Csor.00g192600 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g192600
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	methyl-CpG-binding domain-containing protein 5-like
Location	Csor_Chr01: 3153616 .. 3155972 (+)
RNA-Seq Expression	Csor.00g192600
Synteny	Csor.00g192600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGGTTCCACCCGACCCGACTTACCTTCTCCCCACCACTTCCCTCCCGACCCTCTCCTCTCCTCTGGCTCCTTCATCGACTCCTCCACCGCTCGATGCGGAACCCTACCTTCTTCTCCCGACTACGCCCGAGATCTTGACGGGAATCATCGCAACAAGCCTGACACCTCCGCCACTCTCCGATCTCCATTGCCTGCTGACCCTCTCAACCCTAAGAAGCTTCCTCCCGATTCTCCTACTCCAGGAAATGGAGATTCTTCGGCGCCCAAGAAGGTGTCCGCCTCCAGAGGAACCGACGCCTCCCCCAAATCCGCCTTATCGGAAAGGCCTAATTGGCTCCCAACTGGCTGGGTCGTGGAAGATAGAGTTCGCGCCTCCGGTGCTACAGCTGGAACGGTTGATAAGGTGAATTGATTCCTTCTCTTATGCCTTCAATCCTTTACGAATGTTCCATTTCTTAGTTCATTCTCTTGTCTGGTGGTTCTGAGGAATATGTTTTGGTAATTAATCGACCATGCAAGTATTAGTCTATGCCTCTGGCTACTGACCTTTTTCTCTGCAATTTTATGTTTGACGATAGAACAGGGTCTTACTGTCTTTTATTATTATTATTTTTTCTTTCTACTCTACCTGTTTGACAATCGGTTTAGAATTTTCAACCAGTAATGGATGATTTTTTGTGGTACTGTTACGTTTACTCCTACTGCGTTGGAAACCTCGGATAAGAACATGAACCAATCACAAGAAATGCTCATTGATTAACGAAAATGATCTTTTGTTTTTGCCTTAAAGGGTTGGTTGTACCATTCCTTCTCAGTTGTTCTCCTATCAATTCTGGAAAGAAAGAGTTATATCAAGTAGTAAGGATTTAGTAACATTCTGGATGGGTGATCATCTGAAAAATGGATCACTAGCTAAACTCTGTTATATTGATGGATACTGCAGTTTTAGTTACCTATTTGGTGATTAAAAAGTTCAATAGGAGCAAGTAAACTAAAGGGATTCATTTCATCCACATGGTCAGGGGTCTTCCGTAGATTTGTTGGAGTTTTTTTGTCCTCTATTTGGTATGGCATTTAATTATGTTCATGTCCTTGCTTTTGAATCAGCTTATTTGACAATCCAAGCAATTCTGTCTCGCAGTTACTTAGAACAAACTTTCTTGGTATTTTTCTCTGGATAGTGAACAAGACTCCACGAACTTTGATATAGATTAGGTGCTTCTTTGGATTTTAGTATTCTAGCTAACTTTGCACTTATATGAATTCAATTAGCATAGCAGAGTTTGGTTGTTAGGATGGAGACCATTGGAAAAAGCTTTACACAAACCTCCACTGCTGTGTTGATAACCAGTTCATAAATGGTCTGGGTCGAATTTGTAGAATAATGTTCATCATTTGATCTCTCCTTGCGTTTTGGTGAATAGCTTTGGACTCGATATTTGTAGATTTCAAATGCTCTTGCTGGAATCGTGCACCTCATAGGATATGTGGCTGGTGCTTTGTGCTTGGCATATGATGCTTCACTAATTGTCATGTTTGAGATGGGTTCTACCTTAGTTTTGTATTCATGAGTAGCTTTGTTTAAAACCATATTCACATTGCTGATAGACAAAACAAGTGCAAGCAATCAAGTACGGTCACAAGTACCATCTAGCATTTAATTATTGAGAAAGAGTTCGTATGGAAATTTGCTTATGAATTGAGTTCCTTTCTCTTTTTTCCTTTTGTTTTTGTCATGTCGTTCTGAATTAATTGTGAGCATGCTTGGGCCCCATTTATTACTTGAGGTTCCCCTTTCCTTTTATTCCGTTTTAAATGTTTATTGAACAAACAAACAGAAAAGAATGTTGAGAAAAATCTAATATCCCCATGTCCCTTGCAGTACTACTTTGACCCAAACTCAGGTCGTCGCTTCCGGTCTAAGATTGAAGTTCTTTACTTTCTCGAAACAGGAACGTTAAGGAAACGGAAGAAATCTTTAGACGGCAATGTGAGTCGAAAGCTAACACTCCTTCTTTTTAGCACCAAATAGATATTCAGATCTTCTCATCAATTTTTCACTTTTTCTGATTTGCAACTCTGCAGTCTGCTGATGGCTCCGAAGAACCAAAGAGCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTGCCTGAAAAGGTCGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCCTGGACGCCGTTTATTAACAACGAGAAAGTACCTGAATCGACTAAACGCGAATGGGTAGCAGCCTTTCAACTCCTCGGGCGATCGAAAGTCTGA

mRNA sequence

ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGGTTCCACCCGACCCGACTTACCTTCTCCCCACCACTTCCCTCCCGACCCTCTCCTCTCCTCTGGCTCCTTCATCGACTCCTCCACCGCTCGATGCGGAACCCTACCTTCTTCTCCCGACTACGCCCGAGATCTTGACGGGAATCATCGCAACAAGCCTGACACCTCCGCCACTCTCCGATCTCCATTGCCTGCTGACCCTCTCAACCCTAAGAAGCTTCCTCCCGATTCTCCTACTCCAGGAAATGGAGATTCTTCGGCGCCCAAGAAGGTGTCCGCCTCCAGAGGAACCGACGCCTCCCCCAAATCCGCCTTATCGGAAAGGCCTAATTGGCTCCCAACTGGCTGGGTCGTGGAAGATAGAGTTCGCGCCTCCGGTGCTACAGCTGGAACGGTTGATAAGTACTACTTTGACCCAAACTCAGGTCGTCGCTTCCGGTCTAAGATTGAAGTTCTTTACTTTCTCGAAACAGGAACGTTAAGGAAACGGAAGAAATCTTTAGACGGCAATTCTGCTGATGGCTCCGAAGAACCAAAGAGCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTGCCTGAAAAGGTCGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCCTGGACGCCGTTTATTAACAACGAGAAAGTACCTGAATCGACTAAACGCGAATGGGTAGCAGCCTTTCAACTCCTCGGGCGATCGAAAGTCTGA

Coding sequence (CDS)

ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGGTTCCACCCGACCCGACTTACCTTCTCCCCACCACTTCCCTCCCGACCCTCTCCTCTCCTCTGGCTCCTTCATCGACTCCTCCACCGCTCGATGCGGAACCCTACCTTCTTCTCCCGACTACGCCCGAGATCTTGACGGGAATCATCGCAACAAGCCTGACACCTCCGCCACTCTCCGATCTCCATTGCCTGCTGACCCTCTCAACCCTAAGAAGCTTCCTCCCGATTCTCCTACTCCAGGAAATGGAGATTCTTCGGCGCCCAAGAAGGTGTCCGCCTCCAGAGGAACCGACGCCTCCCCCAAATCCGCCTTATCGGAAAGGCCTAATTGGCTCCCAACTGGCTGGGTCGTGGAAGATAGAGTTCGCGCCTCCGGTGCTACAGCTGGAACGGTTGATAAGTACTACTTTGACCCAAACTCAGGTCGTCGCTTCCGGTCTAAGATTGAAGTTCTTTACTTTCTCGAAACAGGAACGTTAAGGAAACGGAAGAAATCTTTAGACGGCAATTCTGCTGATGGCTCCGAAGAACCAAAGAGCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTGCCTGAAAAGGTCGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCCTGGACGCCGTTTATTAACAACGAGAAAGTACCTGAATCGACTAAACGCGAATGGGTAGCAGCCTTTCAACTCCTCGGGCGATCGAAAGTCTGA

Protein sequence

MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARDLDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSALSERPNWLPTGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQLLGRSKV

Homology

[Close]

BLAST of Csor.00g192600 vs. ExPASy Swiss-Prot
Match: Q9LTJ1 (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=MBD6 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.0e-30
Identity = 88/241 (36.51%), Postives = 117/241 (48.55%), Query Frame = 0


Query: 29  FPPDPLLSSGSFIDSSTARCGTLPSSPDYARDLDGNHRNKPDTSATLRSPLPADPLNPKK 88
           FPPDPLL+SG+FI  S+A  GTL SS                                 K
Sbjct: 9   FPPDPLLASGAFI--SSAGDGTLDSS--------------------------------AK 68

Query: 89  LPPDSPTPGNGDSSAPKKVSASRGTD-----ASPKSALSERP--NWLPTGWVVEDRVRAS 148
             P     G   S    ++  + GTD        KS     P  NWLP GW VED++R S
Sbjct: 69  RRPIQGGIGISGSGESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTS 128

Query: 149 GATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGN-------SADGSEEP 208
           GATAG+VDKYY++PN+GR+FRS+ EVLY+LE GT ++  K  +            GS   
Sbjct: 129 GATAGSVDKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRV 188

Query: 209 KSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQL 256
               +       PL+FDF N P+KV W + +  +E W P I + KV +S +R+W  AF  
Sbjct: 189 TRTATVPPPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTF 215

[Close]

BLAST of Csor.00g192600 vs. ExPASy Swiss-Prot
Match: Q9SNC0 (Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=MBD5 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.8e-28
Identity = 72/169 (42.60%), Postives = 92/169 (54.44%), Query Frame = 0


Query: 97  GNGDSSAPKKVSASRGTDASPKSALSERPNWLPTGWVVEDRVRASGATAGTVDKYYFDPN 156
           G   +  P +  A+     S K A     NWLP  W  E RVR SG  AGTVDK+Y++P 
Sbjct: 4   GTDQAQPPPENPATPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPI 63

Query: 157 SGRRFRSKIEVLYFLETGTLRKRKKSLDGNSADGSE----------EPKSKKSSSNAKSA 216
           +GR+FRSK EVLY+LE GT +K+      N    SE          + KS K  +     
Sbjct: 64  TGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPK 123

Query: 217 PLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQLL 256
           PLNFDF NVPEKV W   + S+EAW PFI + K+ ES  ++W   F L+
Sbjct: 124 PLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLV 172

[Close]

BLAST of Csor.00g192600 vs. NCBI nr
Match: KAG6607246.1 (Methyl-CpG-binding domain-containing protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 524 bits (1349), Expect = 1.49e-187
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPTGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLPTGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPTGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 260
           PESTKREWVAAFQLLGRSKV
Sbjct: 241 PESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Csor.00g192600 vs. NCBI nr
Match: KAG7036930.1 (Methyl-CpG-binding domain-containing protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 520 bits (1338), Expect = 7.10e-186
Identity = 258/260 (99.23%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDGNHRNKPDTSATLRSPLP DPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPTGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLP GWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 260
           PESTKREWVAAFQLLGRSKV
Sbjct: 241 PESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Csor.00g192600 vs. NCBI nr
Match: XP_022948611.1 (methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 519 bits (1336), Expect = 1.43e-185
Identity = 257/260 (98.85%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPTGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLP GWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 260
           PESTKREWVAAFQLLGRSK+
Sbjct: 241 PESTKREWVAAFQLLGRSKI 260

[Close]

BLAST of Csor.00g192600 vs. NCBI nr
Match: XP_023523162.1 (methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 515 bits (1327), Expect = 3.38e-184
Identity = 256/260 (98.46%), Postives = 256/260 (98.46%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDG HR KPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGTHRKKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPTGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLP GWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQE WTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEVWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 260
           PESTKREWVAAFQLLGRSKV
Sbjct: 241 PESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Csor.00g192600 vs. NCBI nr
Match: XP_022998336.1 (methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 515 bits (1326), Expect = 4.80e-184
Identity = 256/260 (98.46%), Postives = 257/260 (98.85%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDGNHR KPDTSATLRSPLPADPLNPKKL PDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPTGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LS+RPNWLP GWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 260
           PESTKREWVAAFQLLGRSKV
Sbjct: 241 PESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Csor.00g192600 vs. ExPASy TrEMBL
Match: A0A6J1G9P7 (methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452236 PE=4 SV=1)

HSP 1 Score: 519 bits (1336), Expect = 6.94e-186
Identity = 257/260 (98.85%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPTGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLP GWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 260
           PESTKREWVAAFQLLGRSK+
Sbjct: 241 PESTKREWVAAFQLLGRSKI 260

[Close]

BLAST of Csor.00g192600 vs. ExPASy TrEMBL
Match: A0A6J1K9Z4 (methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493004 PE=4 SV=1)

HSP 1 Score: 515 bits (1326), Expect = 2.32e-184
Identity = 256/260 (98.46%), Postives = 257/260 (98.85%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDGNHR KPDTSATLRSPLPADPLNPKKL PDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPTGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LS+RPNWLP GWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 260
           PESTKREWVAAFQLLGRSKV
Sbjct: 241 PESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Csor.00g192600 vs. ExPASy TrEMBL
Match: A0A6J1GAC7 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452236 PE=4 SV=1)

HSP 1 Score: 514 bits (1323), Expect = 7.17e-184
Identity = 257/262 (98.09%), Postives = 258/262 (98.47%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPTGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLP GWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240
           KSLDGN  SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE
Sbjct: 181 KSLDGNVKSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240

Query: 241 KVPESTKREWVAAFQLLGRSKV 260
           KVPESTKREWVAAFQLLGRSK+
Sbjct: 241 KVPESTKREWVAAFQLLGRSKI 262

[Close]

BLAST of Csor.00g192600 vs. ExPASy TrEMBL
Match: A0A6J1KC76 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493004 PE=4 SV=1)

HSP 1 Score: 510 bits (1313), Expect = 2.40e-182
Identity = 256/262 (97.71%), Postives = 257/262 (98.09%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDGNHR KPDTSATLRSPLPADPLNPKKL PDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPTGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LS+RPNWLP GWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240
           KSLDGN  SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE
Sbjct: 181 KSLDGNAMSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240

Query: 241 KVPESTKREWVAAFQLLGRSKV 260
           KVPESTKREWVAAFQLLGRSKV
Sbjct: 241 KVPESTKREWVAAFQLLGRSKV 262

[Close]

BLAST of Csor.00g192600 vs. ExPASy TrEMBL
Match: A0A6J1HLU8 (methyl-CpG-binding domain-containing protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464796 PE=4 SV=1)

HSP 1 Score: 402 bits (1033), Expect = 7.74e-140
Identity = 207/262 (79.01%), Postives = 224/262 (85.50%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSA GTS  DPDWPR+  TR +LP  +H PPDPLL +GSFIDSS ARCGTLPSSP+++RD
Sbjct: 1   MSAFGTSLSDPDWPRRDPTRFNLPFSNHLPPDPLLDAGSFIDSSAARCGTLPSSPNHSRD 60

Query: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LD NHR K +TS+TLRSP  ADPLN           GNGDS A KK+S SRGTDASPKSA
Sbjct: 61  LDLNHRKKAETSSTLRSPFRADPLNA----------GNGDSPATKKLSGSRGTDASPKSA 120

Query: 121 LSERPNWLPTGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
            SE+PNWLP GW++EDRVR SGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 SSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240
           KSLDGN  SADG EEPK+KKSS+NAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE
Sbjct: 181 KSLDGNGMSADGPEEPKNKKSSNNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240

Query: 241 KVPESTKREWVAAFQLLGRSKV 260
           KVP+STKREWVAAF+LL RSKV
Sbjct: 241 KVPQSTKREWVAAFKLLSRSKV 252

[Close]

BLAST of Csor.00g192600 vs. TAIR 10
Match: AT5G59380.1 (methyl-CPG-binding domain 6 )

HSP 1 Score: 132.1 bits (331), Expect = 6.4e-31
Identity = 88/241 (36.51%), Postives = 117/241 (48.55%), Query Frame = 0


Query: 29  FPPDPLLSSGSFIDSSTARCGTLPSSPDYARDLDGNHRNKPDTSATLRSPLPADPLNPKK 88
           FPPDPLL+SG+FI  S+A  GTL SS                                 K
Sbjct: 9   FPPDPLLASGAFI--SSAGDGTLDSS--------------------------------AK 68

Query: 89  LPPDSPTPGNGDSSAPKKVSASRGTD-----ASPKSALSERP--NWLPTGWVVEDRVRAS 148
             P     G   S    ++  + GTD        KS     P  NWLP GW VED++R S
Sbjct: 69  RRPIQGGIGISGSGESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTS 128

Query: 149 GATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGN-------SADGSEEP 208
           GATAG+VDKYY++PN+GR+FRS+ EVLY+LE GT ++  K  +            GS   
Sbjct: 129 GATAGSVDKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRV 188

Query: 209 KSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQL 256
               +       PL+FDF N P+KV W + +  +E W P I + KV +S +R+W  AF  
Sbjct: 189 TRTATVPPPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTF 215

[Close]

BLAST of Csor.00g192600 vs. TAIR 10
Match: AT3G46580.1 (methyl-CPG-binding domain protein 5 )

HSP 1 Score: 126.7 bits (317), Expect = 2.7e-29
Identity = 72/169 (42.60%), Postives = 92/169 (54.44%), Query Frame = 0


Query: 97  GNGDSSAPKKVSASRGTDASPKSALSERPNWLPTGWVVEDRVRASGATAGTVDKYYFDPN 156
           G   +  P +  A+     S K A     NWLP  W  E RVR SG  AGTVDK+Y++P 
Sbjct: 4   GTDQAQPPPENPATPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPI 63

Query: 157 SGRRFRSKIEVLYFLETGTLRKRKKSLDGNSADGSE----------EPKSKKSSSNAKSA 216
           +GR+FRSK EVLY+LE GT +K+      N    SE          + KS K  +     
Sbjct: 64  TGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPK 123

Query: 217 PLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQLL 256
           PLNFDF NVPEKV W   + S+EAW PFI + K+ ES  ++W   F L+
Sbjct: 124 PLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLV 172

[Close]

BLAST of Csor.00g192600 vs. TAIR 10
Match: AT5G59800.1 (methyl-CPG-binding domain 7 )

HSP 1 Score: 52.0 bits (123), Expect = 8.4e-07
Identity = 38/126 (30.16%), Postives = 57/126 (45.24%), Query Frame = 0


Query: 128 LPTGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEV-LYFLETGTLRKRKKSLDGN 187
           LP GW+VE++ R S   +  +D+ Y +P +G +FRS   V  Y +  G +     +LD  
Sbjct: 182 LPDGWIVEEKPRRS---SSHIDRSYIEPGTGNKFRSMAAVERYLISVGNI-----TLDSV 241

Query: 188 SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKR 247
           S   SE      + +  +      D  N P+KV+WVLT      +T  +    V    K 
Sbjct: 242 SMVHSERLPLLMNRNGIRFQSEVID-PNPPKKVKWVLTGSGGNMFTANVRGSNVSSLVKH 298

Query: 248 EWVAAF 253
            W  AF
Sbjct: 302 TWSEAF 298

The following BLAST results are available for this feature:

BLAST of Csor.00g192600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTJ1	9.0e-30	36.51	Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9SNC0	3.8e-28	42.60	Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Csor.00g192600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607246.1	1.49e-187	100.00	Methyl-CpG-binding domain-containing protein 6, partial [Cucurbita argyrosperma ...	[more]
KAG7036930.1	7.10e-186	99.23	Methyl-CpG-binding domain-containing protein 6, partial [Cucurbita argyrosperma ...	[more]
XP_022948611.1	1.43e-185	98.85	methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita moscha...	[more]
XP_023523162.1	3.38e-184	98.46	methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998336.1	4.80e-184	98.46	methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita maxima...	[more]

BLAST of Csor.00g192600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9P7	6.94e-186	98.85	methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita mosc...	[more]
A0A6J1K9Z4	2.32e-184	98.46	methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita maxi...	[more]
A0A6J1GAC7	7.17e-184	98.09	methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita mosc...	[more]
A0A6J1KC76	2.40e-182	97.71	methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxi...	[more]
A0A6J1HLU8	7.74e-140	79.01	methyl-CpG-binding domain-containing protein 5-like OS=Cucurbita moschata OX=366...	[more]

BLAST of Csor.00g192600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59380.1	6.4e-31	36.51	methyl-CPG-binding domain 6	[more]
AT3G46580.1	2.7e-29	42.60	methyl-CPG-binding domain protein 5	[more]
AT5G59800.1	8.4e-07	30.16	methyl-CPG-binding domain 7	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.890.10		coord: 95..209 e-value: 4.8E-21 score: 77.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..199
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 110..248
None	No IPR available	PANTHER	PTHR12396:SF46	METHYL-CPG BINDING DOMAIN PROTEIN-LIKE, ISOFORM C	coord: 110..248
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 121..218 e-value: 5.2E-14 score: 51.7
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 118..190 score: 14.993612
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 113..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g192600.m01	Csor.00g192600.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding