Csor.00g196970 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g196970
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative
Location	Csor_Chr01: 696416 .. 697618 (+)
RNA-Seq Expression	Csor.00g196970
Synteny	Csor.00g196970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAAGGATTGGCGGTCCCCGAGAGAGGAGTAAGATCGGTAACTTATGGCGTTTCAACCGCTTCATTGATAACCGGTGCTTGGCTCCGCTTACGCTCGACGGAGACGGTGATGTTGACGCTCTCAGACGGCGGCCTTATCGGTTGCTTCCTCGGCTGGAGCTCATTGATCTCTTTGTTCTCAAGCTCGACGGCTCTGTATTTGGTGATTCCTTTGCCATTTCTGTCCTCTTCTTTCATTCTTTCTTTTTTACTCTGTTTCTTGCAAGAAATCAGAACTATATCATGTATGAATTTCGCTTTTGCTTCGAGATGAACTATCGTTTGCTATTTAGGTGGTCGAGATGAAACTTGAAAACGGCATGGAAACGGAAAGTGCTTAAAGATAACCTGCTTAAGAATTAAGAGAATAGAATCGATTACTTTTATGAGAACACTGTAGTGGAAAGTGTTTGAAAAGAGTGACTAATTAAAGTGTAATGGCTTATGGCGAATATGACTAAGATAAATGCGATATCAAGAAAAGTAACTCTCGTTATTCCTTTACATTATTCCTCTTTTTCCCCCCTGCTTTATAGCTGTGGAGAATGTGTACAGTGAAAATAACCAAATATTTGAAGCCAATCGTTCTTTGTATTGCTAGAATTACAGTGTTATTAACTATAATTTGAATGGATTTGGTATGGTTTGGCTATCCAGGTGTTCGTGTAGCGCGCAATGGTACAGTAGCAGATCTCAAACAAGCGATAGAGGAAGTTTTTGATTCACCCGGGGCGAGCGAACACTGCAAGATTACATGGTAGTATTGACCATCTTATGAGACTTGTGACTAATTTTACCACCTTGATTTTGTTTTTGTTTCTATTGGGAGGTTTGTAATTTTATTTGAGTTTTGCATGAATGCATGTGCTCGTAGGTCACTTGTCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGGCATACATTAGAGTTGTAGGCATCAAAGATGGTGATCAGGTGTGACAATGTAGTGATGTGTCTCTTGCTTGTTTATTGAGTTGAATACTGCTGATCTGTAGCTTTTAATGTTTTGCCCTCGTATATTATGCAGCTTCAGTTTATTAGGCATATGTCTATCAACTGTCTACCAATGAAGAGAGATAGGAAGAACCAAGCCGTTCCTTGCAAAACAGTGTTGTTGTAA

mRNA sequence

ATGCGAAGGATTGGCGGTCCCCGAGAGAGGAGTAAGATCGGTAACTTATGGCGTTTCAACCGCTTCATTGATAACCGGTGCTTGGCTCCGCTTACGCTCGACGGAGACGGTGATGTTGACGCTCTCAGACGGCGGCCTTATCGGTTGCTTCCTCGGCTGGAGCTCATTGATCTCTTTGTTCTCAAGCTCGACGGCTCTGTATTTGGTGTTCGTGTAGCGCGCAATGGTACAGTAGCAGATCTCAAACAAGCGATAGAGGAAGTTTTTGATTCACCCGGGGCGAGCGAACACTGCAAGATTACATGGTCACTTGTCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGGCATACATTAGAGTTGTAGGCATCAAAGATGGTGATCAGCTTCAGTTTATTAGGCATATGTCTATCAACTGTCTACCAATGAAGAGAGATAGGAAGAACCAAGCCGTTCCTTGCAAAACAGTGTTGTTGTAA

Coding sequence (CDS)

ATGCGAAGGATTGGCGGTCCCCGAGAGAGGAGTAAGATCGGTAACTTATGGCGTTTCAACCGCTTCATTGATAACCGGTGCTTGGCTCCGCTTACGCTCGACGGAGACGGTGATGTTGACGCTCTCAGACGGCGGCCTTATCGGTTGCTTCCTCGGCTGGAGCTCATTGATCTCTTTGTTCTCAAGCTCGACGGCTCTGTATTTGGTGTTCGTGTAGCGCGCAATGGTACAGTAGCAGATCTCAAACAAGCGATAGAGGAAGTTTTTGATTCACCCGGGGCGAGCGAACACTGCAAGATTACATGGTCACTTGTCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGGCATACATTAGAGTTGTAGGCATCAAAGATGGTGATCAGCTTCAGTTTATTAGGCATATGTCTATCAACTGTCTACCAATGAAGAGAGATAGGAAGAACCAAGCCGTTCCTTGCAAAACAGTGTTGTTGTAA

Protein sequence

MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLL

Homology

[Close]

BLAST of Csor.00g196970 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-10
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 58  LFVLKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASE--HCKITWSLVWGHFCLCYEG 117
           L V+KLDGS   V V  + T+ DLK  I++  +    +   H  I+W  VW +FCL    
Sbjct: 54  LSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNN 113

Query: 118 EKLIDDKAYIRVVGIKDGDQLQFIRHM 143
           EKL+DD A ++ VGI++  Q+ F+ ++
Sbjct: 114 EKLLDDNAVLQDVGIRNNSQVTFMPYV 140

[Close]

BLAST of Csor.00g196970 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-09
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 60  VLKLDGSVFGVRVARNGTVADLKQAIEEVF----DSPGASEHCKITWSLVWGHFCLCYEG 119
           V K+DG V  V V +N TV DLK+AI+       +  G  +H  I+WS VW  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQH--ISWSYVWRTYHLTSAG 95

Query: 120 EKLIDDKAYIRVVGIKDGDQLQFIRHM 143
           EKL +D+  +R  GI++ D++ FI+ +
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of Csor.00g196970 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-09
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 60  VLKLDGSVFGVRVARNGTVADLKQAIEEVF----DSPGASEHCKITWSLVWGHFCLCYEG 119
           V K+DG V  V V +N TV DLK+AI+       +  G  +H  I+WS VW  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQH--ISWSYVWRTYHLTSAG 95

Query: 120 EKLIDDKAYIRVVGIKDGDQLQFIRHM 143
           EKL +D+  +R  GI++ D++ FI+ +
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of Csor.00g196970 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.6e-09
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 60  VLKLDGSVFGVRVARNGTVADLKQAIEEVF----DSPGASEHCKITWSLVWGHFCLCYEG 119
           V K+DG V  V V ++ TV DLK+AI+       +  G  +H  I+WS VW  + L   G
Sbjct: 45  VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQH--ISWSYVWRTYHLTSAG 104

Query: 120 EKLIDDKAYIRVVGIKDGDQLQFIRHM 143
           EKL +D+  +R  GI++ D++ FI+ +
Sbjct: 105 EKLTEDRKKLRDYGIRNRDEVSFIKKL 129

[Close]

BLAST of Csor.00g196970 vs. NCBI nr
Match: KAG6606810.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 348 bits (893), Expect = 3.46e-121
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60
           MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV
Sbjct: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60

Query: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID 120
           LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID 120

Query: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLL 165
           DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLL
Sbjct: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLL 165

[Close]

BLAST of Csor.00g196970 vs. NCBI nr
Match: XP_022948349.1 (uncharacterized protein LOC111452053 [Cucurbita moschata] >KAG7036517.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347 bits (889), Expect = 1.97e-119
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60
           MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV
Sbjct: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60

Query: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID 120
           LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID 120

Query: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVL 164
           DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVL
Sbjct: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVL 164

[Close]

BLAST of Csor.00g196970 vs. NCBI nr
Match: XP_023525469.1 (uncharacterized protein LOC111789062 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 346 bits (888), Expect = 2.80e-119
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60
           MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV
Sbjct: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60

Query: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID 120
           LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID 120

Query: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVL 164
           DKAYIRVVGIKDGDQLQF+RHMSINCLPMKRDRKNQAVPCKTVL
Sbjct: 121 DKAYIRVVGIKDGDQLQFVRHMSINCLPMKRDRKNQAVPCKTVL 164

[Close]

BLAST of Csor.00g196970 vs. NCBI nr
Match: XP_022998358.1 (uncharacterized protein LOC111493024 [Cucurbita maxima])

HSP 1 Score: 343 bits (881), Expect = 3.26e-118
Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60
           MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV
Sbjct: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60

Query: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID 120
           LKLDGSVFGVRVARNGTVADLKQAIEEVFDSP ASEHCKITWSLVWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPRASEHCKITWSLVWGHFCLCYEGEKLID 120

Query: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVL 164
           DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVL
Sbjct: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVL 164

[Close]

BLAST of Csor.00g196970 vs. NCBI nr
Match: XP_022153473.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Momordica charantia])

HSP 1 Score: 295 bits (756), Expect = 2.61e-100
Identity = 142/165 (86.06%), Postives = 150/165 (90.91%), Query Frame = 0


Query: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60
           M RIGG RERSKIGNLWRFNRFID RCLAP TLDGDGDVDAL R PYRLLPR +LIDLFV
Sbjct: 1   MPRIGG-RERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFV 60

Query: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID 120
           LKLDGSVFGVRVARNGTVA+LK+AIEEVF SPG  EHCKITWSLVWGHFCLCYEG+ LID
Sbjct: 61  LKLDGSVFGVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLID 120

Query: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLL 165
           DKA IRV GIKDGDQLQFIRHMSI+CLP+KRDRK+Q V C+TVLL
Sbjct: 121 DKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLL 164

[Close]

BLAST of Csor.00g196970 vs. ExPASy TrEMBL
Match: A0A6J1G9M5 (uncharacterized protein LOC111452053 OS=Cucurbita moschata OX=3662 GN=LOC111452053 PE=4 SV=1)

HSP 1 Score: 347 bits (889), Expect = 9.53e-120
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60
           MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV
Sbjct: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60

Query: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID 120
           LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID 120

Query: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVL 164
           DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVL
Sbjct: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVL 164

[Close]

BLAST of Csor.00g196970 vs. ExPASy TrEMBL
Match: A0A6J1KGI2 (uncharacterized protein LOC111493024 OS=Cucurbita maxima OX=3661 GN=LOC111493024 PE=4 SV=1)

HSP 1 Score: 343 bits (881), Expect = 1.58e-118
Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60
           MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV
Sbjct: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60

Query: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID 120
           LKLDGSVFGVRVARNGTVADLKQAIEEVFDSP ASEHCKITWSLVWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPRASEHCKITWSLVWGHFCLCYEGEKLID 120

Query: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVL 164
           DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVL
Sbjct: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVL 164

[Close]

BLAST of Csor.00g196970 vs. ExPASy TrEMBL
Match: A0A6J1DHJ6 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020973 PE=4 SV=1)

HSP 1 Score: 295 bits (756), Expect = 1.26e-100
Identity = 142/165 (86.06%), Postives = 150/165 (90.91%), Query Frame = 0


Query: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60
           M RIGG RERSKIGNLWRFNRFID RCLAP TLDGDGDVDAL R PYRLLPR +LIDLFV
Sbjct: 1   MPRIGG-RERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFV 60

Query: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID 120
           LKLDGSVFGVRVARNGTVA+LK+AIEEVF SPG  EHCKITWSLVWGHFCLCYEG+ LID
Sbjct: 61  LKLDGSVFGVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLID 120

Query: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLL 165
           DKA IRV GIKDGDQLQFIRHMSI+CLP+KRDRK+Q V C+TVLL
Sbjct: 121 DKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLL 164

[Close]

BLAST of Csor.00g196970 vs. ExPASy TrEMBL
Match: A0A6J1DGY1 (uncharacterized protein LOC111020973 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020973 PE=4 SV=1)

HSP 1 Score: 294 bits (752), Expect = 6.76e-99
Identity = 141/164 (85.98%), Postives = 149/164 (90.85%), Query Frame = 0


Query: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60
           M RIGG RERSKIGNLWRFNRFID RCLAP TLDGDGDVDAL R PYRLLPR +LIDLFV
Sbjct: 1   MPRIGG-RERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFV 60

Query: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID 120
           LKLDGSVFGVRVARNGTVA+LK+AIEEVF SPG  EHCKITWSLVWGHFCLCYEG+ LID
Sbjct: 61  LKLDGSVFGVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLID 120

Query: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVL 164
           DKA IRV GIKDGDQLQFIRHMSI+CLP+KRDRK+Q V C+TVL
Sbjct: 121 DKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVL 163

[Close]

BLAST of Csor.00g196970 vs. ExPASy TrEMBL
Match: A0A1S3BYS1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494657 PE=4 SV=1)

HSP 1 Score: 271 bits (694), Expect = 4.22e-91
Identity = 128/157 (81.53%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 9   ERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVF 68
           +R+KI NLWRF RFID RC AP TLD + D DAL RRPYRLLPR +LIDLFVLKLDGSVF
Sbjct: 9   DRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFVLKLDGSVF 68

Query: 69  GVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVV 128
           GVRV+RN TVADLK+AIEEVFDSPG SEH KITWSL+WGHFCLCYEGEKL DDKA IR  
Sbjct: 69  GVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTDDKACIRGY 128

Query: 129 GIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLL 165
            IKDGDQLQFIRHMSINCL MK+DRKNQ VPCKT+LL
Sbjct: 129 SIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILL 165

[Close]

BLAST of Csor.00g196970 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-30
Identity = 64/142 (45.07%), Postives = 93/142 (65.49%), Query Frame = 0


Query: 23  IDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVFGVRVARNGTVADLK 82
           ID R L+   L+  G +   RR  Y  LP    I L V+KL+GS+F V VA++ +VA+LK
Sbjct: 21  IDPRFLSSFALNDGGSISG-RRSSYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELK 80

Query: 83  QAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVVGIKDGDQLQFIRHM 142
           +A+E+VF       H  I+WS VWGHFCLCY  ++L++DK  IR +G+ DGDQL F+RH+
Sbjct: 81  RAVEQVFTISPLEGHGMISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFVRHL 140

Query: 143 SINCLPMKRDRKNQAVPCKTVL 165
           SI+  PM  ++++++  CK  L
Sbjct: 141 SIDHSPM--NKRSKSPSCKRYL 159

[Close]

BLAST of Csor.00g196970 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-24
Identity = 60/129 (46.51%), Postives = 79/129 (61.24%), Query Frame = 0


Query: 28  LAPLTLDGDGDVDALRRR---PYRLLPRLELIDLFVLKLDGSVFGVRVARNGTVADLKQA 87
           L+PL L     +D L RR    Y  +P  E I L VLKLDGS FG++V +  TV +LK A
Sbjct: 13  LSPLRL-----IDGLPRRRSFNYNQMPE-EPIKLTVLKLDGSSFGIQVLKTATVGELKMA 72

Query: 88  IEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVVGIKDGDQLQFIRHMSI 147
           +E  F     S   KI+W  VWG FCL YE ++LI++  Y+   GIKDGDQL+FIRH+S 
Sbjct: 73  VEAAFSHLPISGPGKISWPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIRHISN 132

Query: 148 NCLPMKRDR 154
            C+ M + +
Sbjct: 133 YCMLMVKHK 135

[Close]

BLAST of Csor.00g196970 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 97.8 bits (242), Expect = 8.5e-21
Identity = 53/104 (50.96%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 47  YRLLPRLELIDLFVLKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVW 106
           Y  LP  E I L VLKLDGS F V V  + TV DLK AIE  F         KI+WS VW
Sbjct: 11  YDKLPN-EPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKISWSHVW 70

Query: 107 GHFCLCYEGEKLIDDKAYIRVVGIKDGDQLQFIRHMSINCLPMK 151
           GHFCLC+ G+KLI D   I   G+KDGD+++F  H+S N +  K
Sbjct: 71  GHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAVLSK 113

[Close]

BLAST of Csor.00g196970 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 4.2e-20
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 0


Query: 54  ELIDLFVLKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCY 113
           E I L VLKLDGS F   V +  TV +LK A+E  F     S   KI+W  VWG FCL Y
Sbjct: 4   EPIKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPGKISWPHVWGQFCLSY 63

Query: 114 EGEKLIDDKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDR 154
           E ++LI++  Y+   GIKDGDQL+FIRH+S  C+ M + +
Sbjct: 64  EDKRLINESEYLTEFGIKDGDQLRFIRHISNYCMLMVKHK 100

[Close]

BLAST of Csor.00g196970 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-11
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 58  LFVLKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASE--HCKITWSLVWGHFCLCYEG 117
           L V+KLDGS   V V  + T+ DLK  I++  +    +   H  I+W  VW +FCL    
Sbjct: 54  LSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNN 113

Query: 118 EKLIDDKAYIRVVGIKDGDQLQFIRHM 143
           EKL+DD A ++ VGI++  Q+ F+ ++
Sbjct: 114 EKLLDDNAVLQDVGIRNNSQVTFMPYV 140

The following BLAST results are available for this feature:

BLAST of Csor.00g196970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	5.0e-10	37.93	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]
Q3ZBQ4	1.5e-09	39.08	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]
Q8VIK1	1.5e-09	39.08	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]
Q9BV90	5.6e-09	37.93	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]

BLAST of Csor.00g196970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606810.1	3.46e-121	100.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyr...	[more]
XP_022948349.1	1.97e-119	100.00	uncharacterized protein LOC111452053 [Cucurbita moschata] >KAG7036517.1 U11/U12 ...	[more]
XP_023525469.1	2.80e-119	99.39	uncharacterized protein LOC111789062 [Cucurbita pepo subsp. pepo]	[more]
XP_022998358.1	3.26e-118	99.39	uncharacterized protein LOC111493024 [Cucurbita maxima]	[more]
XP_022153473.1	2.61e-100	86.06	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Momordica cha...	[more]

BLAST of Csor.00g196970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9M5	9.53e-120	100.00	uncharacterized protein LOC111452053 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]
A0A6J1KGI2	1.58e-118	99.39	uncharacterized protein LOC111493024 OS=Cucurbita maxima OX=3661 GN=LOC111493024...	[more]
A0A6J1DHJ6	1.26e-100	86.06	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Momordica c...	[more]
A0A6J1DGY1	6.76e-99	85.98	uncharacterized protein LOC111020973 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A1S3BYS1	4.22e-91	81.53	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Cucumis mel...	[more]

BLAST of Csor.00g196970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80060.1	1.5e-30	45.07	Ubiquitin-like superfamily protein	[more]
AT4G32270.1	1.7e-24	46.51	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	8.5e-21	50.96	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	4.2e-20	49.00	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	3.6e-11	37.93	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 57..142 e-value: 3.7E-24 score: 84.6
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 56..141 e-value: 5.79973E-33 score: 110.686
None	No IPR available	GENE3D	3.10.20.90		coord: 53..150 e-value: 3.3E-32 score: 112.3
None	No IPR available	PANTHER	PTHR14942:SF9	OS02G0188500 PROTEIN	coord: 22..162
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 22..162
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 56..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g196970.m01	Csor.00g196970.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016020	membrane
cellular_component	GO:0005689	U12-type spliceosomal complex