Csor.00g196160 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGAGGCTTCGGATTTTGATTTGGATTCGGAAATGGGTCTCTCTATCCATGGAATGTGGAGATGATAAGAAGTGGAAATGGTCACAACACATTTGTTTGGATTGCTACAAATTTTGTGGTCATCAATTTTCCCCTTAATAAATATTATTTAAATATTGTTGTCTAAATAAAATTTTATTTGTGGATAAATTTATTGTCTTATTTATTTATTATATTTAAATTTTTAAATATAAAAAATAATACATATTTTAAAAAAATAGGATAATACCTAATTTTTATTTGAATATAAATTGTGGTGGAAATATAAATTTTAGTCCACATTCTAGTGGGTTCCTCCTTAAATTATTTTATTTTATTTTATTTTATTTTATTTTAGGGGAAAAAATACAAATAGAAGTCTATTTCTCTCAATATCACTTTGAATAATTTTAGTAAATAAAAATCAATTAAAAAACATATTTTAATGCATTATTGTTGGTTTATTTAGCATTGGAATTTCTTAAATTTAATAAAATCTTTATTTTGTGACAAGACAGGTGTACGACAACTAGTGGTGCATATCGAATCGAATATACACGTGTGTGGCCTAAATATCTCGAAGGTGACGTGGATTGCTGTCGTGTCGTGTCAACCTTTTATTTTTCTTTTACATTTTTAGTAATTTTAGAATGGCCAAATTATAAAATATTACATTCAAATATTCGCCTTTGCCAGATTTCAAGTTTGTGGGCTAGAGATTTGGGCTTGACTTTGGGCTGGGCTTGGTTGGTATGTGGGCCGGCCCAATTTGGGAAAATATTAAATTATATAAAATTAAATTATGTGACATTTTAGGATATCATTTTGCTTACATTTTATAAAATTAAATGGATTGAATATTTAAAATAAGCTTCGTTACGATTCATTTGATATCCATGTTGTTCGGTCCTTGATCATCAAAGATAATATTTCTCTTTTACCGTATTTTTTTGAATTTATATTTAAGTGTCATTATGTGAGATCCCACGTCCGTTGGAGAGAGAAACTAAGTATTCGGTGTGTGAAAATTTTTCCTTAGTTTACACCTTTTTAAAATTTTGAAGCTGATGATAATATGTAACGAGTCAAAGTAGACAATATCTATTAGCAAGGAACTTAACTGTTACAAAGGATAGACTTAAGTTGTTACAAATGGCATCAGAGAGAGCCAGACACTATGCAATGTGCCAGCAAGAACGTTGGTCCCCAGAATGAGTATATTGTGAGATTTCACATCAGTTGGGGAAGGGAACTAAGTATTCTTATAAAGGTGGGAAAATATAAATCGTGAGGCTGACGGTGATACGTAACGTGCCAAAGCAAACAACTGCTTGAGCTGTTACATGTTATGGGTGTATTGGAGGTTCGTAAAGCTAAAAGAAAATTGAAGGTCGGTTTAAAATGGAGTTAGTATCACTTTCGAAAGCTACTTTTATTCGCGAATTAAAAAAAAAAAAAGACTTCTCTTTTCAAAAGGATAAGAGCACCTATGTTATTAAAGTTGGTCGTTGTTATGGTTAGCTTCTTAATTAATTGTTTAATTTGTTAATAATAGTTAATACCATCCGTTATGTGAAATTTAATAAAATTCAGTGCATTAAAATCCACCGAATCTTTTATCGTTTAATCTGTTTATGTGAAATTTCTTAATTAATCTGTTTGAACTGAACACGTTGTTTGATCTTCCAATGTAAGCTTCCGATCGCAGAAAAATCTCTGTTCATATCCCGTTGATGCTTTCTTCCTCGTGACAGCTTCACAAGCTCACGCAAGATCGTTCCCACTTGGGCTGGCCCAGTTGCTCAATTTCTGTGAATTCCTAATTTAGATAACCCCATTTGACCGTTGATTCAGAATCACAAGCCCTCCAGATTTGATCGGCAAATCGCCTTTTAAAGTTCTTCCTTCGCTGATCAATTCAATCGCGGAGTTCTGTTCTTGATCTTTTGATGCTCATTTCTGTTCATCAATTGGCAGATTATTCTCCAAACTGGAAGATCATCACCACCACCGCCATCATGAATCGGAAGCGGCGTTATCGTTGGCGATTCAGGGATTTCTCTCTGCAATCTCGATTTCCTTGAGCGATTTGGGGTTTGATTCGAACAAATCCACATCCGAAATCATCTCATTTCCATGGATCAATCGGTGTTTCCAACTGCTTCGTATTCAACACAGAGCTTTTGCCAAGTTGATCGTAGAAATTGACTATCCAGTTCGCAAACACGAGGCTTCTTCAGGGGAGGGGTTTTTTCAATACACCTTGAGATTACTTGAGCTTTTGAATTCGATTAGCTCGTGTATAGCTGATCTGAGCCAAGCTCGGTTAAGGCTTTCTCATGCTTTAAGCTTAGTGGAATCTTCTCCTTCCTCTGCAATCGATCGTTTGAAGCCTATAGGAACGAGCAGTTTCAAGAACAGCTCGATCAAAGGCGAAATCGGAGAGATTTCTGTGGAAGTCAAGAATTCAGAGAAAGAATCCGTGGTTAATCGTGCTTTGACGATTATGAAACAGATCGGTTCATGGGTTTGCGGGCTTGTAATTTCTGGATTGAGCGGAGAAGTTGAAGTATTCATGGAGATGAGAAGATCAACAGGGAAATTAGGGGTTTCTGCTTTGGATCGATTGGATTTTACTGTTCATAAAGCAATCTGTGAATCTGGCGCGAGGTTGAAGGAAGTTCAAGAGGTGAATGATGCAGTTGAGCTTCTAGCTGCTTCCATGGCGGATCGGAAAAGAGCTGAGGATTTGCAGAAGAAACTAGCTGTTCTTGAGAAGGAGACAGATGATTTCAAGAAGGAAGTTGATTCTCTCTTCTCTGATGTTTTGGAAGAGAGAACCAAACTGCTTGATTCCCTGAGACGAACATATCAATAG ATGCAGAGGCTTCGGATTTTGATTTGGATTCGGAAATGGGTCTCTCTATCCATGGAATGTGGAGATGATAAGAAGTGGAAATTATTCTCCAAACTGGAAGATCATCACCACCACCGCCATCATGAATCGGAAGCGGCGTTATCGTTGGCGATTCAGGGATTTCTCTCTGCAATCTCGATTTCCTTGAGCGATTTGGGGTTTGATTCGAACAAATCCACATCCGAAATCATCTCATTTCCATGGATCAATCGGTGTTTCCAACTGCTTCGTATTCAACACAGAGCTTTTGCCAAGTTGATCGTAGAAATTGACTATCCAGTTCGCAAACACGAGGCTTCTTCAGGGGAGGGGTTTTTTCAATACACCTTGAGATTACTTGAGCTTTTGAATTCGATTAGCTCGTGTATAGCTGATCTGAGCCAAGCTCGGTTAAGGCTTTCTCATGCTTTAAGCTTAGTGGAATCTTCTCCTTCCTCTGCAATCGATCGTTTGAAGCCTATAGGAACGAGCAGTTTCAAGAACAGCTCGATCAAAGGCGAAATCGGAGAGATTTCTGTGGAAGTCAAGAATTCAGAGAAAGAATCCGTGGTTAATCGTGCTTTGACGATTATGAAACAGATCGGTTCATGGGTTTGCGGGCTTGTAATTTCTGGATTGAGCGGAGAAGTTGAAGTATTCATGGAGATGAGAAGATCAACAGGGAAATTAGGGGTTTCTGCTTTGGATCGATTGGATTTTACTGTTCATAAAGCAATCTGTGAATCTGGCGCGAGGTTGAAGGAAGTTCAAGAGGTGAATGATGCAGTTGAGCTTCTAGCTGCTTCCATGGCGGATCGGAAAAGAGCTGAGGATTTGCAGAAGAAACTAGCTGTTCTTGAGAAGGAGACAGATGATTTCAAGAAGGAAGTTGATTCTCTCTTCTCTGATGTTTTGGAAGAGAGAACCAAACTGCTTGATTCCCTGAGACGAACATATCAATAG ATGCAGAGGCTTCGGATTTTGATTTGGATTCGGAAATGGGTCTCTCTATCCATGGAATGTGGAGATGATAAGAAGTGGAAATTATTCTCCAAACTGGAAGATCATCACCACCACCGCCATCATGAATCGGAAGCGGCGTTATCGTTGGCGATTCAGGGATTTCTCTCTGCAATCTCGATTTCCTTGAGCGATTTGGGGTTTGATTCGAACAAATCCACATCCGAAATCATCTCATTTCCATGGATCAATCGGTGTTTCCAACTGCTTCGTATTCAACACAGAGCTTTTGCCAAGTTGATCGTAGAAATTGACTATCCAGTTCGCAAACACGAGGCTTCTTCAGGGGAGGGGTTTTTTCAATACACCTTGAGATTACTTGAGCTTTTGAATTCGATTAGCTCGTGTATAGCTGATCTGAGCCAAGCTCGGTTAAGGCTTTCTCATGCTTTAAGCTTAGTGGAATCTTCTCCTTCCTCTGCAATCGATCGTTTGAAGCCTATAGGAACGAGCAGTTTCAAGAACAGCTCGATCAAAGGCGAAATCGGAGAGATTTCTGTGGAAGTCAAGAATTCAGAGAAAGAATCCGTGGTTAATCGTGCTTTGACGATTATGAAACAGATCGGTTCATGGGTTTGCGGGCTTGTAATTTCTGGATTGAGCGGAGAAGTTGAAGTATTCATGGAGATGAGAAGATCAACAGGGAAATTAGGGGTTTCTGCTTTGGATCGATTGGATTTTACTGTTCATAAAGCAATCTGTGAATCTGGCGCGAGGTTGAAGGAAGTTCAAGAGGTGAATGATGCAGTTGAGCTTCTAGCTGCTTCCATGGCGGATCGGAAAAGAGCTGAGGATTTGCAGAAGAAACTAGCTGTTCTTGAGAAGGAGACAGATGATTTCAAGAAGGAAGTTGATTCTCTCTTCTCTGATGTTTTGGAAGAGAGAACCAAACTGCTTGATTCCCTGAGACGAACATATCAATAG MQRLRILIWIRKWVSLSMECGDDKKWKLFSKLEDHHHHRHHESEAALSLAIQGFLSAISISLSDLGFDSNKSTSEIISFPWINRCFQLLRIQHRAFAKLIVEIDYPVRKHEASSGEGFFQYTLRLLELLNSISSCIADLSQARLRLSHALSLVESSPSSAIDRLKPIGTSSFKNSSIKGEIGEISVEVKNSEKESVVNRALTIMKQIGSWVCGLVISGLSGEVEVFMEMRRSTGKLGVSALDRLDFTVHKAICESGARLKEVQEVNDAVELLAASMADRKRAEDLQKKLAVLEKETDDFKKEVDSLFSDVLEERTKLLDSLRRTYQ Homology
BLAST of Csor.00g196160 vs. ExPASy Swiss-Prot
Match: Q9LMM6 (Protein BPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BPS1 PE=2 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 3.5e-07 Identity = 71/276 (25.72%), Postives = 119/276 (43.12%), Query Frame = 0
BLAST of Csor.00g196160 vs. NCBI nr
Match: KAG6606891.1 (Protein BPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 620 bits (1598), Expect = 2.74e-223 Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0
BLAST of Csor.00g196160 vs. NCBI nr
Match: KAG7036596.1 (Protein BPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 561 bits (1447), Expect = 1.25e-200 Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 0
BLAST of Csor.00g196160 vs. NCBI nr
Match: XP_038905091.1 (uncharacterized protein LOC120091232 [Benincasa hispida] >XP_038905092.1 uncharacterized protein LOC120091232 [Benincasa hispida] >XP_038905093.1 uncharacterized protein LOC120091232 [Benincasa hispida] >XP_038905094.1 uncharacterized protein LOC120091232 [Benincasa hispida] >XP_038905095.1 uncharacterized protein LOC120091232 [Benincasa hispida]) HSP 1 Score: 403 bits (1036), Expect = 5.62e-138 Identity = 225/303 (74.26%), Postives = 252/303 (83.17%), Query Frame = 0
BLAST of Csor.00g196160 vs. NCBI nr
Match: KAA0048399.1 (protein BPS1 [Cucumis melo var. makuwa] >TYJ99875.1 protein BPS1 [Cucumis melo var. makuwa]) HSP 1 Score: 380 bits (975), Expect = 4.36e-129 Identity = 206/277 (74.37%), Postives = 234/277 (84.48%), Query Frame = 0
BLAST of Csor.00g196160 vs. NCBI nr
Match: XP_022152601.1 (uncharacterized protein LOC111020287 [Momordica charantia]) HSP 1 Score: 371 bits (952), Expect = 3.14e-125 Identity = 209/304 (68.75%), Postives = 241/304 (79.28%), Query Frame = 0
BLAST of Csor.00g196160 vs. ExPASy TrEMBL
Match: A0A5D3BNK7 (Protein BPS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00170 PE=4 SV=1) HSP 1 Score: 380 bits (975), Expect = 2.11e-129 Identity = 206/277 (74.37%), Postives = 234/277 (84.48%), Query Frame = 0
BLAST of Csor.00g196160 vs. ExPASy TrEMBL
Match: A0A6J1DI81 (uncharacterized protein LOC111020287 OS=Momordica charantia OX=3673 GN=LOC111020287 PE=4 SV=1) HSP 1 Score: 371 bits (952), Expect = 1.52e-125 Identity = 209/304 (68.75%), Postives = 241/304 (79.28%), Query Frame = 0
BLAST of Csor.00g196160 vs. ExPASy TrEMBL
Match: A0A0A0LD05 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G686210 PE=4 SV=1) HSP 1 Score: 366 bits (940), Expect = 5.60e-124 Identity = 199/274 (72.63%), Postives = 228/274 (83.21%), Query Frame = 0
BLAST of Csor.00g196160 vs. ExPASy TrEMBL
Match: A0A7N2LBL5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 244 bits (622), Expect = 2.03e-75 Identity = 146/314 (46.50%), Postives = 204/314 (64.97%), Query Frame = 0
BLAST of Csor.00g196160 vs. ExPASy TrEMBL
Match: A0A2N9J077 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58080 PE=4 SV=1) HSP 1 Score: 241 bits (614), Expect = 2.05e-74 Identity = 146/303 (48.18%), Postives = 203/303 (67.00%), Query Frame = 0
BLAST of Csor.00g196160 vs. TAIR 10
Match: AT1G01550.1 (Protein of unknown function (DUF793) ) HSP 1 Score: 57.4 bits (137), Expect = 2.5e-08 Identity = 71/276 (25.72%), Postives = 119/276 (43.12%), Query Frame = 0
BLAST of Csor.00g196160 vs. TAIR 10
Match: AT1G01550.2 (Protein of unknown function (DUF793) ) HSP 1 Score: 57.4 bits (137), Expect = 2.5e-08 Identity = 71/276 (25.72%), Postives = 119/276 (43.12%), Query Frame = 0
BLAST of Csor.00g196160 vs. TAIR 10
Match: AT2G46080.1 (CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 49.7 bits (117), Expect = 5.2e-06 Identity = 65/280 (23.21%), Postives = 119/280 (42.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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