Csor.00g191790 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g191790
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr01: 8913187 .. 8915437 (-)
RNA-Seq Expression	Csor.00g191790
Synteny	Csor.00g191790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGGAGAACAATTGATACGTACAACGAGAACGAGACCCATGGTCCAAGCACACCCACAGTAAGGTACATACACTCACACGTGTAAGCACCCCCTCAATGACACGTGTCACTGTTGTAGACGCCGGCTCTAGTAGCTCGACTTGGCTTCGCATAGCCCCTTGGCTAAAAAACGACTTTATTCGGTTTGGGTTGGCAATTTTGACATCAATTCTTACATTTTTTTTATCCTTTCTTAGTTGATTTTGACCCTAATTAAGAACGAGATGGAGCTCCTAATAGGAAACGACTCCCACGATGCTTGGAGCAACTTCGAGGGATGAAAGACAAGCGTGCTTGAATTTAGTGAAACGACGGCTAAGGCTAACCAAGTAAGTGTTCTTACTATCGGATAGGTTGGACAACTTGTTTTATGTATGACGACACATGCCTCGTGGCCCTTCCACGTGTCATTTATGTTTTATATTTATGATGTTGTGGCTATATTATATGATGATGATATATGATATACGATATATGACGTATGATGACGTGATTGAGTTATATGATAATGTCATATGATATTATATGATGTTCTATGATGTTGTGACATGATGATGTCATATGATGACGACGATGCATGACAACATGATGATGTGAGATTAAATACATGTTTTAAATGTCATGATGCATTATGACCGTGATTTTACTAAGACACAACTCTAGTTAATATCGATGAATATATATTAAAATAATTATAAAAAATTTCAATAATAGTTTAATAATGCGATATATGAATATTAAAAATAGAAAAAGAAAAAAAACTTACAAACTATATCACTTATTCTAAAACAAGATTCCTAATCAATCTATTATTTATATTTATATTTATATATATCACAGTAAATAATATTTATATTTGTTTTATATAATTAATTATCTTTCAAGATGGGTTGATTAAAGTACGAACAAATTATTATCAATTATAAACATTAAATTAATTAATTTTAAATTATTAAATAATATTTTTATTTTAAATTTTAACCATCATTAAAAAAAATTAAATACTTATATATTAAATTATTTAATAAATAAATTTAACTTATTTTATTATAAATAATAGTGTTAATAAATATTGTATTATGTTGATGTAAGTTATTAGTAGATATATAATTTAAGCAAATATACCCTATTTTTTTATTTATATTAATTTATATTAATTTATAAAAATAGAACAATTTAGTGCATTAACATTATTATCTTAATTATTTTAAATGTATTGTTATCCATTATAAATTTAATTTAAGCATATTTATAAAAATTAAATAAATAAATAAAGAGAAAAAAAATAATAAGATACATATAACCACGCCTAATTATTATCAATTATTTTATTTCCACAATGTTTACAAATCATCGCTATATTGATATCTTTATAAAATTACGATTTAGAACATATACATCGAGATCGACGTGTAAACGAGACGGGATGGTCGAGAACTAGAGGGAATTGATAGCAATTTTCATCCCAGCTTGGCAGTGGTTTGGCGTGGTGCATATGAAGAAGCTATGTCCGGTTGAGAGCATGATCTCATCCTTGCCTGAATTGAACACTTTGGCGCCTCTTGGAGCTATGCAGCTTCTATAACCCCCCTCGTCCACTGCCACCACGTTGTGAACTGTCGGGTTATAGTTGAATCCTACAAAAAAAAAAAAAATGTATGTATTTGTTTCGTTTATTATTAACGATCTAACTGCAAATTCGATCGGATACTATTGAAATATATTTTATATAGCCGTAATGTAACAACCTCAGATCCTCTTTGGGCTTTCCCTTTCGGGTTTCCCTTCAAGGCTTTAAAACGCGTCTGCTAAGGGACTTGTGTTTTGATATATTTTATCTTATCTCAAGGATTTGGTTAGTAGAATATTTTCTCTTTTCTCGAACTTTCGATCCCATTTTTGTTTTTCATTCTTAGCATAGTATGAGAGCATTAATCTTAACAGATACGATTATGCAAGTAAATCATCAGTTACTATTCAACGATAAAAACGAGAGTTGAAAACTCACTTAATATGTCATCGGCTCTAAACACCTTCCCATTAGGCCATCCCTCCACGCCCAGGTTCCATCCGTTCGAGTCGCCAACAACAAAAGTTGCAACAGCATCGCCATTGCAACAGCCACTGTGCTCATTGAAACCGCTTCGTTGCTCCCCTCGTGTCCAGCCATTCGTGAAGCCAAAGTAGCTCTCAGAAAAGATATGTAA

mRNA sequence

ATGAATAGGAGAACAATTGATACGTACAACGAGAACGAGACCCATGGTCCAAGCACACCCACAGTAAGGCCATCCCTCCACGCCCAGGTTCCATCCGTTCGAGTCGCCAACAACAAAAGTTGCAACAGCATCGCCATTGCAACAGCCACTGTGCTCATTGAAACCGCTTCGTTGCTCCCCTCGTGTCCAGCCATTCGTGAAGCCAAAGTAGCTCTCAGAAAAGATATGTAA

Coding sequence (CDS)

ATGAATAGGAGAACAATTGATACGTACAACGAGAACGAGACCCATGGTCCAAGCACACCCACAGTAAGGCCATCCCTCCACGCCCAGGTTCCATCCGTTCGAGTCGCCAACAACAAAAGTTGCAACAGCATCGCCATTGCAACAGCCACTGTGCTCATTGAAACCGCTTCGTTGCTCCCCTCGTGTCCAGCCATTCGTGAAGCCAAAGTAGCTCTCAGAAAAGATATGTAA

Protein sequence

MNRRTIDTYNENETHGPSTPTVRPSLHAQVPSVRVANNKSCNSIAIATATVLIETASLLPSCPAIREAKVALRKDM

Homology

[Close]

BLAST of Csor.00g191790 vs. NCBI nr
Match: KAG6607710.1 (hypothetical protein SDJN03_01052, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148 bits (374), Expect = 7.16e-45
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MNRRTIDTYNENETHGPSTPTVRPSLHAQVPSVRVANNKSCNSIAIATATVLIETASLLP 60
          MNRRTIDTYNENETHGPSTPTVRPSLHAQVPSVRVANNKSCNSIAIATATVLIETASLLP
Sbjct: 1  MNRRTIDTYNENETHGPSTPTVRPSLHAQVPSVRVANNKSCNSIAIATATVLIETASLLP 60

Query: 61 SCPAIREAKVALRKDM 76
          SCPAIREAKVALRKDM
Sbjct: 61 SCPAIREAKVALRKDM 76

The following BLAST results are available for this feature:

BLAST of Csor.00g191790 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g191790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607710.1	7.16e-45	100.00	hypothetical protein SDJN03_01052, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g191790 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g191790 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g191790.m01	Csor.00g191790.m01	mRNA