein PNS1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021760 PE=3...	[more]
A0A6J1DLU3	2.87e-93	87.50	protein PNS1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021760 PE=3...	[more]

BLAST of Csor.00g198330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03700.1	1.8e-47	56.41	Plasma-membrane choline transporter family protein	[more]
AT3G04440.1	1.8e-47	56.41	Plasma-membrane choline transporter family protein	[more]
AT5G17830.1	1.9e-33	47.52	Plasma-membrane choline transporter family protein	[more]
AT5G13760.1	4.2e-33	41.50	Plasma-membrane choline transporter family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007603	Choline transporter-like	PFAM	PF04515	Choline_transpo	coord: 11..136 e-value: 2.6E-9 score: 36.8
IPR007603	Choline transporter-like	PANTHER	PTHR12385	CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)	coord: 1..156
None	No IPR available	PANTHER	PTHR12385:SF84	F20H23.27 PROTEIN-RELATED	coord: 1..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g198330.m01	Csor.00g198330.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity