Csor.00g194680 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g194680
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	30S ribosomal protein 3, chloroplastic-like
Location	Csor_Chr01: 1941811 .. 1943067 (-)
RNA-Seq Expression	Csor.00g194680
Synteny	Csor.00g194680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCTTCGTCTTCCTCTTGAATTCTCTCTATCTCGAAAGACAGTGGCTATGATGTTATCCATGGCTGTTCAGCTCCAGCCCAACTTCAATTTCTGTCTCAATACCCCCACCTTCTCTTCTCACAACGCCACTTCTAAACCCTATCAACTCCCTTTTGCTTTGAAGCAAAGAACCACCGCTCTCTCCTCTCCCTCATCTTCGATTTCTTCCTGCATTGCCGACGTCTATTCTGTTTCTGGATTGAAGTTGAGGCGCCAAAGCTTCAGAACTCTCCAAGTCTCTGCTTCTGCTGCGGCCGCTGACGCTGTTCAAGCTGATTCAGAATCGCCTGTTGCTGATGATTCCCTTTCAGAGTCCTCGCCTGATAAGGAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATGCTTGTTCCGTTAATTTTCAGACCAAATTGCTTACTATGTGGCTATGAATTGTTCATTATGACTGGTCATCGAGTACCATTATTATCTATGCAACAAGTTTTCGAATTTTACTTTTGTGATTAACATTGAAGATAATTTCTAATGAGAATGTTGATGTCGATTTCCATGAATACCTAAAAGATAAAGAAATATGAAATGAACATATGGAAGAAGACCAGTTCTCACTCTATAGTACGATGTTTGAGGTAAAGTTAACCTTTAAATGTTGATTTCATTAAGTCGAACCTTAAAATTGTATAACTAATGAATTAATACCTCTTGTTGGTCGTTCTTCTAGGTTTTGGTTAGATGTTGGGCTGGATTCTGGTCATGGAAATTGGGATACAGTTACTTTTGTGAACGCTCAGTTTTATGGTTGTTTTGAGCATTAGTTTTTGGTTGGATCTTGATGTTTTAGTGTTGAATGCGAGTACATTTTTATGTCGAGAAAAATAGTTTTATCAGGAAGGCCTTGTCTTACAAATTAAACATTCATTGTTTTTCCGATGTTGTAGAAACTTGGAGTGGTTGTGAAACCGATGGAAAAGCCACGGCTTGTTCTGAAGTTCATATGGATGGAGAAGAACATTGGCATTGGACTTGATCAGATGATTCCTGGTCATGGAACTATTCCTCTTAGTCCATACTACTTCTGGCCTAGGAAAGATGCATGGGAAGAGCTCAAAGTTTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTAAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAGCCTGGCTTAA

mRNA sequence

ATGCGGCTTCGTCTTCCTCTTGAATTCTCTCTATCTCGAAAGACAGTGGCTATGATGTTATCCATGGCTGTTCAGCTCCAGCCCAACTTCAATTTCTGTCTCAATACCCCCACCTTCTCTTCTCACAACGCCACTTCTAAACCCTATCAACTCCCTTTTGCTTTGAAGCAAAGAACCACCGCTCTCTCCTCTCCCTCATCTTCGATTTCTTCCTGCATTGCCGACGTCTATTCTGTTTCTGGATTGAAGTTGAGGCGCCAAAGCTTCAGAACTCTCCAAGTCTCTGCTTCTGCTGCGGCCGCTGACGCTGTTCAAGCTGATTCAGAATCGCCTGTTGCTGATGATTCCCTTTCAGAGTCCTCGCCTGATAAGGAGAAACTTGGAGTGGTTGTGAAACCGATGGAAAAGCCACGGCTTGTTCTGAAGTTCATATGGATGGAGAAGAACATTGGCATTGGACTTGATCAGATGATTCCTGGTCATGGAACTATTCCTCTTAGTCCATACTACTTCTGGCCTAGGAAAGATGCATGGGAAGAGCTCAAAGTTTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTAAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAGCCTGGCTTAA

Coding sequence (CDS)

ATGCGGCTTCGTCTTCCTCTTGAATTCTCTCTATCTCGAAAGACAGTGGCTATGATGTTATCCATGGCTGTTCAGCTCCAGCCCAACTTCAATTTCTGTCTCAATACCCCCACCTTCTCTTCTCACAACGCCACTTCTAAACCCTATCAACTCCCTTTTGCTTTGAAGCAAAGAACCACCGCTCTCTCCTCTCCCTCATCTTCGATTTCTTCCTGCATTGCCGACGTCTATTCTGTTTCTGGATTGAAGTTGAGGCGCCAAAGCTTCAGAACTCTCCAAGTCTCTGCTTCTGCTGCGGCCGCTGACGCTGTTCAAGCTGATTCAGAATCGCCTGTTGCTGATGATTCCCTTTCAGAGTCCTCGCCTGATAAGGAGAAACTTGGAGTGGTTGTGAAACCGATGGAAAAGCCACGGCTTGTTCTGAAGTTCATATGGATGGAGAAGAACATTGGCATTGGACTTGATCAGATGATTCCTGGTCATGGAACTATTCCTCTTAGTCCATACTACTTCTGGCCTAGGAAAGATGCATGGGAAGAGCTCAAAGTTTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTAAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAGCCTGGCTTAA

Protein sequence

MRLRLPLEFSLSRKTVAMMLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVYSVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGSLA

Homology

[Close]

BLAST of Csor.00g194680 vs. ExPASy Swiss-Prot
Match: P82412 (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=1 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.6e-48
Identity = 114/200 (57.00%), Postives = 134/200 (67.00%), Query Frame = 0


Query: 19  MLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVYS 78
           MLSMAV  QPN N       + S   + KP++ P A        SSPS S          
Sbjct: 1   MLSMAV--QPNINAIAKPSIYQSPKLSLKPFKTP-AFANPKPFFSSPSFS---------- 60

Query: 79  VSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKPR 138
               +L++++  +L V A    +D     +E  + DD L     +KEKL V+VKPM+KPR
Sbjct: 61  ----QLKKKNNWSLFV-APETISDVAIMGNEVDIDDDLL----VNKEKLKVLVKPMDKPR 120

Query: 139 LVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMII 198
           LVLKFIWMEKNIG+ LDQ IPGHGT+PLSPYYFWPRKDAWEELKVLLE+KPWISQKQMII
Sbjct: 121 LVLKFIWMEKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMII 178

Query: 199 LLNQATDIINLWQQGGGSLA 219
           LLNQATDIINLWQQ GG+LA
Sbjct: 181 LLNQATDIINLWQQSGGNLA 178

[Close]

BLAST of Csor.00g194680 vs. ExPASy Swiss-Prot
Match: O48609 (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.5e-41
Identity = 97/178 (54.49%), Postives = 117/178 (65.73%), Query Frame = 0


Query: 48  PYQLPFALKQRTTALSSPSSSISSCIADVYSVSGLKLRRQSFRTLQVSASAAAADAVQA- 107
           P   P    +   +L  PS+  SS      S+  LK RR   R+L+   +AAAA AV+A 
Sbjct: 8   PATTPALASRPRVSLPRPSTPSSSS-----SLVHLKSRRPPLRSLRSLTAAAAAAAVEAG 67

Query: 108 ------DSESPVADDSLSESSPDKEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPG 167
                   + P+  +  +E+  + E+  V V   + P LVLKFIWMEKNIGI LDQM+PG
Sbjct: 68  EPYFGLGDDEPLGGEGDAEAVVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPG 127

Query: 168 HGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGSLA 219
            G+IPLSPYYFWPRKDAWEEL+  LE K WISQKQMIILLNQATDIINLWQQGGGSL+
Sbjct: 128 VGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSLS 180

[Close]

BLAST of Csor.00g194680 vs. ExPASy Swiss-Prot
Match: Q9LFV0 (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g15760 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.0e-39
Identity = 74/102 (72.55%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 118 SESSP-DKEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKD 177
           SES P  K+K+ V+VKP+EKP++VLKF+WM+K+IG+ LD MIPG GTIPLSPYYFWPRKD
Sbjct: 82  SESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKD 141

Query: 178 AWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGSLA 219
           AWEELK LLESKPWIS+   + LLNQATDIINLWQ  GG L+
Sbjct: 142 AWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSGGDLS 183

[Close]

BLAST of Csor.00g194680 vs. ExPASy Swiss-Prot
Match: Q9SX22 (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g68590 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.0e-38
Identity = 80/131 (61.07%), Postives = 98/131 (74.81%), Query Frame = 0


Query: 87  QSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKPRLVLKFIWM 146
           Q+ + + V        A +  +   V     S+++P  ++   VVKP EK R+VLKF+WM
Sbjct: 35  QTTKPISVKRKIITLAAPETLTAETVTGIDTSDNTP--QQTIKVVKPDEKSRVVLKFVWM 94

Query: 147 EKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 206
           EKNIG+GLDQ +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDI
Sbjct: 95  EKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDI 154

Query: 207 INLWQQGGGSL 218
           INLWQQ GG+L
Sbjct: 155 INLWQQSGGNL 163

[Close]

BLAST of Csor.00g194680 vs. ExPASy Swiss-Prot
Match: P51351 (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=ycf65 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.2e-21
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 138 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 197
           +  LK +W+E NI I +DQ++ G+GT PL+ Y+FWPR DAWEELK  LESKPWI+++  I
Sbjct: 3   KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRI 62

Query: 198 ILLNQATDIINLWQQGG 215
            LLN+ T++IN WQ+ G
Sbjct: 63  ELLNKTTEVINYWQEEG 78

[Close]

BLAST of Csor.00g194680 vs. NCBI nr
Match: KAG6607038.1 (30S ribosomal protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 421 bits (1082), Expect = 3.00e-148
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MRLRLPLEFSLSRKTVAMMLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTT 60
           MRLRLPLEFSLSRKTVAMMLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTT
Sbjct: 1   MRLRLPLEFSLSRKTVAMMLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTT 60

Query: 61  ALSSPSSSISSCIADVYSVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSES 120
           ALSSPSSSISSCIADVYSVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSES
Sbjct: 61  ALSSPSSSISSCIADVYSVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSES 120

Query: 121 SPDKEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEE 180
           SPDKEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEE
Sbjct: 121 SPDKEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEE 180

Query: 181 LKVLLESKPWISQKQMIILLNQATDIINLWQQGGGSLA 218
           LKVLLESKPWISQKQMIILLNQATDIINLWQQGGGSLA
Sbjct: 181 LKVLLESKPWISQKQMIILLNQATDIINLWQQGGGSLA 218

[Close]

BLAST of Csor.00g194680 vs. NCBI nr
Match: XP_022948960.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 384 bits (986), Expect = 7.04e-134
Identity = 198/201 (98.51%), Postives = 198/201 (98.51%), Query Frame = 0


Query: 18  MMLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 77
           MMLSMAV L PNFNFCLNT TFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY
Sbjct: 1   MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 60

Query: 78  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 137
           SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP
Sbjct: 61  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120

Query: 138 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 197
           RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 198 ILLNQATDIINLWQQGGGSLA 218
           ILLNQATDIINLWQQGGGSLA
Sbjct: 181 ILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of Csor.00g194680 vs. NCBI nr
Match: XP_023522262.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 383 bits (984), Expect = 1.42e-133
Identity = 197/201 (98.01%), Postives = 199/201 (99.00%), Query Frame = 0


Query: 18  MMLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 77
           MMLSMAVQLQPN NFCLNT TFSSHNATSKPYQ+PF+LKQRTTALSSPSSSISSCIADVY
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPYQVPFSLKQRTTALSSPSSSISSCIADVY 60

Query: 78  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 137
           SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP
Sbjct: 61  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120

Query: 138 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 197
           RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 198 ILLNQATDIINLWQQGGGSLA 218
           ILLNQATDIINLWQQGGGSLA
Sbjct: 181 ILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of Csor.00g194680 vs. NCBI nr
Match: XP_022997676.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 379 bits (974), Expect = 4.75e-132
Identity = 195/201 (97.01%), Postives = 198/201 (98.51%), Query Frame = 0


Query: 18  MMLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 77
           MMLSMAVQLQPN NFCLNT TFSSHNATSKP+Q+PFALKQRT ALSSPSSSISSCIADVY
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPHQVPFALKQRTNALSSPSSSISSCIADVY 60

Query: 78  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 137
           SVSGLKLRRQSF+TLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP
Sbjct: 61  SVSGLKLRRQSFKTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120

Query: 138 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 197
           RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 198 ILLNQATDIINLWQQGGGSLA 218
           ILLNQATDIINLWQQGGGSLA
Sbjct: 181 ILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of Csor.00g194680 vs. NCBI nr
Match: XP_022148098.1 (30S ribosomal protein 3, chloroplastic-like [Momordica charantia])

HSP 1 Score: 310 bits (794), Expect = 1.35e-104
Identity = 164/202 (81.19%), Postives = 174/202 (86.14%), Query Frame = 0


Query: 18  MMLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTTALSS--PSSSISSCIAD 77
           MMLSMAVQLQPN NFCLNT  F + NATSKP+Q+ F +KQRTTA  S  PSSS SSCIA 
Sbjct: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60

Query: 78  VYSVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPME 137
            +  SG K RRQ+FR L+VSA AAA +AV+A SESPV DDS S SSP KEKLGVVVKPME
Sbjct: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120

Query: 138 KPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 197
           K RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 198 MIILLNQATDIINLWQQGGGSL 217
           MIILLNQATDIINLWQQGGG+L
Sbjct: 181 MIILLNQATDIINLWQQGGGNL 202

[Close]

BLAST of Csor.00g194680 vs. ExPASy TrEMBL
Match: A0A6J1GBD3 (30S ribosomal protein 3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111452451 PE=3 SV=1)

HSP 1 Score: 384 bits (986), Expect = 3.41e-134
Identity = 198/201 (98.51%), Postives = 198/201 (98.51%), Query Frame = 0


Query: 18  MMLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 77
           MMLSMAV L PNFNFCLNT TFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY
Sbjct: 1   MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 60

Query: 78  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 137
           SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP
Sbjct: 61  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120

Query: 138 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 197
           RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 198 ILLNQATDIINLWQQGGGSLA 218
           ILLNQATDIINLWQQGGGSLA
Sbjct: 181 ILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of Csor.00g194680 vs. ExPASy TrEMBL
Match: A0A6J1K853 (30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492568 PE=3 SV=1)

HSP 1 Score: 379 bits (974), Expect = 2.30e-132
Identity = 195/201 (97.01%), Postives = 198/201 (98.51%), Query Frame = 0


Query: 18  MMLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 77
           MMLSMAVQLQPN NFCLNT TFSSHNATSKP+Q+PFALKQRT ALSSPSSSISSCIADVY
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPHQVPFALKQRTNALSSPSSSISSCIADVY 60

Query: 78  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 137
           SVSGLKLRRQSF+TLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP
Sbjct: 61  SVSGLKLRRQSFKTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120

Query: 138 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 197
           RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 198 ILLNQATDIINLWQQGGGSLA 218
           ILLNQATDIINLWQQGGGSLA
Sbjct: 181 ILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of Csor.00g194680 vs. ExPASy TrEMBL
Match: A0A6J1D356 (30S ribosomal protein 3, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016859 PE=3 SV=1)

HSP 1 Score: 310 bits (794), Expect = 6.53e-105
Identity = 164/202 (81.19%), Postives = 174/202 (86.14%), Query Frame = 0


Query: 18  MMLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTTALSS--PSSSISSCIAD 77
           MMLSMAVQLQPN NFCLNT  F + NATSKP+Q+ F +KQRTTA  S  PSSS SSCIA 
Sbjct: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60

Query: 78  VYSVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPME 137
            +  SG K RRQ+FR L+VSA AAA +AV+A SESPV DDS S SSP KEKLGVVVKPME
Sbjct: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120

Query: 138 KPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 197
           K RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 198 MIILLNQATDIINLWQQGGGSL 217
           MIILLNQATDIINLWQQGGG+L
Sbjct: 181 MIILLNQATDIINLWQQGGGNL 202

[Close]

BLAST of Csor.00g194680 vs. ExPASy TrEMBL
Match: A0A0A0L9T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1)

HSP 1 Score: 301 bits (771), Expect = 2.93e-101
Identity = 160/211 (75.83%), Postives = 178/211 (84.36%), Query Frame = 0


Query: 8   EFSLSRKTVAMMLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTTALSSPSS 67
            FS S   ++MMLSMAVQLQPN NFC NT  F++  A SKP++LPFA++QRTTA      
Sbjct: 12  SFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTA-SKPFKLPFAVRQRTTA------ 71

Query: 68  SISSCIADVYSVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKL 127
             SSCI + ++V GL+LRRQ+FRT ++SASAA  +AV+A SE  VADDS S SSP KEKL
Sbjct: 72  --SSCIPNFHTVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKL 131

Query: 128 GVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLES 187
           GVVVKPMEKPRLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLES
Sbjct: 132 GVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLES 191

Query: 188 KPWISQKQMIILLNQATDIINLWQQGGGSLA 218
           KPWISQKQMIILLNQATDIINLWQQGGG+LA
Sbjct: 192 KPWISQKQMIILLNQATDIINLWQQGGGNLA 213

[Close]

BLAST of Csor.00g194680 vs. ExPASy TrEMBL
Match: A0A1S3CF24 (30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500153 PE=3 SV=1)

HSP 1 Score: 298 bits (762), Expect = 3.32e-100
Identity = 158/201 (78.61%), Postives = 172/201 (85.57%), Query Frame = 0


Query: 18  MMLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 77
           MMLSMAVQLQPN +FC NT  F++  A SKP+QLPFA+KQRTTA        SSCI + +
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTTA--------SSCIPNFH 60

Query: 78  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 137
           SV GLKLRRQ+ RT ++SASA + +AV+A SES V DDS S SSP KEKLGVVVKPMEKP
Sbjct: 61  SVFGLKLRRQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPMEKP 120

Query: 138 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 197
           RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 198 ILLNQATDIINLWQQGGGSLA 218
           ILLNQATDIINLWQQGGG+LA
Sbjct: 181 ILLNQATDIINLWQQGGGNLA 192

[Close]

BLAST of Csor.00g194680 vs. TAIR 10
Match: AT5G15760.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 162.9 bits (411), Expect = 2.8e-40
Identity = 74/102 (72.55%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 118 SESSP-DKEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKD 177
           SES P  K+K+ V+VKP+EKP++VLKF+WM+K+IG+ LD MIPG GTIPLSPYYFWPRKD
Sbjct: 82  SESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKD 141

Query: 178 AWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGSLA 219
           AWEELK LLESKPWIS+   + LLNQATDIINLWQ  GG L+
Sbjct: 142 AWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSGGDLS 183

[Close]

BLAST of Csor.00g194680 vs. TAIR 10
Match: AT1G68590.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-39
Identity = 80/131 (61.07%), Postives = 98/131 (74.81%), Query Frame = 0


Query: 87  QSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKPRLVLKFIWM 146
           Q+ + + V        A +  +   V     S+++P  ++   VVKP EK R+VLKF+WM
Sbjct: 35  QTTKPISVKRKIITLAAPETLTAETVTGIDTSDNTP--QQTIKVVKPDEKSRVVLKFVWM 94

Query: 147 EKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 206
           EKNIG+GLDQ +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDI
Sbjct: 95  EKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDI 154

Query: 207 INLWQQGGGSL 218
           INLWQQ GG+L
Sbjct: 155 INLWQQSGGNL 163

[Close]

BLAST of Csor.00g194680 vs. TAIR 10
Match: AT1G68590.2 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 159.1 bits (401), Expect = 4.1e-39
Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 87  QSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKPRLVLKFIWM 146
           Q+ + + V        A +  +   V     S+++P +      +KP EK R+VLKF+WM
Sbjct: 35  QTTKPISVKRKIITLAAPETLTAETVTGIDTSDNTPQQ-----TIKPDEKSRVVLKFVWM 94

Query: 147 EKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 206
           EKNIG+GLDQ +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDI
Sbjct: 95  EKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDI 154

Query: 207 INLWQQGGGSL 218
           INLWQQ GG+L
Sbjct: 155 INLWQQSGGNL 160

The following BLAST results are available for this feature:

BLAST of Csor.00g194680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82412	1.6e-48	57.00	30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=...	[more]
O48609	2.5e-41	54.49	30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 ...	[more]
Q9LFV0	4.0e-39	72.55	30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
Q9SX22	2.0e-38	61.07	30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
P51351	2.2e-21	55.84	Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=...	[more]

BLAST of Csor.00g194680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607038.1	3.00e-148	100.00	30S ribosomal protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022948960.1	7.04e-134	98.51	30S ribosomal protein 3, chloroplastic-like [Cucurbita moschata]	[more]
XP_023522262.1	1.42e-133	98.01	30S ribosomal protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997676.1	4.75e-132	97.01	30S ribosomal protein 3, chloroplastic-like [Cucurbita maxima]	[more]
XP_022148098.1	1.35e-104	81.19	30S ribosomal protein 3, chloroplastic-like [Momordica charantia]	[more]

BLAST of Csor.00g194680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GBD3	3.41e-134	98.51	30S ribosomal protein 3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1K853	2.30e-132	97.01	30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1D356	6.53e-105	81.19	30S ribosomal protein 3, chloroplastic-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A0A0L9T8	2.93e-101	75.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1	[more]
A0A1S3CF24	3.32e-100	78.61	30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500...	[more]

BLAST of Csor.00g194680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15760.1	2.8e-40	72.55	Ribosomal protein PSRP-3/Ycf65	[more]
AT1G68590.1	1.4e-39	61.07	Ribosomal protein PSRP-3/Ycf65	[more]
AT1G68590.2	4.1e-39	59.54	Ribosomal protein PSRP-3/Ycf65	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038447	PSRP-3/Ycf65 superfamily	GENE3D	3.30.390.140		coord: 138..216 e-value: 1.9E-32 score: 113.2
IPR006924	Ribosomal protein PSRP-3/Ycf65	PFAM	PF04839	PSRP-3_Ycf65	coord: 166..212 e-value: 1.3E-26 score: 92.5
IPR006924	Ribosomal protein PSRP-3/Ycf65	PANTHER	PTHR35108	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 19..218
None	No IPR available	PANTHER	PTHR35108:SF1	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 19..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g194680.m01	Csor.00g194680.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups
molecular_function	GO:0003735	structural constituent of ribosome