Csor.00g191540 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g191540
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Serine-rich family protein
Location	Csor_Chr01: 9142425 .. 9142748 (-)
RNA-Seq Expression	Csor.00g191540
Synteny	Csor.00g191540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCACAAACCAGATCACAGGGCCCCAAGGCCCACTCACAGACACAGCCTCGATCATCACAACAAAATCGGATTCACAGATTTCGATTTAGAGGATCTGAAGCGGAGCCCTCGCGTACTTGTGTCTCCGTCCTTGCATTCTTCGCCGCAGAAGGTCTCCCCTGCGGCCAAGGGGAGTTGTCTCTGCTCTCCCACGACGCATATTGGCTCCTTCCGATGTCGGCACCACCGGCGCTCTGCTGGTATCCTCCGCGGCGGATCTGTCGGCTCCAATCTCTCCGATTTGGATCGTAAATCGAGTGAATTTATGGGATTCTCCTAG

mRNA sequence

ATGGATCACAAACCAGATCACAGGGCCCCAAGGCCCACTCACAGACACAGCCTCGATCATCACAACAAAATCGGATTCACAGATTTCGATTTAGAGGATCTGAAGCGGAGCCCTCGCGTACTTGTGTCTCCGTCCTTGCATTCTTCGCCGCAGAAGGTCTCCCCTGCGGCCAAGGGGAGTTGTCTCTGCTCTCCCACGACGCATATTGGCTCCTTCCGATGTCGGCACCACCGGCGCTCTGCTGGTATCCTCCGCGGCGGATCTGTCGGCTCCAATCTCTCCGATTTGGATCGTAAATCGAGTGAATTTATGGGATTCTCCTAG

Coding sequence (CDS)

ATGGATCACAAACCAGATCACAGGGCCCCAAGGCCCACTCACAGACACAGCCTCGATCATCACAACAAAATCGGATTCACAGATTTCGATTTAGAGGATCTGAAGCGGAGCCCTCGCGTACTTGTGTCTCCGTCCTTGCATTCTTCGCCGCAGAAGGTCTCCCCTGCGGCCAAGGGGAGTTGTCTCTGCTCTCCCACGACGCATATTGGCTCCTTCCGATGTCGGCACCACCGGCGCTCTGCTGGTATCCTCCGCGGCGGATCTGTCGGCTCCAATCTCTCCGATTTGGATCGTAAATCGAGTGAATTTATGGGATTCTCCTAG

Protein sequence

MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMGFS

Homology

[Close]

BLAST of Csor.00g191540 vs. NCBI nr
Match: KAG6607735.1 (hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037310.1 hypothetical protein SDJN02_00935, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224 bits (571), Expect = 5.86e-74
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGS 60
           MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGS
Sbjct: 1   MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGS 60

Query: 61  CLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMGFS 107
           CLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMGFS
Sbjct: 61  CLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMGFS 107

[Close]

BLAST of Csor.00g191540 vs. NCBI nr
Match: KGN44385.1 (hypothetical protein Csa_015645 [Cucumis sativus])

HSP 1 Score: 137 bits (344), Expect = 3.26e-39
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 1   MDHKPDHRAPRPT--------HRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQK 60
           MD+K DHRAPRP         H H+  HH+K+ FTD +LEDLK++PR+LVSPS  SS   
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  VSPA-AKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMG 105
            +P+ AK +CLCSPTTHIGSFRCRHHR S G++RGGSVGSNLSDL RK +E +G
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHS-GMIRGGSVGSNLSDLTRKPTEIVG 113

[Close]

BLAST of Csor.00g191540 vs. NCBI nr
Match: KAG7024984.1 (hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132 bits (333), Expect = 1.17e-37
Identity = 65/104 (62.50%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 1   MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGS 60
           MDHKPDHRAPRP  R++ +HH+K  FTDFDLED K+   +L S    S   K   +AK S
Sbjct: 1   MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60

Query: 61  CLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFM 104
           CLCSPTTHIGSFRCRHHR + G+LRG SVGSNLS+L  KS++ M
Sbjct: 61  CLCSPTTHIGSFRCRHHRHT-GMLRGRSVGSNLSELAHKSTDLM 103

[Close]

BLAST of Csor.00g191540 vs. NCBI nr
Match: KAA0048240.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D10 protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 1.52e-24
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 24  IGFTDFDLEDLKRSPR-VLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAG 83
           +  T+ +L DLK +   +LVSPS  S+  K   +AK +CLCSPTTHIGSFRCRHHR  AG
Sbjct: 1   MAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRH-AG 60

Query: 84  ILRGGSVGSNLSDLDRKSSEFMG 105
           ++RGGSVGSNLSDL RK +E MG
Sbjct: 61  MIRGGSVGSNLSDLARKPTEIMG 82

[Close]

BLAST of Csor.00g191540 vs. NCBI nr
Match: KAF4362350.1 (hypothetical protein F8388_008234 [Cannabis sativa])

HSP 1 Score: 90.9 bits (224), Expect = 3.69e-21
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 23  KIGFTDFDLEDLKRSPRVLV-SPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSA 82
           K+   + +LED K+   +LV SP   +     S + + +CLCSPTTH+GSFRCRHHR S 
Sbjct: 20  KLNLPEINLEDFKKHTHILVVSPRARTPSVTKSSSTRSNCLCSPTTHVGSFRCRHHR-SL 79

Query: 83  GILRGGSVGSNLSDLDRKSS 101
           G+LRGGSVGSNL+DL RKSS
Sbjct: 80  GMLRGGSVGSNLADLGRKSS 98

[Close]

BLAST of Csor.00g191540 vs. ExPASy TrEMBL
Match: A0A0A0K3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1)

HSP 1 Score: 137 bits (344), Expect = 1.58e-39
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 1   MDHKPDHRAPRPT--------HRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQK 60
           MD+K DHRAPRP         H H+  HH+K+ FTD +LEDLK++PR+LVSPS  SS   
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  VSPA-AKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMG 105
            +P+ AK +CLCSPTTHIGSFRCRHHR S G++RGGSVGSNLSDL RK +E +G
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHS-GMIRGGSVGSNLSDLTRKPTEIVG 113

[Close]

BLAST of Csor.00g191540 vs. ExPASy TrEMBL
Match: A0A5A7TYF3 (Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70465G00010 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.38e-25
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 24  IGFTDFDLEDLKRSPR-VLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAG 83
           +  T+ +L DLK +   +LVSPS  S+  K   +AK +CLCSPTTHIGSFRCRHHR  AG
Sbjct: 1   MAITELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRH-AG 60

Query: 84  ILRGGSVGSNLSDLDRKSSEFMG 105
           ++RGGSVGSNLSDL RK +E MG
Sbjct: 61  MIRGGSVGSNLSDLARKPTEIMG 82

[Close]

BLAST of Csor.00g191540 vs. ExPASy TrEMBL
Match: A0A7J6EXD7 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008234 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.79e-21
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 23  KIGFTDFDLEDLKRSPRVLV-SPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSA 82
           K+   + +LED K+   +LV SP   +     S + + +CLCSPTTH+GSFRCRHHR S 
Sbjct: 20  KLNLPEINLEDFKKHTHILVVSPRARTPSVTKSSSTRSNCLCSPTTHVGSFRCRHHR-SL 79

Query: 83  GILRGGSVGSNLSDLDRKSS 101
           G+LRGGSVGSNL+DL RKSS
Sbjct: 80  GMLRGGSVGSNLADLGRKSS 98

[Close]

BLAST of Csor.00g191540 vs. ExPASy TrEMBL
Match: A0A7J6H8T3 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_016661 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.91e-21
Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 1   MDHKPDHR-APRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLV-SPSLHSSPQKVSPAAK 60
           MD K + R +  P ++    +  K+   + +LED K+   +LV SP   +     S + +
Sbjct: 12  MDTKMEQRTSSSPNNKEMSINKYKLNLPEINLEDFKKHTHILVVSPRARTPSVTKSSSTR 71

Query: 61  GSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSS 101
            +CLCSPTTH+GSFRCRHHR S G+LRGGSVGSNL+DL RKSS
Sbjct: 72  SNCLCSPTTHVGSFRCRHHR-SLGMLRGGSVGSNLADLGRKSS 113

[Close]

BLAST of Csor.00g191540 vs. ExPASy TrEMBL
Match: A0A5N6L3X1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026425 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.18e-20
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 23  KIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAG 82
           KI   + +L+D+K+ P +LVSPSL  +  K S   K +CLCSPTTH+GSFRCRHHR S+ 
Sbjct: 19  KINIPEINLDDIKKHPHLLVSPSLKETKAKQSGRWK-NCLCSPTTHVGSFRCRHHRNSS- 78

Query: 83  ILRGGSVGSNLSDLDRKS 100
           + RGGSVGS LS+L  KS
Sbjct: 79  MHRGGSVGSKLSELAHKS 94

[Close]

BLAST of Csor.00g191540 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-09
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 28  DFDLEDLKRSPRVLVSPSLH--------SSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRR 87
           D   +D+KR     +SP +         S     S + + +CLC+PTTH GSFRCR+HRR
Sbjct: 24  DVSQDDIKRQEAYNMSPRVRRGGGGGGGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRR 83

Query: 88  SAGI--LRGGSVGSNLSDL 97
           +AG+   RG SV SNLS L
Sbjct: 84  NAGLGMSRGTSVPSNLSML 102

[Close]

BLAST of Csor.00g191540 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related )

HSP 1 Score: 57.8 bits (138), Expect = 6.3e-09
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 43  SPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSD-LDRKSS 102
           SPSL         + + +CLCSPTTH GSFRCR+HR  + + R GS+GSNL+  L  KSS
Sbjct: 46  SPSLKRWRSSSGKSTRLNCLCSPTTHAGSFRCRYHRVDS-LTRAGSIGSNLAVLLSSKSS 105

Query: 103 EF 104
            F
Sbjct: 106 RF 106

[Close]

BLAST of Csor.00g191540 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 42.0 bits (97), Expect = 3.6e-04
Identity = 21/42 (50.00%), Postives = 24/42 (57.14%), Query Frame = 0


Query: 38 PRVLVSPSLHSSPQKVSPAAKGSCLCSPTTHIGSFRCRHHRR 80
          P V+   S H + +K        CLCSPTTH GSFRC  HRR
Sbjct: 56 PSVVTVSSNHQTKRK--------CLCSPTTHPGSFRCSFHRR 89

[Close]

BLAST of Csor.00g191540 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 4.7e-04
Identity = 17/21 (80.95%), Postives = 18/21 (85.71%), Query Frame = 0


Query: 58 KGSCLCSPTTHIGSFRCRHHR 79
          K +CLCSPTTH GSFRCR HR
Sbjct: 41 KTNCLCSPTTHPGSFRCRIHR 61

[Close]

BLAST of Csor.00g191540 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 41.6 bits (96), Expect = 4.7e-04
Identity = 17/21 (80.95%), Postives = 18/21 (85.71%), Query Frame = 0


Query: 58 KGSCLCSPTTHIGSFRCRHHR 79
          K +CLCSPTTH GSFRCR HR
Sbjct: 41 KTNCLCSPTTHPGSFRCRIHR 61

The following BLAST results are available for this feature:

BLAST of Csor.00g191540 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g191540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607735.1	5.86e-74	100.00	hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN44385.1	3.26e-39	62.28	hypothetical protein Csa_015645 [Cucumis sativus]	[more]
KAG7024984.1	1.17e-37	62.50	hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0048240.1	1.52e-24	61.45	putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D...	[more]
KAF4362350.1	3.69e-21	56.25	hypothetical protein F8388_008234 [Cannabis sativa]	[more]

BLAST of Csor.00g191540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3W3	1.58e-39	62.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1	[more]
A0A5A7TYF3	7.38e-25	61.45	Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A7J6EXD7	1.79e-21	56.25	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008234 PE=4 SV=1	[more]
A0A7J6H8T3	1.91e-21	48.54	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_016661 PE=4 SV=1	[more]
A0A5N6L3X1	2.18e-20	57.69	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026425 PE=4 SV=1	[more]

BLAST of Csor.00g191540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13227.1	2.2e-09	44.30	serine-rich protein-related	[more]
AT5G55980.1	6.3e-09	51.61	serine-rich protein-related	[more]
AT5G20370.1	3.6e-04	50.00	serine-rich protein-related	[more]
AT1G67910.1	4.7e-04	80.95	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	4.7e-04	80.95	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR33132:SF73	SERINE-RICH PROTEIN-LIKE PROTEIN	coord: 42..103
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 42..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g191540.m01	Csor.00g191540.m01	mRNA