Csor.00g192470 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g192470
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RING-type domain-containing protein
Location	Csor_Chr05: 7301225 .. 7301974 (-)
RNA-Seq Expression	Csor.00g192470
Synteny	Csor.00g192470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAAGCTAGCATCGAACGCCTTCGCTGGCATTCGATCTAAGAATAACTCTGCTGTATCTAAGCAAGCTTTCTGGGAGTGCTCGGACGACGAGGTGTGCTCGGAAGACAGTAGAGATGAAGAATTGGAATGCCCAATATGCTGGGAATCTTTCAACATTGTGGAGAATGTGCCGTATGTCTTATGGTGTGGCCATACATTATGCAGAAATTGTGTATTAGGCCTTCAAGGGTATGTGCTGAAACTAGCAACTCGCCAAATCCGAATCCCGATCTTCATATCGTGCCCGTGGTGTCATCAGCTTTCCTTACGGGTCGTATACAAGGGGAACCTGAAGTTTCCCAGCAAGAACTTTTTTCTTCTTTGGATGGTTGAGAGCCTTAATGGCAATGAGGGAAAACTTGATCACCCCTTCAATGGGGATAATCAACCAGTTTTTTCTCTGCCTCCATCCGACGCCGATGCTTCTCAGAGGCATTCGTTTTTGGACGGTCGTGTTAGTCGCCACGGAATAGAGAGGCGACGACGGTTGTTTTCCTATGAACATTTAGATTGCGTCATCCATTTAATCTTCAAGTTTCTACTGGCTGTCATATTTGTTCTGATAGTAGTTTTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTTTACTTGCTAATAACTTTCCTTTTTGCATTGCCATCTTTGCTGATATTTTACATTTCACTCCATGCTTTGGAAAAGCTTATGAATGATATATCTTCATGA

mRNA sequence

ATGTGGAAGCTAGCATCGAACGCCTTCGCTGGCATTCGATCTAAGAATAACTCTGCTGTATCTAAGCAAGCTTTCTGGGAGTGCTCGGACGACGAGGTGTGCTCGGAAGACAGTAGAGATGAAGAATTGGAATGCCCAATATGCTGGGAATCTTTCAACATTGTGGAGAATGTGCCGTATGTCTTATGGTGTGGCCATACATTATGCAGAAATTGTGTATTAGGCCTTCAAGGGTATGTGCTGAAACTAGCAACTCGCCAAATCCGAATCCCGATCTTCATATCGTGCCCGTGGTGTCATCAGCTTTCCTTACGGGTCGTATACAAGGGGAACCTGAAGTTTCCCAGCAAGAACTTTTTTCTTCTTTGGATGGTTGAGAGCCTTAATGGCAATGAGGGAAAACTTGATCACCCCTTCAATGGGGATAATCAACCAGTTTTTTCTCTGCCTCCATCCGACGCCGATGCTTCTCAGAGGCATTCGTTTTTGGACGGTCGTGTTAGTCGCCACGGAATAGAGAGGCGACGACGGTTGTTTTCCTATGAACATTTAGATTGCGTCATCCATTTAATCTTCAAGTTTCTACTGGCTGTCATATTTGTTCTGATAGTAGTTTTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTTTACTTGCTAATAACTTTCCTTTTTGCATTGCCATCTTTGCTGATATTTTACATTTCACTCCATGCTTTGGAAAAGCTTATGAATGATATATCTTCATGA

Coding sequence (CDS)

ATGTGGAAGCTAGCATCGAACGCCTTCGCTGGCATTCGATCTAAGAATAACTCTGCTGTATCTAAGCAAGCTTTCTGGGAGTGCTCGGACGACGAGGTGTGCTCGGAAGACAGTAGAGATGAAGAATTGGAATGCCCAATATGCTGGGAATCTTTCAACATTGTGGAGAATGTGCCGTATGTCTTATGGTGTGGCCATACATTATGCAGAAATTGTGTATTAGGCCTTCAAGGGTATGTGCTGAAACTAGCAACTCGCCAAATCCGAATCCCGATCTTCATATCGTGCCCGTGGTGTCATCAGCTTTCCTTACGGGTCGTATACAAGGGGAACCTGAAGTTTCCCAGCAAGAACTTTTTTCTTCTTTGGATGGTTGAGAGCCTTAATGGCAATGAGGGAAAACTTGATCACCCCTTCAATGGGGATAATCAACCAGTTTTTTCTCTGCCTCCATCCGACGCCGATGCTTCTCAGAGGCATTCGTTTTTGGACGGTCGTGTTAGTCGCCACGGAATAGAGAGGCGACGACGGTTGTTTTCCTATGAACATTTAGATTGCGTCATCCATTTAATCTTCAAGTTTCTACTGGCTGTCATATTTGTTCTGATAGTAGTTTTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTTTACTTGCTAATAACTTTCCTTTTTGCATTGCCATCTTTGCTGATATTTTACATTTCACTCCATGCTTTGGAAAAGCTTATGAATGATATATCTTCATGA

Protein sequence

MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPYVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFFLLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFLDGRVSRHGIERRRRLFSYEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHALEKLMNDISS

Homology

[Close]

BLAST of Csor.00g192470 vs. ExPASy Swiss-Prot
Match: Q13049 (E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens OX=9606 GN=TRIM32 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 7.4e-05
Identity = 26/67 (38.81%), Postives = 36/67 (53.73%), Query Frame = 0


Query: 37  DSRDEELECPICWESFNIVENVPYVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISC 96
           D+  E LECPIC ESF   +  P +L CGHT+CR C       + KL    I     + C
Sbjct: 12  DALREVLECPICMESFTEEQLRPKLLHCGHTICRQC-------LEKLLASSIN---GVRC 68

Query: 97  PWCHQLS 104
           P+C +++
Sbjct: 72  PFCSKIT 68

[Close]

BLAST of Csor.00g192470 vs. ExPASy Swiss-Prot
Match: Q8CH72 (E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus OX=10090 GN=Trim32 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 7.4e-05
Identity = 26/67 (38.81%), Postives = 36/67 (53.73%), Query Frame = 0


Query: 37  DSRDEELECPICWESFNIVENVPYVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISC 96
           D+  E LECPIC ESF   +  P +L CGHT+CR C       + KL    I     + C
Sbjct: 13  DALREVLECPICMESFTEEQLRPKLLHCGHTICRQC-------LEKLLASSIN---GVRC 69

Query: 97  PWCHQLS 104
           P+C +++
Sbjct: 73  PFCSKIT 69

[Close]

BLAST of Csor.00g192470 vs. ExPASy Swiss-Prot
Match: Q8K0W3 (RING finger protein 208 OS=Mus musculus OX=10090 GN=Rnf208 PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 2.1e-04
Identity = 23/61 (37.70%), Postives = 31/61 (50.82%), Query Frame = 0


Query: 41  EELECPICWESFNIVENVPYVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCH 100
           E LECP C  ++N+ +  P VL C H++C  C+  L     K          FISCP CH
Sbjct: 143 EPLECPTCGHTYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYK--------FISCPTCH 195

Query: 101 Q 102
           +
Sbjct: 203 R 195

[Close]

BLAST of Csor.00g192470 vs. NCBI nr
Match: KAG6599030.1 (hypothetical protein SDJN03_08808, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 497 bits (1279), Expect = 3.00e-177
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFLDGRVSRHGIERRRRLFS 180
           LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFLDGRVSRHGIERRRRLFS
Sbjct: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFLDGRVSRHGIERRRRLFS 180

Query: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240
           YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL
Sbjct: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240

Query: 241 EKLMNDISS 249
           EKLMNDISS
Sbjct: 241 EKLMNDISS 249

[Close]

BLAST of Csor.00g192470 vs. NCBI nr
Match: XP_022946373.1 (uncharacterized protein LOC111450453 [Cucurbita moschata])

HSP 1 Score: 494 bits (1273), Expect = 2.47e-176
Identity = 248/249 (99.60%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFLDGRVSRHGIERRRRLFS 180
           LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSF DGRVSRHGIERRRRLFS
Sbjct: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFSDGRVSRHGIERRRRLFS 180

Query: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240
           YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL
Sbjct: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240

Query: 241 EKLMNDISS 249
           EKLMNDISS
Sbjct: 241 EKLMNDISS 249

[Close]

BLAST of Csor.00g192470 vs. NCBI nr
Match: KAG6599045.1 (hypothetical protein SDJN03_08823, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 493 bits (1270), Expect = 7.07e-176
Identity = 247/249 (99.20%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFLDGRVSRHGIERRRRLFS 180
           LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSF DGRVSRHGIERRRRLFS
Sbjct: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFSDGRVSRHGIERRRRLFS 180

Query: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240
           YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL
Sbjct: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240

Query: 241 EKLMNDISS 249
           EKLMNDI+S
Sbjct: 241 EKLMNDITS 249

[Close]

BLAST of Csor.00g192470 vs. NCBI nr
Match: KAG7029990.1 (hypothetical protein SDJN02_08334, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 491 bits (1265), Expect = 4.09e-175
Identity = 246/249 (98.80%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFLDGRVSRHGIERRRRLFS 180
           LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDA+ASQRHSF DGRVSRHGIERRRRLFS
Sbjct: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRVSRHGIERRRRLFS 180

Query: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240
           YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL
Sbjct: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240

Query: 241 EKLMNDISS 249
           EKLMNDI+S
Sbjct: 241 EKLMNDITS 249

[Close]

BLAST of Csor.00g192470 vs. NCBI nr
Match: XP_023547098.1 (uncharacterized protein LOC111806010 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 484 bits (1246), Expect = 3.23e-172
Identity = 241/249 (96.79%), Postives = 245/249 (98.39%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWKLASNAFAGI+SKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAFAGIQSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFI CPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFIPCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFLDGRVSRHGIERRRRLFS 180
           LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDA+ASQRHSF DGRVSRHGIERRRRLF 
Sbjct: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRVSRHGIERRRRLFC 180

Query: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240
           YEHLDCVIHL+FKFLL VIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL
Sbjct: 181 YEHLDCVIHLVFKFLLVVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240

Query: 241 EKLMNDISS 249
           EKLMNDI+S
Sbjct: 241 EKLMNDITS 249

[Close]

BLAST of Csor.00g192470 vs. ExPASy TrEMBL
Match: A0A6J1G3L5 (uncharacterized protein LOC111450453 OS=Cucurbita moschata OX=3662 GN=LOC111450453 PE=4 SV=1)

HSP 1 Score: 494 bits (1273), Expect = 1.19e-176
Identity = 248/249 (99.60%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFLDGRVSRHGIERRRRLFS 180
           LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSF DGRVSRHGIERRRRLFS
Sbjct: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFSDGRVSRHGIERRRRLFS 180

Query: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240
           YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL
Sbjct: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240

Query: 241 EKLMNDISS 249
           EKLMNDISS
Sbjct: 241 EKLMNDISS 249

[Close]

BLAST of Csor.00g192470 vs. ExPASy TrEMBL
Match: A0A6J1KAL8 (uncharacterized protein LOC111493743 OS=Cucurbita maxima OX=3661 GN=LOC111493743 PE=4 SV=1)

HSP 1 Score: 484 bits (1245), Expect = 2.22e-172
Identity = 242/249 (97.19%), Postives = 245/249 (98.39%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFLDGRVSRHGIERRRRLFS 180
           LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSF DGRV+RHGIERR  LFS
Sbjct: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFSDGRVNRHGIERRPWLFS 180

Query: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240
           YEHLDC+IHLIFKFLL VIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL
Sbjct: 181 YEHLDCLIHLIFKFLLVVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240

Query: 241 EKLMNDISS 249
           EKLMNDI+S
Sbjct: 241 EKLMNDITS 249

[Close]

BLAST of Csor.00g192470 vs. ExPASy TrEMBL
Match: A0A1S3CPH8 (uncharacterized protein LOC103503329 OS=Cucumis melo OX=3656 GN=LOC103503329 PE=4 SV=1)

HSP 1 Score: 392 bits (1006), Expect = 3.18e-136
Identity = 203/249 (81.53%), Postives = 212/249 (85.14%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWKLASNA AGIRSK NS V KQ FWECSDDEVCSE SRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAIAGIRSKKNSDVPKQVFWECSDDEVCSEASRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LC+NCVLGLQG VLKLATRQ+RIPI ISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQMRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFLDGRVSRHGIERRRRLFS 180
           LLWMVES NGNEGKLDH FN DNQ VFSLP              G V+      RRRLF 
Sbjct: 121 LLWMVESFNGNEGKLDHSFNSDNQSVFSLP-------------SGTVT----SERRRLFF 180

Query: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240
           Y HLDCVIHL+FKFLL VIFVLIVVFVIPGSALILLLYLLIT LFALPSLLIFY++LHAL
Sbjct: 181 YNHLDCVIHLVFKFLLTVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLALHAL 232

Query: 241 EKLMNDISS 249
           +KLMNDI+S
Sbjct: 241 DKLMNDITS 232

[Close]

BLAST of Csor.00g192470 vs. ExPASy TrEMBL
Match: A0A5A7TGX0 (Zf-RING_LisH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00120 PE=4 SV=1)

HSP 1 Score: 392 bits (1006), Expect = 3.18e-136
Identity = 203/249 (81.53%), Postives = 212/249 (85.14%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWKLASNA AGIRSK NS V KQ FWECSDDEVCSE SRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAIAGIRSKKNSDVPKQVFWECSDDEVCSEASRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LC+NCVLGLQG VLKLATRQ+RIPI ISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQMRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFLDGRVSRHGIERRRRLFS 180
           LLWMVES NGNEGKLDH FN DNQ VFSLP              G V+      RRRLF 
Sbjct: 121 LLWMVESFNGNEGKLDHSFNSDNQSVFSLP-------------SGTVT----SERRRLFF 180

Query: 181 YEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240
           Y HLDCVIHL+FKFLL VIFVLIVVFVIPGSALILLLYLLIT LFALPSLLIFY++LHAL
Sbjct: 181 YNHLDCVIHLVFKFLLTVIFVLIVVFVIPGSALILLLYLLITLLFALPSLLIFYLALHAL 232

Query: 241 EKLMNDISS 249
           +KLMNDI+S
Sbjct: 241 DKLMNDITS 232

[Close]

BLAST of Csor.00g192470 vs. ExPASy TrEMBL
Match: A0A6J1D940 (uncharacterized protein LOC111018502 OS=Momordica charantia OX=3673 GN=LOC111018502 PE=4 SV=1)

HSP 1 Score: 392 bits (1007), Expect = 3.96e-136
Identity = 200/250 (80.00%), Postives = 218/250 (87.20%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWKLASNA AGIR + NS VSKQ FWECSDDEVCSE SRDE LECPICWESFNIVEN+PY
Sbjct: 1   MWKLASNAIAGIRLRKNSVVSKQVFWECSDDEVCSEASRDEGLECPICWESFNIVENIPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHTLC+NCVLGLQG VLK+ATRQIR+PI ISCPWCHQLSLR+VYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCKNCVLGLQGSVLKVATRQIRVPICISCPWCHQLSLRLVYKGNLKFPSKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFLDGRVSRHGIERRRR-LF 180
           LLWMVES N +EGKLDH FNGDNQPVF LP      S     LD  VSRHGI RRRR LF
Sbjct: 121 LLWMVESFNDDEGKLDHSFNGDNQPVFPLPSDTETVSSER--LDSHVSRHGIGRRRRWLF 180

Query: 181 SYEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHA 240
            Y++LD +IHLI KFLL VIF+LIVVFVIPGSA+ILLLYLLITFLFALPSLL+FY++LHA
Sbjct: 181 VYKYLDWLIHLISKFLLVVIFLLIVVFVIPGSAVILLLYLLITFLFALPSLLVFYLALHA 240

Query: 241 LEKLMNDISS 249
           LE+LM+DI+S
Sbjct: 241 LERLMSDITS 248

[Close]

BLAST of Csor.00g192470 vs. TAIR 10
Match: AT1G69330.1 (RING/U-box superfamily protein )

HSP 1 Score: 230.7 bits (587), Expect = 1.3e-60
Identity = 141/271 (52.03%), Postives = 171/271 (63.10%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEE-LECPICWESFNIVENVP 60
           MW  ASN    +  K +   S QA  +CSDDEV S  SRDEE LECPICWESFNIVENVP
Sbjct: 1   MWGFASNVIGSMGLKKSPKDSAQASSQCSDDEV-SNISRDEEGLECPICWESFNIVENVP 60

Query: 61  YVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNF 120
           YVLWCGHTLC+NCV GLQ  VL+L+++ IRIP F+SCPWC  LS R+VYKGNLKFP KNF
Sbjct: 61  YVLWCGHTLCQNCVFGLQSAVLRLSSQDIRIPFFVSCPWCQLLSFRIVYKGNLKFPRKNF 120

Query: 121 FLLWMVESLNGNE-GKLDHPFNG----DNQPVFSLPPSDADASQRHSFLDGRVSR----- 180
           FLLWMVESLNG+     D   +G    DNQ     P         HS  +  V+R     
Sbjct: 121 FLLWMVESLNGDRTSHGDRTSHGSLVTDNQQSAPTPRCSMSLG-NHSSNNNLVARPLLRN 180

Query: 181 ----------HGIERRRRLFSY-EHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLY 240
                     H  +  R+LFS+ + LD  I    KF   +IF+LIV F IPGS +IL LY
Sbjct: 181 QSTDLLPHHDHSNQPSRQLFSFHKSLDFFISFTSKFPFVIIFLLIVFFAIPGSLIILALY 240

Query: 241 LLITFLFALPSLLIFYISLHALEKLMNDISS 250
            L+T LFA+P+ L+ Y +   LE+L+N+I+S
Sbjct: 241 FLLTILFAVPAGLVLYFAYPILERLVNEITS 269

[Close]

BLAST of Csor.00g192470 vs. TAIR 10
Match: AT3G29270.1 (RING/U-box superfamily protein )

HSP 1 Score: 209.9 bits (533), Expect = 2.3e-54
Identity = 121/258 (46.90%), Postives = 159/258 (61.63%), Query Frame = 0


Query: 1   MWKLASNAFAG-IRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVP 60
           MW LAS+   G I  KN+      A  ECSDD+V S  S+DE LECPICWESFNIVENVP
Sbjct: 9   MWNLASSYLTGNIGPKNDIRRPVHAHAECSDDDVSSVGSKDEGLECPICWESFNIVENVP 68

Query: 61  YVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNF 120
           YVLWCGHT+C+NC+LGLQ  ++KL T  +++P+FISCPWC+ LS R+V++G L+FP KN+
Sbjct: 69  YVLWCGHTMCKNCILGLQWAIVKLPTHPVQLPLFISCPWCNLLSFRLVFRGTLRFPHKNY 128

Query: 121 FLLWMVESLNG----------NEGKLDHPFNGDNQPVFSLPPSDADASQRHSFLDGRVSR 180
           F+LWMVE +NG           +G  DH       P        +      S  D R+ R
Sbjct: 129 FVLWMVERMNGERRNSPGGAQTDGNNDHT-RETPSPCLHNRHHRSQPEPSRSVNDHRIPR 188

Query: 181 HGIERRRRLFSYEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPS 240
             I+   R    + L   + L  KF L VIF+LI+++ IP SA IL +Y+L+T L ALPS
Sbjct: 189 DNIQTSLR----KSLVFFVQLTAKFPLVVIFLLIILYAIPTSAAILAMYILVTLLLALPS 248

Query: 241 LLIFYISLHALEKLMNDI 248
            LI Y +   L+ L+ +I
Sbjct: 249 FLILYFAYPCLDWLVREI 261

[Close]

BLAST of Csor.00g192470 vs. TAIR 10
Match: AT3G29270.2 (RING/U-box superfamily protein )

HSP 1 Score: 209.9 bits (533), Expect = 2.3e-54
Identity = 121/258 (46.90%), Postives = 159/258 (61.63%), Query Frame = 0


Query: 1   MWKLASNAFAG-IRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVP 60
           MW LAS+   G I  KN+      A  ECSDD+V S  S+DE LECPICWESFNIVENVP
Sbjct: 9   MWNLASSYLTGNIGPKNDIRRPVHAHAECSDDDVSSVGSKDEGLECPICWESFNIVENVP 68

Query: 61  YVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNF 120
           YVLWCGHT+C+NC+LGLQ  ++KL T  +++P+FISCPWC+ LS R+V++G L+FP KN+
Sbjct: 69  YVLWCGHTMCKNCILGLQWAIVKLPTHPVQLPLFISCPWCNLLSFRLVFRGTLRFPHKNY 128

Query: 121 FLLWMVESLNG----------NEGKLDHPFNGDNQPVFSLPPSDADASQRHSFLDGRVSR 180
           F+LWMVE +NG           +G  DH       P        +      S  D R+ R
Sbjct: 129 FVLWMVERMNGERRNSPGGAQTDGNNDHT-RETPSPCLHNRHHRSQPEPSRSVNDHRIPR 188

Query: 181 HGIERRRRLFSYEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPS 240
             I+   R    + L   + L  KF L VIF+LI+++ IP SA IL +Y+L+T L ALPS
Sbjct: 189 DNIQTSLR----KSLVFFVQLTAKFPLVVIFLLIILYAIPTSAAILAMYILVTLLLALPS 248

Query: 241 LLIFYISLHALEKLMNDI 248
            LI Y +   L+ L+ +I
Sbjct: 249 FLILYFAYPCLDWLVREI 261

[Close]

BLAST of Csor.00g192470 vs. TAIR 10
Match: AT1G74370.1 (RING/U-box superfamily protein )

HSP 1 Score: 173.3 bits (438), Expect = 2.4e-43
Identity = 111/270 (41.11%), Postives = 159/270 (58.89%), Query Frame = 0


Query: 1   MWKLASNAF-AGIRSKNNSAVSK--QAFWECSDDEVCSEDSRDEELECPICWESFNIVEN 60
           MW LAS +   G  SK   A +K  +A  + S D    + +++E+LECPICWESFN+VEN
Sbjct: 1   MWNLASKSIREGFISKGEEAATKPRRATLDRSGDG--RKTTKEEKLECPICWESFNVVEN 60

Query: 61  VPYVLWCGHTLCRNCVLGLQ-GYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPS 120
           VPYVLWCGHT+C+ C+LGLQ   V+K +    ++P F++CPWC+ LSLR+V  G ++FPS
Sbjct: 61  VPYVLWCGHTICKYCLLGLQRAIVIKSSALPFQLPFFVACPWCNILSLRLVCNGTIRFPS 120

Query: 121 KNFFLLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQR-----------HSFLDG 180
           KNF+LLWMVES+NG+  +       DN+ V S      D   R              LD 
Sbjct: 121 KNFYLLWMVESMNGSRSEAP----SDNKRVAS---GQRDLRNRCDGVSNTALGDEGLLDN 180

Query: 181 RVSRHGIER------RRRLFSYEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYL 240
           R   +G+ R      R      + +  V HL+ KF L VIF+L+ ++ IP SA +L +Y 
Sbjct: 181 RSWWNGVTRGFFRTGRLHDSVRKSMALVAHLLAKFPLVVIFLLMALYAIPVSAAVLGVYF 240

Query: 241 LITFLFALPSLLIFYISLHALEKLMNDISS 250
            +TF  A+PS L+ Y +  +L  L+ +I++
Sbjct: 241 FVTFALAVPSFLVLYFAFPSLNWLIREIAT 261

[Close]

BLAST of Csor.00g192470 vs. TAIR 10
Match: AT1G21651.1 (zinc ion binding )

HSP 1 Score: 48.9 bits (115), Expect = 6.8e-06
Identity = 31/89 (34.83%), Postives = 43/89 (48.31%), Query Frame = 0


Query: 41  EELECPICWESFNIVENVPYVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCH 100
           EE ECP+C +S++    VP VL CGHT C  C+  L            + P  I CP C 
Sbjct: 2   EEPECPVCLQSYDGESTVPRVLACGHTACEECLTNLPK----------KFPDTIRCPACT 61

Query: 101 QLSLRVVYKGNLKFPSKNFFLLWMVESLN 130
            L ++   +G    P KN  LL +  S++
Sbjct: 62  VL-VKFPPQGPSALP-KNIDLLRLFPSIS 78

The following BLAST results are available for this feature:

BLAST of Csor.00g192470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q13049	7.4e-05	38.81	E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens OX=9606 GN=TRIM32 PE=1 SV=2	[more]
Q8CH72	7.4e-05	38.81	E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus OX=10090 GN=Trim32 PE=1 SV=2	[more]
Q8K0W3	2.1e-04	37.70	RING finger protein 208 OS=Mus musculus OX=10090 GN=Rnf208 PE=1 SV=2	[more]

BLAST of Csor.00g192470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599030.1	3.00e-177	100.00	hypothetical protein SDJN03_08808, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022946373.1	2.47e-176	99.60	uncharacterized protein LOC111450453 [Cucurbita moschata]	[more]
KAG6599045.1	7.07e-176	99.20	hypothetical protein SDJN03_08823, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7029990.1	4.09e-175	98.80	hypothetical protein SDJN02_08334, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023547098.1	3.23e-172	96.79	uncharacterized protein LOC111806010 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g192470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G3L5	1.19e-176	99.60	uncharacterized protein LOC111450453 OS=Cucurbita moschata OX=3662 GN=LOC1114504...	[more]
A0A6J1KAL8	2.22e-172	97.19	uncharacterized protein LOC111493743 OS=Cucurbita maxima OX=3661 GN=LOC111493743...	[more]
A0A1S3CPH8	3.18e-136	81.53	uncharacterized protein LOC103503329 OS=Cucumis melo OX=3656 GN=LOC103503329 PE=...	[more]
A0A5A7TGX0	3.18e-136	81.53	Zf-RING_LisH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1D940	3.96e-136	80.00	uncharacterized protein LOC111018502 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of Csor.00g192470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G69330.1	1.3e-60	52.03	RING/U-box superfamily protein	[more]
AT3G29270.1	2.3e-54	46.90	RING/U-box superfamily protein	[more]
AT3G29270.2	2.3e-54	46.90	RING/U-box superfamily protein	[more]
AT1G74370.1	2.4e-43	41.11	RING/U-box superfamily protein	[more]
AT1G21651.1	6.8e-06	34.83	zinc ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 33..137 e-value: 5.5E-13 score: 50.2
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 45..74 e-value: 2.1E-8 score: 34.0
None	No IPR available	PANTHER	PTHR46616	UBIQUITIN-PROTEIN LIGASE	coord: 1..249
None	No IPR available	PANTHER	PTHR46616:SF1	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..249
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 40..102
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 64..73
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 45..100 score: 10.069786

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g192470.m01	Csor.00g192470.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity