Csor.00g194080 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g194080
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionhydroxyproline-rich glycoprotein family protein
LocationCsor_Chr01: 2234645 .. 2235343 (-)
RNA-Seq ExpressionCsor.00g194080
SyntenyCsor.00g194080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTGCGACTGAACCAACCATTCCCACAACCTCAACTCAGTCAAAACCTGTAGATTCCGAACAACAATCTGAAACTTCCGGCGCCGGCGAAACGACGGCGACCCCAGAACTTGAAACGCCCATAAACGGAACCCCAGATCGAGAGAAGAAGGGAAAAGGCCAAGACCAAATGGAAAGTTCGAAATGTGAGTGTAAAACGCCAACCCCTGATGAGAAAACAGAGGAAAAACAGAGGATTTTGGTCCCTGTTAATGGTTTGATGATGGATCGATTGAAGGTGCCGAAGAGCCCGAACGTGGCTGGAGAAGCTAAACAAAGAGGGGGCATTGCATTGCCCAAGAATGGTACTCCGAATCGGCTGAAAGTGCCGAAAGCATTCAAATATCACGAAAGGTAATGGCTTAGAAGTGTGAGTTTTTGGTGTCCGATGTGAAGAGTGTTGAATTTGAAAGTGGGGATTCGTTGTTGTAGGTATACAAGTCCGACGGATTTGATGATGTCGCCTATCACCAAAGGCCTTCTCGCCAGAACCAGGAAAGGGGCTGTCCCTTCCAAGGTTAGCTGTCTTCTTTCTCTTACTCTTTGTTATAATTTTTCATTCTTTTAGATTAAGATGTTTGAAGGGTTTTGTGTTCTTGTTCTGTTGATGCAGATGCATGAGCTCAGAATTTCAGAGATGAGTCTTCATAGCTGA

mRNA sequence

ATGGAGATTGCGACTGAACCAACCATTCCCACAACCTCAACTCAGTCAAAACCTGTAGATTCCGAACAACAATCTGAAACTTCCGGCGCCGGCGAAACGACGGCGACCCCAGAACTTGAAACGCCCATAAACGGAACCCCAGATCGAGAGAAGAAGGGAAAAGGCCAAGACCAAATGGAAAGTTCGAAATGTGAGTGTAAAACGCCAACCCCTGATGAGAAAACAGAGGAAAAACAGAGGATTTTGGTCCCTGTTAATGGTTTGATGATGGATCGATTGAAGGTGCCGAAGAGCCCGAACGTGGCTGGAGAAGCTAAACAAAGAGGGGGCATTGCATTGCCCAAGAATGGTACTCCGAATCGGCTGAAAGTGCCGAAAGCATTCAAATATCACGAAAGGTATACAAGTCCGACGGATTTGATGATGTCGCCTATCACCAAAGGCCTTCTCGCCAGAACCAGGAAAGGGGCTGTCCCTTCCAAGATGCATGAGCTCAGAATTTCAGAGATGAGTCTTCATAGCTGA

Coding sequence (CDS)

ATGGAGATTGCGACTGAACCAACCATTCCCACAACCTCAACTCAGTCAAAACCTGTAGATTCCGAACAACAATCTGAAACTTCCGGCGCCGGCGAAACGACGGCGACCCCAGAACTTGAAACGCCCATAAACGGAACCCCAGATCGAGAGAAGAAGGGAAAAGGCCAAGACCAAATGGAAAGTTCGAAATGTGAGTGTAAAACGCCAACCCCTGATGAGAAAACAGAGGAAAAACAGAGGATTTTGGTCCCTGTTAATGGTTTGATGATGGATCGATTGAAGGTGCCGAAGAGCCCGAACGTGGCTGGAGAAGCTAAACAAAGAGGGGGCATTGCATTGCCCAAGAATGGTACTCCGAATCGGCTGAAAGTGCCGAAAGCATTCAAATATCACGAAAGGTATACAAGTCCGACGGATTTGATGATGTCGCCTATCACCAAAGGCCTTCTCGCCAGAACCAGGAAAGGGGCTGTCCCTTCCAAGATGCATGAGCTCAGAATTTCAGAGATGAGTCTTCATAGCTGA

Protein sequence

MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
Homology
BLAST of Csor.00g194080 vs. NCBI nr
Match: KAG6607098.1 (hypothetical protein SDJN03_00440, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036787.1 hypothetical protein SDJN02_00407 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 336 bits (861), Expect = 5.20e-116
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0

Query: 1   MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQME 60
           MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQME
Sbjct: 1   MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQME 60

Query: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPN 120
           SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPN
Sbjct: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPN 120

Query: 121 RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS 174
           RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
Sbjct: 121 RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS 174

BLAST of Csor.00g194080 vs. NCBI nr
Match: XP_022948389.1 (uncharacterized protein LOC111452080 [Cucurbita moschata])

HSP 1 Score: 330 bits (847), Expect = 7.10e-114
Identity = 172/174 (98.85%), Postives = 172/174 (98.85%), Query Frame = 0

Query: 1   MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQME 60
           MEIATEPTIPTT TQSKPVDSEQQSETSGAGETTAT ELETPINGTPDREKKGKGQDQME
Sbjct: 1   MEIATEPTIPTTPTQSKPVDSEQQSETSGAGETTATRELETPINGTPDREKKGKGQDQME 60

Query: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPN 120
           SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPN
Sbjct: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPN 120

Query: 121 RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS 174
           RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
Sbjct: 121 RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS 174

BLAST of Csor.00g194080 vs. NCBI nr
Match: XP_023525350.1 (uncharacterized protein LOC111788976 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325 bits (834), Expect = 6.81e-112
Identity = 168/174 (96.55%), Postives = 172/174 (98.85%), Query Frame = 0

Query: 1   MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQME 60
           MEIATEPTIPTT TQSKPVDSEQQSETSGAGETTATPELETPI+GTPDREKKGKG++Q E
Sbjct: 1   MEIATEPTIPTTPTQSKPVDSEQQSETSGAGETTATPELETPIDGTPDREKKGKGENQKE 60

Query: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPN 120
           SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALP+NGTPN
Sbjct: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPRNGTPN 120

Query: 121 RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS 174
           RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
Sbjct: 121 RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS 174

BLAST of Csor.00g194080 vs. NCBI nr
Match: XP_022998048.1 (uncharacterized protein LOC111492813 [Cucurbita maxima])

HSP 1 Score: 325 bits (832), Expect = 1.38e-111
Identity = 168/174 (96.55%), Postives = 169/174 (97.13%), Query Frame = 0

Query: 1   MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQME 60
           MEIATEP IPTT TQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGK Q+QME
Sbjct: 1   MEIATEPAIPTTPTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKAQNQME 60

Query: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPN 120
           SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGE KQRGGIA PKNGTPN
Sbjct: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEVKQRGGIAFPKNGTPN 120

Query: 121 RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS 174
           RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
Sbjct: 121 RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS 174

BLAST of Csor.00g194080 vs. NCBI nr
Match: XP_022155023.1 (uncharacterized protein LOC111022170 [Momordica charantia])

HSP 1 Score: 179 bits (453), Expect = 1.58e-53
Identity = 119/204 (58.33%), Postives = 133/204 (65.20%), Query Frame = 0

Query: 1   MEIATEPTIPTTSTQSKPVD-------SEQQSETSGAG---------------------- 60
           MEI  + +IP++  QS+  D       S+QQ E SGAG                      
Sbjct: 1   MEIPIQASIPSSPNQSECTDFESKLTISDQQPEISGAGDGDGLLKHPESPAQIGKLTPAG 60

Query: 61  ETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTE---EKQRILVPVNGL 120
           ET ATPE ETP      +++K + Q+Q E S  E KT TP EK E   EK+RILVP NG 
Sbjct: 61  ETPATPEFETP------KKEKARSQNQSEKSNSEMKTATPVEKAEDETEKKRILVPKNG- 120

Query: 121 MMDRLKVPKSPNVAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKG 172
            MDRLKVPKSPN AG+ K   GI LPKNGTPNRLKVPKAFKY ERY SPTDLMMSPI+KG
Sbjct: 121 SMDRLKVPKSPNPAGKVKF-SGIELPKNGTPNRLKVPKAFKYPERYMSPTDLMMSPISKG 180

BLAST of Csor.00g194080 vs. ExPASy TrEMBL
Match: A0A6J1G9R7 (uncharacterized protein LOC111452080 OS=Cucurbita moschata OX=3662 GN=LOC111452080 PE=4 SV=1)

HSP 1 Score: 330 bits (847), Expect = 3.44e-114
Identity = 172/174 (98.85%), Postives = 172/174 (98.85%), Query Frame = 0

Query: 1   MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQME 60
           MEIATEPTIPTT TQSKPVDSEQQSETSGAGETTAT ELETPINGTPDREKKGKGQDQME
Sbjct: 1   MEIATEPTIPTTPTQSKPVDSEQQSETSGAGETTATRELETPINGTPDREKKGKGQDQME 60

Query: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPN 120
           SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPN
Sbjct: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPN 120

Query: 121 RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS 174
           RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
Sbjct: 121 RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS 174

BLAST of Csor.00g194080 vs. ExPASy TrEMBL
Match: A0A6J1KFQ1 (uncharacterized protein LOC111492813 OS=Cucurbita maxima OX=3661 GN=LOC111492813 PE=4 SV=1)

HSP 1 Score: 325 bits (832), Expect = 6.66e-112
Identity = 168/174 (96.55%), Postives = 169/174 (97.13%), Query Frame = 0

Query: 1   MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQME 60
           MEIATEP IPTT TQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGK Q+QME
Sbjct: 1   MEIATEPAIPTTPTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKAQNQME 60

Query: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPN 120
           SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGE KQRGGIA PKNGTPN
Sbjct: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEVKQRGGIAFPKNGTPN 120

Query: 121 RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS 174
           RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
Sbjct: 121 RLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS 174

BLAST of Csor.00g194080 vs. ExPASy TrEMBL
Match: A0A6J1DLV5 (uncharacterized protein LOC111022170 OS=Momordica charantia OX=3673 GN=LOC111022170 PE=4 SV=1)

HSP 1 Score: 179 bits (453), Expect = 7.67e-54
Identity = 119/204 (58.33%), Postives = 133/204 (65.20%), Query Frame = 0

Query: 1   MEIATEPTIPTTSTQSKPVD-------SEQQSETSGAG---------------------- 60
           MEI  + +IP++  QS+  D       S+QQ E SGAG                      
Sbjct: 1   MEIPIQASIPSSPNQSECTDFESKLTISDQQPEISGAGDGDGLLKHPESPAQIGKLTPAG 60

Query: 61  ETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTE---EKQRILVPVNGL 120
           ET ATPE ETP      +++K + Q+Q E S  E KT TP EK E   EK+RILVP NG 
Sbjct: 61  ETPATPEFETP------KKEKARSQNQSEKSNSEMKTATPVEKAEDETEKKRILVPKNG- 120

Query: 121 MMDRLKVPKSPNVAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKG 172
            MDRLKVPKSPN AG+ K   GI LPKNGTPNRLKVPKAFKY ERY SPTDLMMSPI+KG
Sbjct: 121 SMDRLKVPKSPNPAGKVKF-SGIELPKNGTPNRLKVPKAFKYPERYMSPTDLMMSPISKG 180

BLAST of Csor.00g194080 vs. ExPASy TrEMBL
Match: A0A5A7UZK0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00200 PE=4 SV=1)

HSP 1 Score: 156 bits (394), Expect = 4.58e-45
Identity = 89/117 (76.07%), Postives = 95/117 (81.20%), Query Frame = 0

Query: 65  ECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAG-EAK---QR---GGIALPKNG 124
           ECKTPTPDEKT++K+RILVP NG  MDR KVPKSP     E K   QR   GGI LPKNG
Sbjct: 72  ECKTPTPDEKTDKKERILVPKNG-SMDRSKVPKSPGKVNLECKTPTQRVKIGGIELPKNG 131

Query: 125 TPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS 174
           TPNRLK+P AFKY ERY SPTDLM+SPI+KGLLARTRKGAVPSKMHELR SEMSL S
Sbjct: 132 TPNRLKLPIAFKYPERYKSPTDLMISPISKGLLARTRKGAVPSKMHELRNSEMSLLS 187

BLAST of Csor.00g194080 vs. ExPASy TrEMBL
Match: A0A1S3CI15 (uncharacterized protein LOC103501189 OS=Cucumis melo OX=3656 GN=LOC103501189 PE=4 SV=1)

HSP 1 Score: 156 bits (394), Expect = 4.58e-45
Identity = 89/117 (76.07%), Postives = 95/117 (81.20%), Query Frame = 0

Query: 65  ECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAG-EAK---QR---GGIALPKNG 124
           ECKTPTPDEKT++K+RILVP NG  MDR KVPKSP     E K   QR   GGI LPKNG
Sbjct: 72  ECKTPTPDEKTDKKERILVPKNG-SMDRSKVPKSPGKVNLECKTPTQRVKIGGIELPKNG 131

Query: 125 TPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS 174
           TPNRLK+P AFKY ERY SPTDLM+SPI+KGLLARTRKGAVPSKMHELR SEMSL S
Sbjct: 132 TPNRLKLPIAFKYPERYKSPTDLMISPISKGLLARTRKGAVPSKMHELRNSEMSLLS 187

BLAST of Csor.00g194080 vs. TAIR 10
Match: AT3G02120.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-13
Identity = 48/117 (41.03%), Postives = 61/117 (52.14%), Query Frame = 0

Query: 59  MESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALP--KN 118
           ME  +   +TP    KT+   R +   N         P+S         R     P  K 
Sbjct: 1   MELQQSNLETPL---KTQHDHRKITTSNPESSPPRPFPESSRKHDSPPPRASTNEPMKKI 60

Query: 119 GTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGA---VPSKMHELRISEM 171
           GTP RL+VP AFKY ERY SPTD MMSP+TKGLLARTRK +   +P   ++ +I E+
Sbjct: 61  GTPERLRVPIAFKYPERYRSPTDAMMSPVTKGLLARTRKSSGSLIPPSFNQTKIQEL 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6607098.15.20e-116100.00hypothetical protein SDJN03_00440, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022948389.17.10e-11498.85uncharacterized protein LOC111452080 [Cucurbita moschata][more]
XP_023525350.16.81e-11296.55uncharacterized protein LOC111788976 [Cucurbita pepo subsp. pepo][more]
XP_022998048.11.38e-11196.55uncharacterized protein LOC111492813 [Cucurbita maxima][more]
XP_022155023.11.58e-5358.33uncharacterized protein LOC111022170 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1G9R73.44e-11498.85uncharacterized protein LOC111452080 OS=Cucurbita moschata OX=3662 GN=LOC1114520... [more]
A0A6J1KFQ16.66e-11296.55uncharacterized protein LOC111492813 OS=Cucurbita maxima OX=3661 GN=LOC111492813... [more]
A0A6J1DLV57.67e-5458.33uncharacterized protein LOC111022170 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A5A7UZK04.58e-4576.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CI154.58e-4576.07uncharacterized protein LOC103501189 OS=Cucumis melo OX=3656 GN=LOC103501189 PE=... [more]
Match NameE-valueIdentityDescription
AT3G02120.13.1e-1341.03hydroxyproline-rich glycoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..80
NoneNo IPR availablePANTHERPTHR36747HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEINcoord: 66..171

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g194080.m01Csor.00g194080.m01mRNA