Csor.00g196050 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g196050
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S ribosomal protein L44
Location	Csor_Chr01: 1152658 .. 1156594 (+)
RNA-Seq Expression	Csor.00g196050
Synteny	Csor.00g196050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAGCTTCTGAAAAAATGTCTCCGTCCAAACGCCCACTCCATTTTCTCCTCCGCTGCTTCGGATCTTCCCCCAAAGTTCAAACCAAGAAGAATCCTACGACCGGCCGATGGGACAGCCGGATTCCGTCGCCTCGGTTCCGATTTAAGAAGTCCTCTGCAACTGTGCCAATCGACGTTGCCGTGCCGGAGATCACCGTGCCATGTGACGATAAAGCCTCTTTTTCGCCGGAGTTTAAGAAACCGCCTCCGTCGCCGCTGATTAAATCCAGAGCTCCGACGGTCCGAACCAAGATCGTCGAGTTGATAAAGCCGAGTCAAACTTGGAAGAAAACAGAGTCAACCCGGTATGATTCCCTTACGCCGGCGAAAAGAACCGCCGCGTTATTGCATTCTATCTCTCTTCCCTCCCGGAGACTAAACCGCCAAAAAGATTTGAAAAAAACAGTATCTCATCTCTCCGCCGTCAAAACCCCCACGCCGACGTCATCCGAACGGAGGAAACCGGCGGATAAGGCTCCGATGAATTCCCCGGCAAAGATACTCGATCTGATTATTGTGATTGTTGCAGTGGCGATTGTGGTACTGTGGGGACAACTCTGCGCCATACTCTGCACGACGGCGCTGTTCTATTTCTGCCGCCGATTGAGATCAGAAACCGAATCAGAGGGCGGCGGCGAGATGCGAGTCTTGAATCGAAAAGGAAGTGGTTTCGGGAAGGTTCCTGGAGAGGTTTGTGTAAGGTTACGGGGAACCGCCATGTGAGGGAGCTTGAAGAATATTTTAATGGCGGAGATGTGACAGGTTGTTACGCTAATTTTTGTAAATTATGGGCGAGGGTAAGAGTTCGAGCACTGTAAAACTAATAATTCGACTAATATATAGAAATATAAATAATATCGAAAAAAAATAAAATAAACCAATCAGCTATTTTCGTGATTTATGTATATATTTATATATATGGTTTATTTATAATTTTCAACGACCTCAAAACTCATGAAATCTAGATGCGACCCTTATGTTCGGGATGTCATGGGTTAGAAATGGATGTCAAGTCAAATAGGTACCTCATTTAAGTCTGCAGGTTGTTGAAATATCAATAAAACGACCTAATGATAATAAGTTCAACATGCTTGACTGTCCCGACCCAATGCCTAAAGTAAAAGCAATTAGCAATACGCACATGGTTGCTAATGGCATGCTTTGCGAGGAACTGTTCATAAAACTTAGGCGCTATATAACTTATTAGTCATAGGTTATAGTTAAGACGTTATATTGAACCCTCGTTCCTACATGTTGTGAGTTAAACTTCGATTTTTTTTTTTAAATTTTAACTCATCGTTGAGCATCGGTGTATGTTTGTTGGACTTTATTATTATTATTATTACTGTTATTTATGGTAATTTACATTAAAAAGGTCAATAATATGTGATAAAACAATAACAATAATTTTTTAGTTTTTAAAAATTTGCGTTTGTTTTCAAATGGAATTAAAAATTCAATTTATTTTCTATAAAAATATGAAAATCATGGTAAAAATTGGTGCAAAAATAAACCAATTTTAAAAATAGAATAATCATACCCTAAATTATATATATATATATAATTATTTTTATTTATGTGTCGTTGTCAACTATTTTTAATTGCATATTTGATTAGATATTACTTTATTTATTTATTTTTTTCATACTAAAAAATGCAATAATTAGCGTATAGATCCATCATTCTATTTCTGCCGGCTTTATCATTATTCTGCATGACTATTCACAAAATATATATATATATATATATATATATATATATATATATATATATATATTTGTTGTACTTAGGTTAATAATAATAATTCAGAAGTTAATTTTAACTTCAAATTTGTAATTTTATTGAGCTAAATCATATATTTAAATAATAATGTTACCATTAATATTTTTTTAAAATTTTAAAATTTAATTGATAGATATTATTTTTAAGGATGCTTTTAAGGCAATTTGAACATTACTCAATAGATAAGACATAAATTATTATTAAAAAAAAAGTCTAAAAATACTTTAAAAGGATAATTTTTCCACGTATGTTTTAAGGATATTTATTTTGTTTTATTTTTGTAACAATAGAATCACATTTGAATTAAAAATAAAACCAATAAAAATTTATCACCTTAGTTTTATAACTATTTGATTTTTTTTTTAATTTTCGTTTTTTTTTATAAATTTATTGTTGGGCCGTGAATGAATCTACTTGGGCCCAAATCCACAAACTCAAACGTTGACCCATCCGTTCTCTTCTCCAATTCAACAGATATATAAGTCTCGTTTCGCCTCCATTTCCTACTCTCCCATCTGTTAGGGTTTTTTTCGGGCAGGTCTCGTCGACGTTCAGCAGCCATGGTACACTTCTCTTACCCTTTGTCTCTCAATCCGAGTTTGTTAGCTACTCATTTATTTTGTTGAATCTCTCTTGTTGGTTGTTTCTTCTCCGAGATTTTGATGTGCATTTACTTCCACTCTTGATTGCCTCTGTGTTTTTAGCTGCTCTATCTGTTTGTTCTTTTGTTTGACCTTGTTGTGCATGATGCTGAAGATTTATGTGATGGAAAAAGTAAACTGCTGAAGCGATTGGTATCGTCTTGGAAGTTCAGTGTTCTGTGGAGTTTTAGTGGCGGGCACAGAGGATGAATTGTTATGGTCTTCGTTTTCTTTTGCGTGCATTTTTTTTTTAAATTGTTCGTACTGTCGATCTGAATTTCTGCTTAAAAGGCGACTGGTTCATCTTTTGTGGTCGAGTGATAGTGTTAACAAATTATGTTACGTGTTACTGAGCTTCTGAAGGTGCGAGAATTGACTGAGATTGGGTTGTTTCATCATGCACTTTTTTTAAGGAGAATTTTCCTCGAGTTAAACATTGCACATGGAATATATTAATGATTCTGGATCCTTGATTATGAGTTTATGGAATATTCCATAGAAAATGGATATTGGATCAGTGAGTGCAAACGTGGTAGTGGAGGATCATATTGGTTCGTAATATTTGTTGTCTTATTGATGTTTTTAGCTAGTAGTGTCGTAGTTTATAATTTGAATATGGATACTGTATTGGGAAACAGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTCCACAAGAAGGTTAGTTAGTTTTTCTCTCATCCAGTCAATTCTTACTTTCTTTCTTTTCCACGAGGCAAGGAAATCAAAATTGAAGTGAAACATGTGAATCTCACAGGCTAAAACTACCAAGAAGATTGTATTGAGGTTGCAATGTCAGGGTTGCAAACACGTATCCCAGCACGCTATCAAGGTTAGAATGCCAAGTATTTCATCATTTTCTGTTCACGGGCTTTCACTATTCAGTATCTTGTTAATTTAGTGCACTTGTTCGAACAATCTTTCAAGCATATAGTGGTTTTCAAACTGCATACTTAAGGTAGTTGTCTCTGGGGTCCCATAGAGCTACATTCATTTTACCCCCCTAAAATAAATGCCACTTGACTGCTATACCTGTGAATGCCCCTGGAACACAACATTCGCATTTGGGGTGAAATATTTGGTTGGGACTCTGATTTCAATTGCAAAATTTTTTTCTAAGCACTTATCGCGATGGATTGTTAGCTGTTTTAGAAAGGTCCAAATGTGGAAAAGAAACTTTCATCAGTTAGCTGAGTACTTTGTCGGCTCCTTATTTCATTTCTAACTAAATAACTTAATTGGCAAATGCAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACATCTCTTTTCTAG

mRNA sequence

ATGGCGGAAGCTTCTGAAAAAATGTCTCCGTCCAAACGCCCACTCCATTTTCTCCTCCGCTGCTTCGGATCTTCCCCCAAAGTTCAAACCAAGAAGAATCCTACGACCGGCCGATGGGACAGCCGGATTCCGTCGCCTCGGTTCCGATTTAAGAAGTCCTCTGCAACTGTGCCAATCGACGTTGCCGTGCCGGAGATCACCGTGCCATGTGACGATAAAGCCTCTTTTTCGCCGGAGTTTAAGAAACCGCCTCCGTCGCCGCTGATTAAATCCAGAGCTCCGACGGTCCGAACCAAGATCGTCGAGTTGATAAAGCCGAGTCAAACTTGGAAGAAAACAGAGTCAACCCGGTATGATTCCCTTACGCCGGCGAAAAGAACCGCCGCGTTATTGCATTCTATCTCTCTTCCCTCCCGGAGACTAAACCGCCAAAAAGATTTGAAAAAAACAGTATCTCATCTCTCCGCCGTCAAAACCCCCACGCCGACGTCATCCGAACGGAGGAAACCGGCGGATAAGGCTCCGATGAATTCCCCGGCAAAGATACTCGATCTGATTATTGTGATTGTTGCAGTGGCGATTGTGGTACTGTGGGGACAACTCTGCGCCATACTCTGCACGACGGCGCTGTTCTATTTCTGCCGCCGATTGAGATCAGAAACCGAATCAGAGGGCGGCGGCGAGATGCGAGTCTTGAATCGAAAAGGAAGTGGTTTCGGGAAGGTTCCTGGAGAGGTTTGTGTAAGGTCTCGTCGACGTTCAGCAGCCATGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTCCACAAGAAGGCTAAAACTACCAAGAAGATTGTATTGAGGTTGCAATGTCAGGGTTGCAAACACGTATCCCAGCACGCTATCAAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACATCTCTTTTCTAG

Coding sequence (CDS)

ATGGCGGAAGCTTCTGAAAAAATGTCTCCGTCCAAACGCCCACTCCATTTTCTCCTCCGCTGCTTCGGATCTTCCCCCAAAGTTCAAACCAAGAAGAATCCTACGACCGGCCGATGGGACAGCCGGATTCCGTCGCCTCGGTTCCGATTTAAGAAGTCCTCTGCAACTGTGCCAATCGACGTTGCCGTGCCGGAGATCACCGTGCCATGTGACGATAAAGCCTCTTTTTCGCCGGAGTTTAAGAAACCGCCTCCGTCGCCGCTGATTAAATCCAGAGCTCCGACGGTCCGAACCAAGATCGTCGAGTTGATAAAGCCGAGTCAAACTTGGAAGAAAACAGAGTCAACCCGGTATGATTCCCTTACGCCGGCGAAAAGAACCGCCGCGTTATTGCATTCTATCTCTCTTCCCTCCCGGAGACTAAACCGCCAAAAAGATTTGAAAAAAACAGTATCTCATCTCTCCGCCGTCAAAACCCCCACGCCGACGTCATCCGAACGGAGGAAACCGGCGGATAAGGCTCCGATGAATTCCCCGGCAAAGATACTCGATCTGATTATTGTGATTGTTGCAGTGGCGATTGTGGTACTGTGGGGACAACTCTGCGCCATACTCTGCACGACGGCGCTGTTCTATTTCTGCCGCCGATTGAGATCAGAAACCGAATCAGAGGGCGGCGGCGAGATGCGAGTCTTGAATCGAAAAGGAAGTGGTTTCGGGAAGGTTCCTGGAGAGGTTTGTGTAAGGTCTCGTCGACGTTCAGCAGCCATGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTCCACAAGAAGGCTAAAACTACCAAGAAGATTGTATTGAGGTTGCAATGTCAGGGTTGCAAACACGTATCCCAGCACGCTATCAAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACATCTCTTTTCTAG

Protein sequence

MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRWDSRIPSPRFRFKKSSATVPIDVAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQTWKKTESTRYDSLTPAKRTAALLHSISLPSRRLNRQKDLKKTVSHLSAVKTPTPTSSERRKPADKAPMNSPAKILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETESEGGGEMRVLNRKGSGFGKVPGEVCVRSRRRSAAMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF

Homology

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BLAST of Csor.00g196050 vs. ExPASy Swiss-Prot
Match: Q96499 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 213.4 bits (542), Expect = 4.3e-54
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 257 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 316
           MVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 317 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 362
           KAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Csor.00g196050 vs. ExPASy Swiss-Prot
Match: O23290 (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 203.8 bits (517), Expect = 3.4e-51
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 257 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 316
           MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 317 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 362
           KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Csor.00g196050 vs. ExPASy Swiss-Prot
Match: O59870 (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 174.5 bits (441), Expect = 2.2e-42
Identity = 82/104 (78.85%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 257 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 316
           MVNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 317 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 361
           KAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct: 61  KAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

[Close]

BLAST of Csor.00g196050 vs. ExPASy Swiss-Prot
Match: A8PCG3 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) OX=240176 GN=RPL44 PE=3 SV=2)

HSP 1 Score: 172.9 bits (437), Expect = 6.4e-42
Identity = 81/104 (77.88%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 257 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 316
           MVN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 317 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 361
           KAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK KG +L
Sbjct: 61  KAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104

[Close]

BLAST of Csor.00g196050 vs. ExPASy Swiss-Prot
Match: Q9UWE4 (60S ribosomal protein L44 OS=Coprinopsis cinerea OX=5346 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.9 bits (437), Expect = 6.4e-42
Identity = 81/104 (77.88%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 257 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 316
           MVN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 317 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 361
           KAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK KG +L
Sbjct: 61  KAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104

[Close]

BLAST of Csor.00g196050 vs. NCBI nr
Match: KAG6606901.1 (60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 706 bits (1821), Expect = 4.27e-256
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 0


Query: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRWDSRIPSPRFRFKKSSATVPID 60
           MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRWDSRIPSPRFRFKKSSATVPID
Sbjct: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRWDSRIPSPRFRFKKSSATVPID 60

Query: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQTWKKTESTRYDS 120
           VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQTWKKTESTRYDS
Sbjct: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQTWKKTESTRYDS 120

Query: 121 LTPAKRTAALLHSISLPSRRLNRQKDLKKTVSHLSAVKTPTPTSSERRKPADKAPMNSPA 180
           LTPAKRTAALLHSISLPSRRLNRQKDLKKTVSHLSAVKTPTPTSSERRKPADKAPMNSPA
Sbjct: 121 LTPAKRTAALLHSISLPSRRLNRQKDLKKTVSHLSAVKTPTPTSSERRKPADKAPMNSPA 180

Query: 181 KILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETESEGGGEMRVLNRKGSGFG 240
           KILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETESEGGGEMRVLNRKGSGFG
Sbjct: 181 KILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETESEGGGEMRVLNRKGSGFG 240

Query: 241 KVPGEVCVRSRRRSAAMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYD 300
           KVPGEVCVRSRRRSAAMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYD
Sbjct: 241 KVPGEVCVRSRRRSAAMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYD 300

Query: 301 RKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 360
           RKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL
Sbjct: 301 RKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSL 360

[Close]

BLAST of Csor.00g196050 vs. NCBI nr
Match: XP_022949237.1 (uncharacterized protein LOC111452650 [Cucurbita moschata])

HSP 1 Score: 457 bits (1176), Expect = 1.51e-159
Identity = 240/251 (95.62%), Postives = 240/251 (95.62%), Query Frame = 0


Query: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRWDSRIPSPRFRFKKSSATVPID 60
           MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGR DSRIPSPRFRFKKSSATVPID
Sbjct: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPID 60

Query: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQTWKKTESTRYDS 120
           VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQ WKKTESTR D 
Sbjct: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQPWKKTESTRSDF 120

Query: 121 LTPAKRTAALLHSISLPSRRLNRQKDLKKTVSHLSAVKTPTPTSSERRKPADKAPMNSPA 180
           LTPAKRTAALLHSISLPSRRLNRQKD KKTVSHLSAVKTPTPTSSERRKPADK PMNSPA
Sbjct: 121 LTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPMNSPA 180

Query: 181 KILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETESEGGGEMRVLNRKGSGFG 240
           KILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETE EGGGEMRVLNRKGSGF 
Sbjct: 181 KILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETELEGGGEMRVLNRKGSGFR 240

Query: 241 KVPGEVCVRSR 251
           KV GEVC R R
Sbjct: 241 KVSGEVCARLR 251

[Close]

BLAST of Csor.00g196050 vs. NCBI nr
Match: CBI27147.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 231 bits (589), Expect = 9.35e-70
Identity = 139/246 (56.50%), Postives = 159/246 (64.63%), Query Frame = 0


Query: 128 AALLHSISLPSRRLNRQKDLKKTVSHLSAVKTPTPTSSERRKPADKAPMNSPAKILDLII 187
           A +  S S P+RR  +Q                 P       P D         ++ + I
Sbjct: 86  APMARSDSFPARRRQKQ-----------------PALRFENSPRDGKLAGKADSVIAMTI 145

Query: 188 VIVAVAIVVLWGQLCAILCTTALFYFCRRLRS---ETESEGGGEMRVLN---------RK 247
           ++V +A++V+ G+L AIL T+A FYF   LRS     ES+  G+ + L           +
Sbjct: 146 IMVTLAMMVICGRLFAILFTSAWFYFVPYLRSGSKSNESDRSGDRKTLTLARRFLQAATE 205

Query: 248 GSGFGKVPGEVCVRSRRRSAAMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQG 307
            S   K   +    SR  S  MVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQG
Sbjct: 206 RSSQKKKKKKNPNFSREFSVTMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQG 265

Query: 308 KRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKG 361
           KRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKG
Sbjct: 266 KRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG 314

[Close]

BLAST of Csor.00g196050 vs. NCBI nr
Match: EXB55172.1 (60S ribosomal protein L44 [Morus notabilis])

HSP 1 Score: 228 bits (582), Expect = 6.02e-67
Identity = 130/205 (63.41%), Postives = 145/205 (70.73%), Query Frame = 0


Query: 182 ILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETESEGG-GEMRVL------NR 241
           ++ + IV+V + I+++WG+LCAILCT+A  YF  RL S  +  G  G  R L      N+
Sbjct: 256 VVGMSIVLVTLVIMIVWGRLCAILCTSAWLYFVPRLSSAVDVGGVLGRPRGLDLGSEENK 315

Query: 242 KGSGFGKVPGEVCVRSRR------------------RSAAMVNVPKTKKTYCKSKECKKH 301
           K         E+  R+ R                  +    VNVPKTKKTYCKSKECKKH
Sbjct: 316 KKVVSDTASIEIGSRNMRFIDSPTSNLLQSFWCWKLKGTVHVNVPKTKKTYCKSKECKKH 375

Query: 302 TLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHV 361
           TLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKHV
Sbjct: 376 TLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQACKHV 435

[Close]

BLAST of Csor.00g196050 vs. NCBI nr
Match: XP_021981350.1 (60S ribosomal protein L44 [Helianthus annuus] >KAF5789451.1 putative ribosomal protein L44e [Helianthus annuus])

HSP 1 Score: 218 bits (555), Expect = 7.56e-67
Identity = 106/110 (96.36%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 252 RRSAAMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 311
           RRS+AMVNVPKTKKTYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK
Sbjct: 46  RRSSAMVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 105

Query: 312 PVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 361
           PVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 106 PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 155

[Close]

BLAST of Csor.00g196050 vs. ExPASy TrEMBL
Match: A0A6J1GBH7 (uncharacterized protein LOC111452650 OS=Cucurbita moschata OX=3662 GN=LOC111452650 PE=4 SV=1)

HSP 1 Score: 457 bits (1176), Expect = 7.33e-160
Identity = 240/251 (95.62%), Postives = 240/251 (95.62%), Query Frame = 0


Query: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRWDSRIPSPRFRFKKSSATVPID 60
           MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGR DSRIPSPRFRFKKSSATVPID
Sbjct: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPID 60

Query: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQTWKKTESTRYDS 120
           VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQ WKKTESTR D 
Sbjct: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQPWKKTESTRSDF 120

Query: 121 LTPAKRTAALLHSISLPSRRLNRQKDLKKTVSHLSAVKTPTPTSSERRKPADKAPMNSPA 180
           LTPAKRTAALLHSISLPSRRLNRQKD KKTVSHLSAVKTPTPTSSERRKPADK PMNSPA
Sbjct: 121 LTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPMNSPA 180

Query: 181 KILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETESEGGGEMRVLNRKGSGFG 240
           KILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETE EGGGEMRVLNRKGSGF 
Sbjct: 181 KILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETELEGGGEMRVLNRKGSGFR 240

Query: 241 KVPGEVCVRSR 251
           KV GEVC R R
Sbjct: 241 KVSGEVCARLR 251

[Close]

BLAST of Csor.00g196050 vs. ExPASy TrEMBL
Match: F6HF51 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g02080 PE=3 SV=1)

HSP 1 Score: 231 bits (589), Expect = 1.40e-69
Identity = 171/374 (45.72%), Postives = 205/374 (54.81%), Query Frame = 0


Query: 27  KVQTKKNPTTGRWDSRIPS------PRFRFKKSSA-TVPIDVAVPEITVPCDDKASFSPE 86
           K   KK+    R D+R  S       RFR KKS+A TVP+D +VPE     D+     PE
Sbjct: 23  KFPIKKSCDDPRSDNRKESRFGFSCSRFRVKKSAAKTVPVDASVPEKENRDDEIRPEKPE 82

Query: 87  FKKPPPSPLIKSRAPTVRTKIVELIKPSQTWKKTESTRY---DSLTPAKRTAALLHSISL 146
             +   S    S A      ++E         KT  TRY    S+TP  R     H   L
Sbjct: 83  KPENLRSTSQNSGACHGTQVVLE---------KTAKTRYGTAQSITPENRK----HLDRL 142

Query: 147 PSRR---LNRQKDLKKTVSHLSAVKTPTPTSSERRKPADKAPMNS-PAK----------- 206
            S +    ++++ L+   S LS   +P   S+     A  A  +S PA+           
Sbjct: 143 DSSKGATCHKKRKLESKRSRLSQPSSPENVSATTSPAAPMARSDSFPARRRQKQPALRFE 202

Query: 207 --------------ILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETESEGGG 266
                         ++ + I++V +A++V+ G+L AIL T+A FYF   LRS ++S    
Sbjct: 203 NSPRDGKLAGKADSVIAMTIIMVTLAMMVICGRLFAILFTSAWFYFVPYLRSGSKSN--- 262

Query: 267 EMRVLNRKGSGFGKVPGEVCVRSRRRSAAMVNVPKTKKTYCKSKECKKHTLHKVTQYKKG 326
                                         VNVPKTKKTYCKSKEC+KHTLHKVTQYKKG
Sbjct: 263 ----------------------------ESVNVPKTKKTYCKSKECRKHTLHKVTQYKKG 322

Query: 327 KDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHF 361
           KDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHF
Sbjct: 323 KDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHF 352

[Close]

BLAST of Csor.00g196050 vs. ExPASy TrEMBL
Match: W9RHP1 (60S ribosomal protein L44 OS=Morus notabilis OX=981085 GN=L484_018099 PE=3 SV=1)

HSP 1 Score: 228 bits (582), Expect = 2.91e-67
Identity = 130/205 (63.41%), Postives = 145/205 (70.73%), Query Frame = 0


Query: 182 ILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETESEGG-GEMRVL------NR 241
           ++ + IV+V + I+++WG+LCAILCT+A  YF  RL S  +  G  G  R L      N+
Sbjct: 256 VVGMSIVLVTLVIMIVWGRLCAILCTSAWLYFVPRLSSAVDVGGVLGRPRGLDLGSEENK 315

Query: 242 KGSGFGKVPGEVCVRSRR------------------RSAAMVNVPKTKKTYCKSKECKKH 301
           K         E+  R+ R                  +    VNVPKTKKTYCKSKECKKH
Sbjct: 316 KKVVSDTASIEIGSRNMRFIDSPTSNLLQSFWCWKLKGTVHVNVPKTKKTYCKSKECKKH 375

Query: 302 TLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHV 361
           TLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKHV
Sbjct: 376 TLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQACKHV 435

[Close]

BLAST of Csor.00g196050 vs. ExPASy TrEMBL
Match: A0A251TSC4 (Putative ribosomal protein L44e, Zinc-binding ribosomal protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g0244751 PE=3 SV=1)

HSP 1 Score: 218 bits (555), Expect = 3.66e-67
Identity = 106/110 (96.36%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 252 RRSAAMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 311
           RRS+AMVNVPKTKKTYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK
Sbjct: 46  RRSSAMVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTK 105

Query: 312 PVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 361
           PVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 106 PVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 155

[Close]

BLAST of Csor.00g196050 vs. ExPASy TrEMBL
Match: A0A6A2YFW4 (60S ribosomal protein L44 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111835pilonHSYRG00030 PE=3 SV=1)

HSP 1 Score: 217 bits (552), Expect = 4.26e-67
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 254 SAAMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPV 313
           +AAMVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPV
Sbjct: 21  AAAMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPV 80

Query: 314 FHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 361
           FHKKAKTTKKIVLRLQCQGCKHVSQH+IKRCKHFEIGGDKKGKGTSLF
Sbjct: 81  FHKKAKTTKKIVLRLQCQGCKHVSQHSIKRCKHFEIGGDKKGKGTSLF 128

[Close]

BLAST of Csor.00g196050 vs. TAIR 10
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 203.8 bits (517), Expect = 2.4e-52
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 257 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 316
           MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 317 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 362
           KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Csor.00g196050 vs. TAIR 10
Match: AT4G14320.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 203.8 bits (517), Expect = 2.4e-52
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 257 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 316
           MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 317 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 362
           KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Csor.00g196050 vs. TAIR 10
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 179.1 bits (453), Expect = 6.4e-45
Identity = 86/93 (92.47%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 257 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 316
           MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 317 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI 350
           KAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEI
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEI 93

The following BLAST results are available for this feature:

BLAST of Csor.00g196050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96499	4.3e-54	98.10	60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3	[more]
O23290	3.4e-51	93.33	60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3	[more]
O59870	2.2e-42	78.85	60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3	[more]
A8PCG3	6.4e-42	77.88	60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC ...	[more]
Q9UWE4	6.4e-42	77.88	60S ribosomal protein L44 OS=Coprinopsis cinerea OX=5346 GN=RPL44 PE=3 SV=3	[more]

BLAST of Csor.00g196050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606901.1	4.27e-256	100.00	60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022949237.1	1.51e-159	95.62	uncharacterized protein LOC111452650 [Cucurbita moschata]	[more]
CBI27147.3	9.35e-70	56.50	unnamed protein product, partial [Vitis vinifera]	[more]
EXB55172.1	6.02e-67	63.41	60S ribosomal protein L44 [Morus notabilis]	[more]
XP_021981350.1	7.56e-67	96.36	60S ribosomal protein L44 [Helianthus annuus] >KAF5789451.1 putative ribosomal p...	[more]

BLAST of Csor.00g196050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GBH7	7.33e-160	95.62	uncharacterized protein LOC111452650 OS=Cucurbita moschata OX=3662 GN=LOC1114526...	[more]
F6HF51	1.40e-69	45.72	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g02080 PE=3 SV=...	[more]
W9RHP1	2.91e-67	63.41	60S ribosomal protein L44 OS=Morus notabilis OX=981085 GN=L484_018099 PE=3 SV=1	[more]
A0A251TSC4	3.66e-67	96.36	Putative ribosomal protein L44e, Zinc-binding ribosomal protein OS=Helianthus an...	[more]
A0A6A2YFW4	4.26e-67	97.22	60S ribosomal protein L44 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111835pil...	[more]

BLAST of Csor.00g196050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23390.1	2.4e-52	93.33	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.1	2.4e-52	93.33	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.2	6.4e-45	92.47	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000552	Ribosomal protein L44e	PFAM	PF00935	Ribosomal_L44	coord: 275..349 e-value: 1.3E-33 score: 115.3
IPR000552	Ribosomal protein L44e	PANTHER	PTHR10369	60S RIBOSOMAL PROTEIN L36A/L44	coord: 235..361
IPR000552	Ribosomal protein L44e	PROSITE	PS01172	RIBOSOMAL_L44E	coord: 319..330
None	No IPR available	GENE3D	3.10.450.80		coord: 257..361 e-value: 5.3E-50 score: 170.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..314
None	No IPR available	PANTHER	PTHR10369:SF38	60S RIBOSOMAL PROTEIN L44-LIKE	coord: 235..361
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 258..350

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g196050.m01	Csor.00g196050.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome