Csor.00g196350 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g196350
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Sm domain-containing protein
Location	Csor_Chr01: 1013845 .. 1017027 (+)
RNA-Seq Expression	Csor.00g196350
Synteny	Csor.00g196350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGATTTCTGATGGATTGGTTCAATTAGAATATATGTGATTGTTGATTACGATGTATAATGTGGTATTCGTTTTGTCTGTTTATCAGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTCGTGGACAAAGGCGTCCAAGTCAAGCTCACTGGCGGCAGACAAGGTTGTTTATTTTTAATACCTTCATTGTATTACTGCCACTCGGATACGATTCGTTACATTCTGATTTGTTTTTCTTTTTATTCATACATAAGTTTAAGTGTTCGTTTGGTGAAAAAAAAAAAAAAAAAAAAAGTTCATGTGTTACGATCAAGAGGTTCAGGCAGATAGTTGAATGTTTGATGTCGAGTGTTTTTTTTTTGTTCGTTCTTCCTGTTTCTAAATGCAAGAAGAGTGCTTTATGAATCTTATTTTCCATTGATAGTTACGGGAACGCTTAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGGTAACCAATTTACTGGATACTGGCTGAATGGATGAGATTTGTGATGTTTTGTAGTGCATAGACTTAAAGTTGGCCGAGTTATTGATTAGTAGCTTTCATACAATTTTTTTATTTGTTGAGAGGTATAATGTGATGCGATGAACTCTTAAGACCGACACTCTCTATCATCTGTTGGACTTGAAAAATAATTTTGAAATTTATTTTTGTTGGTCTTTTTGGCATTCTAACACATGCTGTTGATGCACATAGGCACATTGATAGTGATAAAAACAAAACGTAATTCCAGAAAAATTAAAATAATCATTGAAAAATGAGACTGAAAATCCTTTCATATTGGGCCAAAGTAAGCATAGATCAATGCTAATTGCCATGTATTTCTTCCTTTGAGGTTAGAGATTCAAATCCTCATGCCCCATATTTTTTGTAACTTGTACTAAAAAAATTCATTTCATATTGGACAAAGATGCACAAATTAAGAATTTAAATTATAAGTAACATAACAAATTAACGATTTTTCTGCAAGAACAGAAAAAGGTTTCTTTTCTGTTGATTTAGCTGATTAAGATGTGGCAGTGTAGTTAATAATGTTTCGTTTGAAGTATGGCTTTTGTTATACATGCTGTCCTTGAGCCTATTTTCAATGGATATGTTTGTTTTTTTCAAAAGAAAATAGACATGTCATTGATATGATGAAACATATAAATCATCAATTTGCATTATTATTATCTTTTGTCACAATATTTGAAAAACCCCCTTTTGTCTTTCTATTGTTACTTGTAATTGGATGGTTAATCAATTTATAGGCATAAATGAAATTCTGAATGAAAATTTATGCATGTGCAATACATGCTATGATAAGTAATCGAATTCATACAAAAGGCGGGGACAAAAGAGGAAGATAAGCAACCTCATCTTCCAATAGGCCAATAAGGTTAGGGTATTTAGATGGAATGAGTCTCGAAGCTTGTCTTGGTAATCTTTCTGTGTCTCTCCTTCCTTAGCTCCCCACAAAAAAGCATTGTTGGGTTTGAACAGTTATATCCTAGTTGACATGCTTGCAGAGACCATTGGCACAAGACCTGATTATTTGTTATGGAAGCACCATTGAAGGTCGGAAACTTCCATAGCTTATTCCAGAACGTAATAGGTGGGAAATGCTTTTAGTCCTAATTTCCCTTGTAAAAAATGCACCATTTAGGAGACTATACTTTATTAGGGAGTTTCTTCTGAATTCTATCCACGGTGTTGGTATGCTCTTGCACCAAGATTCAAAGAACAAACTAGACCATCTTTGTAGCCCTAGCGTTCCAAATAGCCTGGGAGAGGTATTTCTTAACATTCTAGGATGTGTAAAGAAATCATATAATGGTAGTAAAAGATTCATTCAGGAAGTGGTAAATGAATTCATGGACTTTCATCTGGGTTTGCACCTCCGTTTGCTGTCTCATTCACCAAGCATGAACTTACAAATTAGATCAAGAAACACAAGCATGGAAATGCAATATAGTCCTGACTCTGGGACACTGTTTTTATTGGCATCATAGTTCCTATTTATTACACATACTTACAACGTTCAGAGGATCTTTCCCCGGGGCAAGTTTTTTTTTTTGTGCTCCTCAATTCAGTTGCTTTTATTGGTGGTTATGTGCTTCTATTGTTTTGATTTTTATCTTTTCCACCATTTTCTTTATTCCCAAAGTCTCTTCTACTGACTGGCTAGTTAGTTATGTTTATATCTTTTGTTTTTATAATGGCCTTTTACCTTCTGTTCAGTACGAACCTTAAGTTAAAATATTGTCCTTATACCTGTTCCTGCTATGCTTTTGACGGCGCTGCAGAATATATCTGATATATTGACTAAAGTTTTTTTTTTTTCTTTCTTTTCTGCAGATTCCGATGATCCATTGAAGACAACAGATCAAACCAGGCGCCTTGGCCTAATTGTATAATTCTTTCTCCTTGGATACAATGAAAAATTTTATCAAATTTTTAGCACAGAATTTTATTGTTTACGCATGCGACTAAGGACTTCATTTTGACAATTGCAATTGTCTGTGCGCTAAACAGATTAAATGGTCTCAATTGACGTGAAAATTTCAGAGTTTTTATCTGTTTTTAAATAATCCTTTCTTTTAACAAGAAAAAAAGAAGGCATCATAATTTACTTTTGTTTGAAAACTTCTCCTTTATGGACTGGACGAAATACTGTGTGCTCCGGCTGAGCATGTTTCTATCCTTTGAATACTTGTATTTTTCTTATCTGCTATCACATGCGCCATGTTAAACTGACTTGCGAACTTTTTATACTACTGATTCACTCTGAATTTCTTATGTGCTTAACGCTCTCTTACCATCCTTTTTTTTTTTTTTTTTTTTTTTTGCAATTTTAGTGGTTAGGGCATGGTTAACTATTTCTTGTGATAATTTAAATTATTTTATCACGAGGAAAAAGTGAAAGCTTGGCTCTTCTTAAGCGTGCATGTGTAAAAGGAGAAAGGAAATGCTCTAAATGGCGTGCTTCTTTGTTCATAGTTTCTTTTCTTTAGTAACGAGCCCGAGTGATCAATTTGCATACTATTCACTGCAGGTTTGCAGGGGGACTGCTGTAATGCTTGTGTCACCAGTTGATGGTACAGATGAGATTGCAAACCCCTTTATCCAACCGGATGGTGCATAG

mRNA sequence

ATGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTCGTGGACAAAGGCGTCCAAGTCAAGCTCACTGGCGGCAGACAAGTTACGGGAACGCTTAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGATTCCGATGATCCATTGAAGACAACAGATCAAACCAGGCGCCTTGGCCTAATTGTTTGCAGGGGGACTGCTGTAATGCTTGTGTCACCAGTTGATGGTACAGATGAGATTGCAAACCCCTTTATCCAACCGGATGGTGCATAG

Coding sequence (CDS)

ATGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTCGTGGACAAAGGCGTCCAAGTCAAGCTCACTGGCGGCAGACAAGTTACGGGAACGCTTAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGATTCCGATGATCCATTGAAGACAACAGATCAAACCAGGCGCCTTGGCCTAATTGTTTGCAGGGGGACTGCTGTAATGCTTGTGTCACCAGTTGATGGTACAGATGAGATTGCAAACCCCTTTATCCAACCGGATGGTGCATAG

Protein sequence

MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

Homology

[Close]

BLAST of Csor.00g196350 vs. ExPASy Swiss-Prot
Match: Q9SI54 (Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.2e-45
Identity = 89/94 (94.68%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]

BLAST of Csor.00g196350 vs. ExPASy Swiss-Prot
Match: Q9UK45 (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens OX=9606 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 9.4e-28
Identity = 54/96 (56.25%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 4   RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKTTDQ 63
           +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RD DD  K T+ 
Sbjct: 8   KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67

Query: 64  TRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TR+LGL+VCRGT+V+L+ P DG + I NPFIQ   A
Sbjct: 68  TRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103

[Close]

BLAST of Csor.00g196350 vs. ExPASy Swiss-Prot
Match: Q9CQQ8 (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus OX=10090 GN=Lsm7 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.7e-27
Identity = 52/92 (56.52%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 4  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKTTDQ 63
          +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RD DD  K T+ 
Sbjct: 8  KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTED 67

Query: 64 TRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQ 96
          TR+LGL+VCRGT+V+L+ P DG + I NPF+Q
Sbjct: 68 TRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQ 99

[Close]

BLAST of Csor.00g196350 vs. ExPASy Swiss-Prot
Match: Q54HF6 (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum OX=44689 GN=lsm7 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.9e-26
Identity = 52/90 (57.78%), Postives = 72/90 (80.00%), Query Frame = 0


Query: 4  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKTTDQ 63
          +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RD++DPL TTD+
Sbjct: 8  KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDE 67

Query: 64 TRRLGLIVCRGTAVMLVSPVDGTDEIANPF 94
           R LGL+VCRG++VM+V P +G + I NP+
Sbjct: 68 KRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97

[Close]

BLAST of Csor.00g196350 vs. ExPASy Swiss-Prot
Match: O74499 (U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lsm7 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.3e-24
Identity = 50/94 (53.19%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 4   RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKTTDQ 63
           RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+ +D  K T  
Sbjct: 21  RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG-KLTGA 80

Query: 64  TRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
            R+LGL+V RGT ++L++P+DG++EI NPF+Q +
Sbjct: 81  IRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113

[Close]

BLAST of Csor.00g196350 vs. NCBI nr
Match: XP_022948303.1 (sm-like protein LSM7 [Cucurbita moschata] >XP_022948305.1 sm-like protein LSM7 [Cucurbita moschata] >XP_022998506.1 sm-like protein LSM7 [Cucurbita maxima] >XP_022998508.1 sm-like protein LSM7 [Cucurbita maxima] >XP_023525746.1 sm-like protein LSM7 [Cucurbita pepo subsp. pepo] >XP_023525747.1 sm-like protein LSM7 [Cucurbita pepo subsp. pepo] >KAG6606872.1 Sm-like protein LSM7, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036578.1 Sm-like protein LSM7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198 bits (504), Expect = 5.45e-64
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]

BLAST of Csor.00g196350 vs. NCBI nr
Match: XP_022934168.1 (sm-like protein LSM7 [Cucurbita moschata] >XP_023526539.1 sm-like protein LSM7 [Cucurbita pepo subsp. pepo] >KAG6581586.1 Sm-like protein LSM7, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018089.1 Sm-like protein LSM7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198 bits (503), Expect = 7.74e-64
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]

BLAST of Csor.00g196350 vs. NCBI nr
Match: XP_022983896.1 (sm-like protein LSM7 [Cucurbita maxima])

HSP 1 Score: 196 bits (499), Expect = 3.16e-63
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE +EFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]

BLAST of Csor.00g196350 vs. NCBI nr
Match: XP_020260133.1 (sm-like protein LSM7 isoform X2 [Asparagus officinalis] >ONK81825.1 uncharacterized protein A4U43_C01F33250 [Asparagus officinalis])

HSP 1 Score: 196 bits (498), Expect = 4.48e-63
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPF+QPDGA
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFLQPDGA 99

[Close]

BLAST of Csor.00g196350 vs. NCBI nr
Match: XP_022152570.1 (sm-like protein LSM7 [Momordica charantia] >XP_022152571.1 sm-like protein LSM7 [Momordica charantia])

HSP 1 Score: 196 bits (498), Expect = 4.78e-63
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]

BLAST of Csor.00g196350 vs. ExPASy TrEMBL
Match: A0A6J1KGY2 (sm-like protein LSM7 OS=Cucurbita maxima OX=3661 GN=LOC111493122 PE=3 SV=1)

HSP 1 Score: 198 bits (504), Expect = 2.64e-64
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]

BLAST of Csor.00g196350 vs. ExPASy TrEMBL
Match: A0A6J1G9G2 (sm-like protein LSM7 OS=Cucurbita moschata OX=3662 GN=LOC111452019 PE=3 SV=1)

HSP 1 Score: 198 bits (504), Expect = 2.64e-64
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]

BLAST of Csor.00g196350 vs. ExPASy TrEMBL
Match: A0A6J1F6X2 (sm-like protein LSM7 OS=Cucurbita moschata OX=3662 GN=LOC111441416 PE=3 SV=1)

HSP 1 Score: 198 bits (503), Expect = 3.75e-64
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]

BLAST of Csor.00g196350 vs. ExPASy TrEMBL
Match: A0A6J1J3M9 (sm-like protein LSM7 OS=Cucurbita maxima OX=3661 GN=LOC111482381 PE=3 SV=1)

HSP 1 Score: 196 bits (499), Expect = 1.53e-63
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE +EFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]

BLAST of Csor.00g196350 vs. ExPASy TrEMBL
Match: A0A5P1FU12 (Sm domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F33250 PE=3 SV=1)

HSP 1 Score: 196 bits (498), Expect = 2.17e-63
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99
          TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPF+QPDGA
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFLQPDGA 99

[Close]

BLAST of Csor.00g196350 vs. TAIR 10
Match: AT2G03870.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 182.6 bits (462), Expect = 1.6e-46
Identity = 89/94 (94.68%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]

BLAST of Csor.00g196350 vs. TAIR 10
Match: AT2G03870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 182.6 bits (462), Expect = 1.6e-46
Identity = 89/94 (94.68%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]

BLAST of Csor.00g196350 vs. TAIR 10
Match: AT2G23930.1 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 60.8 bits (146), Expect = 6.9e-10
Identity = 30/75 (40.00%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKTTDQTRRLGL 69
          DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  VE        +   D+T  +G+
Sbjct: 9  DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGM 68

Query: 70 IVCRGTAVMLVSPVD 85
          +V RG +++ V  ++
Sbjct: 69 VVIRGNSIVTVEALE 74

[Close]

BLAST of Csor.00g196350 vs. TAIR 10
Match: AT3G11500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-09
Identity = 31/75 (41.33%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKTTDQTRRLGL 69
          DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE   + DD    TD    +G+
Sbjct: 9  DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV--NGDD---KTD----IGM 68

Query: 70 IVCRGTAVMLVSPVD 85
          +V RG +++ V  ++
Sbjct: 69 VVIRGNSIVTVEALE 74

[Close]

BLAST of Csor.00g196350 vs. TAIR 10
Match: AT2G23930.2 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 53.9 bits (128), Expect = 8.4e-08
Identity = 27/70 (38.57%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 15 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKTTDQTRRLGLIVCRG 74
          +DK +Q+KL   R VTGTL+G+DQ +NLV+D  VE        +   D+T  +G++V RG
Sbjct: 1  MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGMVVIRG 60

Query: 75 TAVMLVSPVD 85
           +++ V  ++
Sbjct: 61 NSIVTVEALE 61

The following BLAST results are available for this feature:

BLAST of Csor.00g196350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI54	2.2e-45	94.68	Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1	[more]
Q9UK45	9.4e-28	56.25	U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens OX=9606 GN=LSM7 PE=1 SV...	[more]
Q9CQQ8	2.7e-27	56.52	U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus OX=10090 GN=Lsm7 PE=1 S...	[more]
Q54HF6	3.9e-26	57.78	Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum OX...	[more]
O74499	6.3e-24	53.19	U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 97...	[more]

BLAST of Csor.00g196350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948303.1	5.45e-64	100.00	sm-like protein LSM7 [Cucurbita moschata] >XP_022948305.1 sm-like protein LSM7 [...	[more]
XP_022934168.1	7.74e-64	98.99	sm-like protein LSM7 [Cucurbita moschata] >XP_023526539.1 sm-like protein LSM7 [...	[more]
XP_022983896.1	3.16e-63	97.98	sm-like protein LSM7 [Cucurbita maxima]	[more]
XP_020260133.1	4.48e-63	97.98	sm-like protein LSM7 isoform X2 [Asparagus officinalis] >ONK81825.1 uncharacteri...	[more]
XP_022152570.1	4.78e-63	97.98	sm-like protein LSM7 [Momordica charantia] >XP_022152571.1 sm-like protein LSM7 ...	[more]

BLAST of Csor.00g196350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KGY2	2.64e-64	100.00	sm-like protein LSM7 OS=Cucurbita maxima OX=3661 GN=LOC111493122 PE=3 SV=1	[more]
A0A6J1G9G2	2.64e-64	100.00	sm-like protein LSM7 OS=Cucurbita moschata OX=3662 GN=LOC111452019 PE=3 SV=1	[more]
A0A6J1F6X2	3.75e-64	98.99	sm-like protein LSM7 OS=Cucurbita moschata OX=3662 GN=LOC111441416 PE=3 SV=1	[more]
A0A6J1J3M9	1.53e-63	97.98	sm-like protein LSM7 OS=Cucurbita maxima OX=3661 GN=LOC111482381 PE=3 SV=1	[more]
A0A5P1FU12	2.17e-63	97.98	Sm domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F33250...	[more]

BLAST of Csor.00g196350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03870.2	1.6e-46	94.68	Small nuclear ribonucleoprotein family protein	[more]
AT2G03870.1	1.6e-46	94.68	Small nuclear ribonucleoprotein family protein	[more]
AT2G23930.1	6.9e-10	40.00	probable small nuclear ribonucleoprotein G	[more]
AT3G11500.1	1.5e-09	41.33	Small nuclear ribonucleoprotein family protein	[more]
AT2G23930.2	8.4e-08	38.57	probable small nuclear ribonucleoprotein G	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 9..82 e-value: 1.2E-23 score: 94.6
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 10..82 e-value: 1.9E-20 score: 72.3
None	No IPR available	PIRSF	PIRSF037188	Lsm7	coord: 1..98 e-value: 1.6E-44 score: 148.4
None	No IPR available	GENE3D	2.30.30.100		coord: 1..92 e-value: 1.7E-32 score: 113.5
None	No IPR available	PANTHER	PTHR10553:SF30	BNAA06G33630D PROTEIN	coord: 3..97
IPR044641	Sm-like protein Lsm7/SmG	PANTHER	PTHR10553	SMALL NUCLEAR RIBONUCLEOPROTEIN	coord: 3..97
IPR017132	Sm-like protein Lsm7	CDD	cd01729	LSm7	coord: 5..93 e-value: 2.94379E-57 score: 169.304
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 11..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g196350.m01	Csor.00g196350.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0120115	Lsm2-8 complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0071004	U2-type prespliceosome
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding