Csor.00g196830 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g196830
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionRibonuclease 3-like protein 1
LocationCsor_Chr01: 769708 .. 770205 (+)
RNA-Seq ExpressionCsor.00g196830
SyntenyCsor.00g196830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTGCCTTCTCAAGCTGGCTGTGCAGCTATGGCGCCAAGTCTAAGCTCGTTAGAATCGTCCATCCCGGCGGTCACATAGAGCTCCACGACGGTCCCATCCGGGCGGCGGAGATCATGCTCCGAAACCCAGAATTCTCCCTCACTCACTCCCAATCAGCTAATCATCCATGGGCCATCGTCTCGCCGGACACGACGCTCATGCTGGGCTGCAAATACTACCTCTTACCGGAAAACAGCGTGGGAAACCCCCAGAAGATGAAGGAAAATGGAGGGTTGGAATCGGATTGTTTGAATGGCGGAAAGTGTATGATGTGTTTTGTTCCAAAGGAGAAGGGCGAGAGAACTGTGAGGTGGGAAAGTGGTGATGATTTGAAGGGGAATGATAAGAGGGTATTTTTGCAAAATGGGAATATTAGAGGGTCTCCCAAGAGACCATTTGGGTCATCTGATAATTGGGAACCAAATTTGAATAGCATCTCTGAAGAATATTAG

mRNA sequence

ATGGCCTCTGCCTTCTCAAGCTGGCTGTGCAGCTATGGCGCCAAGTCTAAGCTCGTTAGAATCGTCCATCCCGGCGGTCACATAGAGCTCCACGACGGTCCCATCCGGGCGGCGGAGATCATGCTCCGAAACCCAGAATTCTCCCTCACTCACTCCCAATCAGCTAATCATCCATGGGCCATCGTCTCGCCGGACACGACGCTCATGCTGGGCTGCAAATACTACCTCTTACCGGAAAACAGCGTGGGAAACCCCCAGAAGATGAAGGAAAATGGAGGGTTGGAATCGGATTGTTTGAATGGCGGAAAGTGTATGATGTGTTTTGTTCCAAAGGAGAAGGGCGAGAGAACTGTGAGGTGGGAAAGTGGTGATGATTTGAAGGGGAATGATAAGAGGGTATTTTTGCAAAATGGGAATATTAGAGGGTCTCCCAAGAGACCATTTGGGTCATCTGATAATTGGGAACCAAATTTGAATAGCATCTCTGAAGAATATTAG

Coding sequence (CDS)

ATGGCCTCTGCCTTCTCAAGCTGGCTGTGCAGCTATGGCGCCAAGTCTAAGCTCGTTAGAATCGTCCATCCCGGCGGTCACATAGAGCTCCACGACGGTCCCATCCGGGCGGCGGAGATCATGCTCCGAAACCCAGAATTCTCCCTCACTCACTCCCAATCAGCTAATCATCCATGGGCCATCGTCTCGCCGGACACGACGCTCATGCTGGGCTGCAAATACTACCTCTTACCGGAAAACAGCGTGGGAAACCCCCAGAAGATGAAGGAAAATGGAGGGTTGGAATCGGATTGTTTGAATGGCGGAAAGTGTATGATGTGTTTTGTTCCAAAGGAGAAGGGCGAGAGAACTGTGAGGTGGGAAAGTGGTGATGATTTGAAGGGGAATGATAAGAGGGTATTTTTGCAAAATGGGAATATTAGAGGGTCTCCCAAGAGACCATTTGGGTCATCTGATAATTGGGAACCAAATTTGAATAGCATCTCTGAAGAATATTAG

Protein sequence

MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWAIVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRWESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY
Homology
[Close]
BLAST of Csor.00g196830 vs. NCBI nr
Match: XP_022948495.1 (uncharacterized protein LOC111452155 isoform X2 [Cucurbita moschata] >KAG6606824.1 hypothetical protein SDJN03_00166, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 353 bits (907), Expect = 2.53e-123
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA 60
           MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA
Sbjct: 1   MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA 60

Query: 61  IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW 120
           IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW
Sbjct: 61  IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW 120

Query: 121 ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 165
           ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY
Sbjct: 121 ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 165

[Close]
BLAST of Csor.00g196830 vs. NCBI nr
Match: XP_022948492.1 (uncharacterized protein LOC111452155 isoform X1 [Cucurbita moschata] >XP_022948493.1 uncharacterized protein LOC111452155 isoform X1 [Cucurbita moschata] >XP_022948494.1 uncharacterized protein LOC111452155 isoform X1 [Cucurbita moschata])

HSP 1 Score: 353 bits (907), Expect = 1.11e-122
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA 60
           MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA
Sbjct: 43  MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA 102

Query: 61  IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW 120
           IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW
Sbjct: 103 IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW 162

Query: 121 ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 165
           ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY
Sbjct: 163 ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 207

[Close]
BLAST of Csor.00g196830 vs. NCBI nr
Match: XP_023523994.1 (uncharacterized protein LOC111788070 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023523995.1 uncharacterized protein LOC111788070 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 352 bits (903), Expect = 4.53e-122
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA 60
           MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA
Sbjct: 43  MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA 102

Query: 61  IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW 120
           IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGER+VRW
Sbjct: 103 IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERSVRW 162

Query: 121 ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 165
           ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY
Sbjct: 163 ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 207

[Close]
BLAST of Csor.00g196830 vs. NCBI nr
Match: XP_023523993.1 (uncharacterized protein LOC111788070 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 352 bits (903), Expect = 6.45e-122
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA 60
           MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA
Sbjct: 53  MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA 112

Query: 61  IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW 120
           IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGER+VRW
Sbjct: 113 IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERSVRW 172

Query: 121 ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 165
           ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY
Sbjct: 173 ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 217

[Close]
BLAST of Csor.00g196830 vs. NCBI nr
Match: XP_022998312.1 (uncharacterized protein LOC111492985 isoform X2 [Cucurbita maxima])

HSP 1 Score: 327 bits (837), Expect = 1.24e-112
Identity = 156/166 (93.98%), Postives = 158/166 (95.18%), Query Frame = 0 

Query: 1   MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA 60
           M+SAFSSWLCSYGAKSKLVRIVHP GHIELHD PI AAEIMLRNPEFSLTHSQSANHPWA
Sbjct: 1   MSSAFSSWLCSYGAKSKLVRIVHPSGHIELHDSPIWAAEIMLRNPEFSLTHSQSANHPWA 60

Query: 61  IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW 120
           IVSPDTTLML CKY LLPENSVGNPQKMKEN GLESDCLN GKCMMCFVPKEKGERTVRW
Sbjct: 61  IVSPDTTLMLCCKYDLLPENSVGNPQKMKENEGLESDCLNDGKCMMCFVPKEKGERTVRW 120

Query: 121 ESGDDLKGNDKR-VFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 165
           ESGDDLKGNDKR +FLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY
Sbjct: 121 ESGDDLKGNDKRGIFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 166

[Close]
BLAST of Csor.00g196830 vs. ExPASy TrEMBL
Match: A0A6J1GA04 (uncharacterized protein LOC111452155 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452155 PE=4 SV=1)

HSP 1 Score: 353 bits (907), Expect = 1.22e-123
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA 60
           MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA
Sbjct: 1   MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA 60

Query: 61  IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW 120
           IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW
Sbjct: 61  IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW 120

Query: 121 ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 165
           ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY
Sbjct: 121 ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 165

[Close]
BLAST of Csor.00g196830 vs. ExPASy TrEMBL
Match: A0A6J1G9G0 (uncharacterized protein LOC111452155 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452155 PE=4 SV=1)

HSP 1 Score: 353 bits (907), Expect = 5.39e-123
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA 60
           MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA
Sbjct: 43  MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA 102

Query: 61  IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW 120
           IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW
Sbjct: 103 IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW 162

Query: 121 ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 165
           ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY
Sbjct: 163 ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 207

[Close]
BLAST of Csor.00g196830 vs. ExPASy TrEMBL
Match: A0A6J1K7L4 (uncharacterized protein LOC111492985 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492985 PE=4 SV=1)

HSP 1 Score: 327 bits (837), Expect = 6.03e-113
Identity = 156/166 (93.98%), Postives = 158/166 (95.18%), Query Frame = 0 

Query: 1   MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA 60
           M+SAFSSWLCSYGAKSKLVRIVHP GHIELHD PI AAEIMLRNPEFSLTHSQSANHPWA
Sbjct: 1   MSSAFSSWLCSYGAKSKLVRIVHPSGHIELHDSPIWAAEIMLRNPEFSLTHSQSANHPWA 60

Query: 61  IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW 120
           IVSPDTTLML CKY LLPENSVGNPQKMKEN GLESDCLN GKCMMCFVPKEKGERTVRW
Sbjct: 61  IVSPDTTLMLCCKYDLLPENSVGNPQKMKENEGLESDCLNDGKCMMCFVPKEKGERTVRW 120

Query: 121 ESGDDLKGNDKR-VFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 165
           ESGDDLKGNDKR +FLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY
Sbjct: 121 ESGDDLKGNDKRGIFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 166

[Close]
BLAST of Csor.00g196830 vs. ExPASy TrEMBL
Match: A0A6J1K9X0 (uncharacterized protein LOC111492985 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492985 PE=4 SV=1)

HSP 1 Score: 327 bits (837), Expect = 2.62e-112
Identity = 156/166 (93.98%), Postives = 158/166 (95.18%), Query Frame = 0 

Query: 1   MASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWA 60
           M+SAFSSWLCSYGAKSKLVRIVHP GHIELHD PI AAEIMLRNPEFSLTHSQSANHPWA
Sbjct: 43  MSSAFSSWLCSYGAKSKLVRIVHPSGHIELHDSPIWAAEIMLRNPEFSLTHSQSANHPWA 102

Query: 61  IVSPDTTLMLGCKYYLLPENSVGNPQKMKENGGLESDCLNGGKCMMCFVPKEKGERTVRW 120
           IVSPDTTLML CKY LLPENSVGNPQKMKEN GLESDCLN GKCMMCFVPKEKGERTVRW
Sbjct: 103 IVSPDTTLMLCCKYDLLPENSVGNPQKMKENEGLESDCLNDGKCMMCFVPKEKGERTVRW 162

Query: 121 ESGDDLKGNDKR-VFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 165
           ESGDDLKGNDKR +FLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY
Sbjct: 163 ESGDDLKGNDKRGIFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 208

[Close]
BLAST of Csor.00g196830 vs. ExPASy TrEMBL
Match: A0A5B7ALW7 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_025902 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 9.06e-32
Identity = 74/193 (38.34%), Postives = 102/193 (52.85%), Query Frame = 0 

Query: 4   AFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWAIVS 63
           A SSWLC+   K+ LV+IVHPGGH+ELHD P+ AAEIMLRNP   + H      PWAIV+
Sbjct: 1   ALSSWLCTNSTKNMLVKIVHPGGHVELHDRPVLAAEIMLRNPRCCVAHPHVFRQPWAIVA 60

Query: 64  PDTTLMLGCKYYLLPENSVGNPQKM------------------KENGGLESDCLNGGK-- 123
           PDTTLMLG K+Y++P +++   Q++                  K++G L S CL   K  
Sbjct: 61  PDTTLMLGQKFYVVPISTIRKLQRLSLKNSPSLVQETQTSQSCKDDGPL-SCCLFKNKSP 120

Query: 124 ---CMMCFVP---------KEKGERTVRWESGDDLKGNDKRVFLQNGNIRGSPKRPFGSS 164
              C+ C             E   +  R  S     G+ +    ++  +R SP+R   S 
Sbjct: 121 KDNCLACLFTGMKIKAANSTEDPSKEARSSSTSSSIGSSETTRPED--VR-SPRRSLSSF 180

[Close]
BLAST of Csor.00g196830 vs. TAIR 10
Match: AT2G30230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06980.1); Has 167 Blast hits to 167 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 2.4e-07
Identity = 45/164 (27.44%), Postives = 71/164 (43.29%), Query Frame = 0 

Query: 18  LVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTH--SQSANHPWAIVSPDTTLMLGCKYY 77
           L+RIVH  GH++    P+ A EI+  NP   L+   SQ       I+SP++ L  G  Y+
Sbjct: 20  LIRIVHLNGHVDEITSPMTAGEILQANPNHVLSKPCSQGVVRKILILSPESELKRGSIYF 79

Query: 78  LLPENSVGNPQKMK------------ENGG-LESDCLNGGKCM--MCFVPKEKGERTVRW 137
           L+P+ S+   +K K            E+G  + SD ++  K +   C    EK    V  
Sbjct: 80  LIPDTSMPEKKKTKKRKELRCRKKPLESGNDINSDHVSTNKDLDGHCLTLCEKYLEDVML 139

Query: 138 ESGDDLKGNDKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEE 165
                  G + R   ++            S   W P+L+SI+E+
Sbjct: 140 SEKMSSAGKENRHRRKHSR--------SASVSTWRPHLDSITED 175

[Close]
BLAST of Csor.00g196830 vs. TAIR 10
Match: AT1G06980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-05
Identity = 25/76 (32.89%), Postives = 43/76 (56.58%), Query Frame = 0 

Query: 18 LVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTH--SQSANHPWAIVSPDTTLMLGCKYY 77
          L+RIVH  G++E     I A EI+  NP   L+   SQ       I+SP++ L  G  Y+
Sbjct: 20 LIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCSQGVVRKILILSPESELKRGSIYF 79

Query: 78 LLPENSVGNPQKMKEN 92
          L+P++S+   ++ +++
Sbjct: 80 LIPDSSLPEKKRRRKD 95

[Close]
BLAST of Csor.00g196830 vs. TAIR 10
Match: AT1G29195.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 7.2e-04
Identity = 25/72 (34.72%), Postives = 37/72 (51.39%), Query Frame = 0 

Query: 18 LVRIVHPGGHIELHDGPIRAAEIMLRNPEFSL--THSQSANH---------PWAIVSPDT 77
          ++RIVH  GH+E   G I A+EIM  +P+  L    S +++H            IV P+ 
Sbjct: 20 VIRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPPEA 79

Query: 78 TLMLGCKYYLLP 79
           L  G  Y+L+P
Sbjct: 80 ELQRGKIYFLMP 91

The following BLAST results are available for this feature:
BLAST of Csor.00g196830 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g196830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022948495.12.53e-123100.00uncharacterized protein LOC111452155 isoform X2 [Cucurbita moschata] >KAG6606824... [more]
XP_022948492.11.11e-122100.00uncharacterized protein LOC111452155 isoform X1 [Cucurbita moschata] >XP_0229484... [more]
XP_023523994.14.53e-12299.39uncharacterized protein LOC111788070 isoform X2 [Cucurbita pepo subsp. pepo] >XP... [more]
XP_023523993.16.45e-12299.39uncharacterized protein LOC111788070 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022998312.11.24e-11293.98uncharacterized protein LOC111492985 isoform X2 [Cucurbita maxima][more]
BLAST of Csor.00g196830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GA041.22e-123100.00uncharacterized protein LOC111452155 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1G9G05.39e-123100.00uncharacterized protein LOC111452155 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1K7L46.03e-11393.98uncharacterized protein LOC111492985 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1K9X02.62e-11293.98uncharacterized protein LOC111492985 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A5B7ALW79.06e-3238.34Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_025902... [more]
BLAST of Csor.00g196830 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G30230.12.4e-0727.44unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G06980.11.3e-0532.89unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G29195.17.2e-0434.72unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025322Protein of unknown function DUF4228, plantPFAMPF14009DUF4228coord: 12..163
e-value: 4.2E-20
score: 72.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..165
NoneNo IPR availablePANTHERPTHR33052:SF24OS06G0568400 PROTEINcoord: 4..92
NoneNo IPR availablePANTHERPTHR33052DUF4228 DOMAIN PROTEIN-RELATEDcoord: 4..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g196830.m01Csor.00g196830.m01mRNA