Csor.00g197200 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g197200
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	TATA-binding protein-associated factor 2N isoform X3
Location	Csor_Chr01: 613984 .. 614785 (+)
RNA-Seq Expression	Csor.00g197200
Synteny	Csor.00g197200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGACCGGGAGACTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGAGGGACATGTGCCAGCGCTGCGGGGACCCCAAGTCCGGCGGCGGTGGATGTGATTTTGGAGCTCTGTTAAACGGCGGCGGAAGAGGCGGGTCTGGATTCGGGTACGGCGGCTCCGATGTGAGGCCCGGCGACTGGTATTGCAGCATAGGGAACTGTGGAGCCCACAACTTCGCAAGCAGGTCGAGCTGCTTCAAATGTGGGGCGTTCAAAGACGACATGTCGGCTGCAGCAGGAGGCTTCGACTTCGATATGCCGCGCTCTAGAGGACTGTCCCCTTTTGGTTTTGCCAATCCCGCCGCCGCCGCCGCCGCCCGTACTGGTGCCTCCGCTTGGAAATCTGGTGACTGGATTTGCGCCAGGTACCCCTAACTCTCCTGCCATCAAAAATTTTAAACGTAATTTTTTTTTCACCTTAATTTTTAATTTTATGAGTTTTCAAATGAAATTAATTTCTTTTATTAAAAAAAAAATGAAATATGAAATGAGGCCCATTTATTTTTTAAAAAAAGATACTAAAATGTAAAGAAACAGGTCGGGATGCAATGAACATAACTTTGCGAGTAGGATGGAATGCTTTAGATGCAGTGCTCCAAAAGACTCGTATTAACAAAGCCAACGTCCTCCTTCATCAAGTTTTGGGTACGTGCTTTAACATAAATAATTTAAAAAAATGAAAAATTTTATGTTATTTACTTATTTATGTATTTATTTATTTGCAGGTATGCTTCGAAGAGAGCAAATTTGA

mRNA sequence

ATGAGCAGACCGGGAGACTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGAGGGACATGTGCCAGCGCTGCGGGGACCCCAAGTCCGGCGGCGGTGGATGTGATTTTGGAGCTCTGTTAAACGGCGGCGGAAGAGGCGGGTCTGGATTCGGGTACGGCGGCTCCGATCAGGAGGCTTCGACTTCGATATGCCGCGCTCTAGAGGACTGTCCCCTTTTGGTTTTGCCAATCCCGCCGCCGCCGCCGCCGCCCGTACTGGTGCCTCCGCTTGGAAATCTGGTGACTGGATTTGCGCCAGGTCGGGATGCAATGAACATAACTTTGCGAGTAGGATGGAATGCTTTAGATGCAGTGCTCCAAAAGACTCGTATTAACAAAGCCAACGTCCTCCTTCATCAAGTTTTGGGTATGCTTCGAAGAGAGCAAATTTGA

Coding sequence (CDS)

ATGAGCAGACCGGGAGACTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGAGGGACATGTGCCAGCGCTGCGGGGACCCCAAGTCCGGCGGCGGTGGATGTGATTTTGGAGCTCTGTTAAACGGCGGCGGAAGAGGCGGGTCTGGATTCGGGTACGGCGGCTCCGATCAGGAGGCTTCGACTTCGATATGCCGCGCTCTAGAGGACTGTCCCCTTTTGGTTTTGCCAATCCCGCCGCCGCCGCCGCCGCCCGTACTGGTGCCTCCGCTTGGAAATCTGGTGACTGGATTTGCGCCAGGTCGGGATGCAATGAACATAACTTTGCGAGTAGGATGGAATGCTTTAGATGCAGTGCTCCAAAAGACTCGTATTAACAAAGCCAACGTCCTCCTTCATCAAGTTTTGGGTATGCTTCGAAGAGAGCAAATTTGA

Protein sequence

MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDQEASTSICRALEDCPLLVLPIPPPPPPPVLVPPLGNLVTGFAPGRDAMNITLRVGWNALDAVLQKTRINKANVLLHQVLGMLRREQI

Homology

[Close]

BLAST of Csor.00g197200 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 6.2e-04
Identity = 29/70 (41.43%), Postives = 33/70 (47.14%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDMCQRCGDPK-------SGGGGCDFGALLNGGG------RGG 60
           R GDW C SC + NF  R+ C RC  PK        GGGG  +G    GGG      RG 
Sbjct: 275 RDGDWKCNSCNNTNFAWRNECNRCKTPKGDDEGSSGGGGGGGYGGGGGGGGYDRGNDRGS 334

[Close]

BLAST of Csor.00g197200 vs. ExPASy Swiss-Prot
Match: P32770 (Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NRP1 PE=1 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 8.1e-04
Identity = 18/27 (66.67%), Postives = 18/27 (66.67%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDMCQRCGDP 30
           RPGDWNC SC   NFQRR  C RC  P
Sbjct: 355 RPGDWNCPSCGFSNFQRRTACFRCSFP 381

[Close]

BLAST of Csor.00g197200 vs. NCBI nr
Match: KAG6606788.1 (hypothetical protein SDJN03_00130, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 297 bits (761), Expect = 1.03e-101
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDQE 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDQE
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDQE 60

Query: 61  ASTSICRALEDCPLLVLPIPPPPPPPVLVPPLGNLVTGFAPGRDAMNITLRVGWNALDAV 120
           ASTSICRALEDCPLLVLPIPPPPPPPVLVPPLGNLVTGFAPGRDAMNITLRVGWNALDAV
Sbjct: 61  ASTSICRALEDCPLLVLPIPPPPPPPVLVPPLGNLVTGFAPGRDAMNITLRVGWNALDAV 120

Query: 121 LQKTRINKANVLLHQVLGMLRREQI 145
           LQKTRINKANVLLHQVLGMLRREQI
Sbjct: 121 LQKTRINKANVLLHQVLGMLRREQI 145

[Close]

BLAST of Csor.00g197200 vs. NCBI nr
Match: XP_022998918.1 (TATA-binding protein-associated factor 2N isoform X3 [Cucurbita maxima])

HSP 1 Score: 131 bits (329), Expect = 1.02e-35
Identity = 59/66 (89.39%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDQE 60
          MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSD  
Sbjct: 1  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61 ASTSIC 66
               C
Sbjct: 61 PGDWYC 66

[Close]

BLAST of Csor.00g197200 vs. NCBI nr
Match: XP_022948551.1 (TATA-binding protein-associated factor 2N isoform X3 [Cucurbita moschata])

HSP 1 Score: 131 bits (329), Expect = 1.02e-35
Identity = 59/66 (89.39%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDQE 60
          MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSD  
Sbjct: 1  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61 ASTSIC 66
               C
Sbjct: 61 PGDWYC 66

[Close]

BLAST of Csor.00g197200 vs. NCBI nr
Match: XP_023525213.1 (transcription initiation factor TFIID subunit 15b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131 bits (329), Expect = 1.05e-35
Identity = 59/66 (89.39%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDQE 60
          MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSD  
Sbjct: 1  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61 ASTSIC 66
               C
Sbjct: 61 PGDWYC 66

[Close]

BLAST of Csor.00g197200 vs. NCBI nr
Match: KAG7036500.1 (hypothetical protein SDJN02_00117 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131 bits (329), Expect = 1.44e-35
Identity = 59/66 (89.39%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDQE 60
          MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSD  
Sbjct: 1  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61 ASTSIC 66
               C
Sbjct: 61 PGDWYC 66

[Close]

BLAST of Csor.00g197200 vs. ExPASy TrEMBL
Match: A0A6J1KI51 (TATA-binding protein-associated factor 2N isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111493437 PE=4 SV=1)

HSP 1 Score: 131 bits (329), Expect = 4.92e-36
Identity = 59/66 (89.39%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDQE 60
          MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSD  
Sbjct: 1  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61 ASTSIC 66
               C
Sbjct: 61 PGDWYC 66

[Close]

BLAST of Csor.00g197200 vs. ExPASy TrEMBL
Match: A0A6J1G9I4 (TATA-binding protein-associated factor 2N isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111452195 PE=4 SV=1)

HSP 1 Score: 131 bits (329), Expect = 4.92e-36
Identity = 59/66 (89.39%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDQE 60
          MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSD  
Sbjct: 1  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61 ASTSIC 66
               C
Sbjct: 61 PGDWYC 66

[Close]

BLAST of Csor.00g197200 vs. ExPASy TrEMBL
Match: A0A5A7TRE1 (Putative RNA-binding protein C17H9.04c-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001610 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 2.36e-35
Identity = 87/172 (50.58%), Postives = 97/172 (56.40%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDQE 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCG+PKSGGG           GRGGSGFGYGGSD  
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGV----------GRGGSGFGYGGSDVR 60

Query: 61  ----------------ASTSICRAL----EDCPLLVLPIPPPPP----PPVLVPPLGNLV 120
                           AS S C       +D       IP P P    P     P     
Sbjct: 61  PGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAFASPARAAA 120

Query: 121 TGFAPGRDAMNITLRVGWNALDAVLQKTRINK---ANVLLH-QVLGMLRREQ 144
           + +  GR AMNITL+ GW+ALDAVL++T  NK   A +LLH QVLGML  E+
Sbjct: 121 SAWKSGRVAMNITLQAGWSALDAVLRETPTNKTSQAKILLHHQVLGMLSTEK 162

[Close]

BLAST of Csor.00g197200 vs. ExPASy TrEMBL
Match: A0A6J1GA82 (periodic tryptophan protein 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452195 PE=4 SV=1)

HSP 1 Score: 131 bits (329), Expect = 4.34e-34
Identity = 59/66 (89.39%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDQE 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSD  
Sbjct: 181 MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 240

Query: 61  ASTSIC 66
                C
Sbjct: 241 PGDWYC 246

[Close]

BLAST of Csor.00g197200 vs. ExPASy TrEMBL
Match: A0A6J1K9C2 (periodic tryptophan protein 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493437 PE=4 SV=1)

HSP 1 Score: 131 bits (329), Expect = 4.34e-34
Identity = 59/66 (89.39%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDQE 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSD  
Sbjct: 181 MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 240

Query: 61  ASTSIC 66
                C
Sbjct: 241 PGDWYC 246

[Close]

BLAST of Csor.00g197200 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-14
Identity = 44/70 (62.86%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 1  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG---GGCDFGALLNGGGRGGSGFGY-GG 60
          MSRPGDWNCRSC HLNFQRRD CQRCGD +SG    GG DFG   N GGR  S FG+  G
Sbjct: 1  MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFG---NFGGRAMSAFGFTTG 60

Query: 61 SDQEASTSIC 67
          SD       C
Sbjct: 61 SDVRPGDWYC 67

[Close]

BLAST of Csor.00g197200 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-11
Identity = 41/75 (54.67%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 1  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNG-GGRG-GSGFGYG-GS 60
          M+RPGDWNCR C HLNFQRRD CQRC +P+ GG   D   LL+G GGR   S FG+  G 
Sbjct: 1  MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTD---LLSGFGGRPVSSSFGFNTGP 60

Query: 61 DQEASTSICRALEDC 73
          D       C  L DC
Sbjct: 61 DVRPGDWYCN-LGDC 71

[Close]

BLAST of Csor.00g197200 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.3e-06
Identity = 18/29 (62.07%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 5  GDWNCRSCQHLNFQRRDMCQRCGDPKSGG 34
          GDW C +CQH NF++R+ CQ+CG PK GG
Sbjct: 6  GDWLCGACQHANFKKRESCQKCGYPKFGG 34

[Close]

BLAST of Csor.00g197200 vs. TAIR 10
Match: AT1G48570.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 42.4 bits (98), Expect = 3.7e-04
Identity = 13/26 (50.00%), Postives = 19/26 (73.08%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRC 27
           ++ PGDW C SC  +NF+R D C++C
Sbjct: 407 LAEPGDWECPSCDFVNFRRNDACKKC 432

The following BLAST results are available for this feature:

BLAST of Csor.00g197200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q27294	6.2e-04	41.43	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2	[more]
P32770	8.1e-04	66.67	Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)...	[more]

BLAST of Csor.00g197200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606788.1	1.03e-101	100.00	hypothetical protein SDJN03_00130, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022998918.1	1.02e-35	89.39	TATA-binding protein-associated factor 2N isoform X3 [Cucurbita maxima]	[more]
XP_022948551.1	1.02e-35	89.39	TATA-binding protein-associated factor 2N isoform X3 [Cucurbita moschata]	[more]
XP_023525213.1	1.05e-35	89.39	transcription initiation factor TFIID subunit 15b-like [Cucurbita pepo subsp. pe...	[more]
KAG7036500.1	1.44e-35	89.39	hypothetical protein SDJN02_00117 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Csor.00g197200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KI51	4.92e-36	89.39	TATA-binding protein-associated factor 2N isoform X3 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1G9I4	4.92e-36	89.39	TATA-binding protein-associated factor 2N isoform X3 OS=Cucurbita moschata OX=36...	[more]
A0A5A7TRE1	2.36e-35	50.58	Putative RNA-binding protein C17H9.04c-like OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1GA82	4.34e-34	89.39	periodic tryptophan protein 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1K9C2	4.34e-34	89.39	periodic tryptophan protein 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]

BLAST of Csor.00g197200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15680.1	1.4e-14	62.86	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	1.8e-11	54.67	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	2.3e-06	62.07	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT1G48570.1	3.7e-04	50.00	zinc finger (Ran-binding) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 5..29 e-value: 9.1E-5 score: 31.8
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 3..32 score: 9.777556
None	No IPR available	GENE3D	4.10.1060.10		coord: 2..33 e-value: 2.4E-10 score: 41.5
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..57
None	No IPR available	PANTHER	PTHR23111:SF74	OS02G0203700 PROTEIN	coord: 1..57
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g197200.m01	Csor.00g197200.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding