Csor.00g190200 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g190200
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionDNA mismatch repair protein MLH3 isoform X2
LocationCsor_Chr16: 9420666 .. 9421833 (-)
RNA-Seq ExpressionCsor.00g190200
SyntenyCsor.00g190200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCATGATTTGCCTTATTAGGGGACCGGGAAGGCTTAGATTAGAAATCCAAGCTTCTGTAGTGAAATCTTGCATCATTTGTCCAAGTGCTCTCGCCATTGGAACGAACCTTTCAGAAAATGCAATTAATGTATTAAGTTTTGGTGAAAATAATGAACCCTTGATCTTTCCATTTATCTGCTAATTCTTCTCCTATTCTTCTACTTCTTGTTTCCCATTTGATGGTTTTCCTTATTAATGCACCGTAATGCCAGATGGGGATTCTCAAGCCCTTGCCGAGGTGTGTTCGTAGTTCTGCGCGTGCTAGTGTTATTCCCTATGGTGTCAGAAGGTCGTGGAAGAGCTTATTCATAATACCTTGAATGCTGATGGGTGGAAGGTATGGAGTCTTCTAATCATCCATCATAATTACTGTTCTACGCTGAGGCATGGGGTTGCTTTACTCTCCCAAGTAGGAAGTAAAGCGTTTTATTACTAGCTATCTATGCTAAGGTAAGTTAATCCGGTTGGTAGTATACGGAATACTTGAATTTTGATGAACTATGTCAATAAGTTTGGGTGATCTGCCTATGGCATGCTTGATGTGATTATCTTATCGACAGGTGGTGAAAAGTAGAATTCTAAGGAAGGAAACAGACATGTTAGCAAGCTGGAAAATACTTAATGAATTTGGATTTACTACCTCAGGTGTTTTTATGAGAGCTCAACCGAACCTACCCCTCTTTTTCTCTGATTCAAGGGAAGTCTAACAAGGTATCCATAGGGGAACCTTATTTCAATAGCTTTATGCAGTGAAATTGAAATTTCATGATCTCATCAAGATGCCCAAGGTGGAACGTTTGGCTCCCGAGGACAGGCATTTGCTTCGATTTCAGATGTATCGGTGGTGGAGATCATAACCAAAGCATGTGGGAGGGCAAATGGATATTCTAAAGTCATGAAGGTACAGAGGTTTACAGCTATTTAGTAATGGAGCAATATATGCCTCATATTTTGTTGTCCTTCAAAGTAATTAACTTTTATTCTGTTCGTCACAGGGTTGCAAATGCTTGTGTCTTGGAATTGATGATGATATGGAAGATGTTGGTACTACTGGTAACAGTTTCATCATCCCTCAGTTACATTATATTGTGAAAATCGCTTACCATGCTTTAAGACCTTGCTAG

mRNA sequence

ATGTCCATGATTTGCCTTATTAGGGGACCGGGAAGGCTTAGATTAGAAATCCAAGCTTCTGTAGTGAAATCTTGCATCATTTGTCCAAGTGCTCTCGCCATTGGAACGAACCTTTCAGAAAATGCAATTAATAAGGTCGTGGAAGAGCTTATTCATAATACCTTGAATGCTGATGGGTGGAAGGTGGTGAAAAGTAGAATTCTAAGGAAGGAAACAGACATGTTAGCAAGCTGGAAAATACTTAATGAATTTGGATTTACTACCTCAGATGCCCAAGGTGGAACGTTTGGCTCCCGAGGACAGGCATTTGCTTCGATTTCAGATGTATCGGTGGTGGAGATCATAACCAAAGCATGTGGGAGGGCAAATGGATATTCTAAAGTCATGAAGGGTTGCAAATGCTTGTGTCTTGGAATTGATGATGATATGGAAGATGTTGGTACTACTGGTAACAGTTTCATCATCCCTCAGTTACATTATATTGTGAAAATCGCTTACCATGCTTTAAGACCTTGCTAG

Coding sequence (CDS)

ATGTCCATGATTTGCCTTATTAGGGGACCGGGAAGGCTTAGATTAGAAATCCAAGCTTCTGTAGTGAAATCTTGCATCATTTGTCCAAGTGCTCTCGCCATTGGAACGAACCTTTCAGAAAATGCAATTAATAAGGTCGTGGAAGAGCTTATTCATAATACCTTGAATGCTGATGGGTGGAAGGTGGTGAAAAGTAGAATTCTAAGGAAGGAAACAGACATGTTAGCAAGCTGGAAAATACTTAATGAATTTGGATTTACTACCTCAGATGCCCAAGGTGGAACGTTTGGCTCCCGAGGACAGGCATTTGCTTCGATTTCAGATGTATCGGTGGTGGAGATCATAACCAAAGCATGTGGGAGGGCAAATGGATATTCTAAAGTCATGAAGGGTTGCAAATGCTTGTGTCTTGGAATTGATGATGATATGGAAGATGTTGGTACTACTGGTAACAGTTTCATCATCCCTCAGTTACATTATATTGTGAAAATCGCTTACCATGCTTTAAGACCTTGCTAG

Protein sequence

MSMICLIRGPGRLRLEIQASVVKSCIICPSALAIGTNLSENAINKVVEELIHNTLNADGWKVVKSRILRKETDMLASWKILNEFGFTTSDAQGGTFGSRGQAFASISDVSVVEIITKACGRANGYSKVMKGCKCLCLGIDDDMEDVGTTGNSFIIPQLHYIVKIAYHALRPC
Homology
BLAST of Csor.00g190200 vs. ExPASy Swiss-Prot
Match: F4JN26 (DNA mismatch repair protein MLH3 OS=Arabidopsis thaliana OX=3702 GN=MLH3 PE=2 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 6.8e-18
Identity = 57/121 (47.11%), Postives = 73/121 (60.33%), Query Frame = 0

Query: 45  KVVEELIHNTLNADGWKV----------VK-----SRILRKETDMLASWKILNEF-GFTT 104
           +VVEEL+ N+L+A   KV          VK     S + R +  +L      ++F  FT 
Sbjct: 26  RVVEELVFNSLDAGATKVSIFVGVVSCSVKVVDDGSGVSRDDLVLLGERYATSKFHDFTN 85

Query: 105 SDAQGGTFGSRGQAFASISDVSVVEIITKACGRANGYSKVMKGCKCLCLGIDDDMEDVGT 150
            +    TFG RG+A ASISD+S++E+ TKA GR NGY KVMKG KCL LGIDDD +D GT
Sbjct: 86  VETASETFGFRGEALASISDISLLEVRTKAIGRPNGYRKVMKGSKCLHLGIDDDRKDSGT 145

BLAST of Csor.00g190200 vs. NCBI nr
Match: KAG6577819.1 (DNA mismatch repair protein MLH3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 347 bits (891), Expect = 1.19e-120
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0

Query: 1   MSMICLIRGPGRLRLEIQASVVKSCIICPSALAIGTNLSENAINKVVEELIHNTLNADGW 60
           MSMICLIRGPGRLRLEIQASVVKSCIICPSALAIGTNLSENAINKVVEELIHNTLNADGW
Sbjct: 1   MSMICLIRGPGRLRLEIQASVVKSCIICPSALAIGTNLSENAINKVVEELIHNTLNADGW 60

Query: 61  KVVKSRILRKETDMLASWKILNEFGFTTSDAQGGTFGSRGQAFASISDVSVVEIITKACG 120
           KVVKSRILRKETDMLASWKILNEFGFTTSDAQGGTFGSRGQAFASISDVSVVEIITKACG
Sbjct: 61  KVVKSRILRKETDMLASWKILNEFGFTTSDAQGGTFGSRGQAFASISDVSVVEIITKACG 120

Query: 121 RANGYSKVMKGCKCLCLGIDDDMEDVGTTGNSFIIPQLHYIVKIAYHALRPC 172
           RANGYSKVMKGCKCLCLGIDDDMEDVGTTGNSFIIPQLHYIVKIAYHALRPC
Sbjct: 121 RANGYSKVMKGCKCLCLGIDDDMEDVGTTGNSFIIPQLHYIVKIAYHALRPC 172

BLAST of Csor.00g190200 vs. NCBI nr
Match: KAG7015858.1 (DNA mismatch repair protein MLH3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268 bits (686), Expect = 1.23e-89
Identity = 130/132 (98.48%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 41  NAINKVVEELIHNTLNADGWKVVKSRILRKETDMLASWKILNEFGFTTSDAQGGTFGSRG 100
           +AI+KVVEELIHNTLNADGWKVVKSRILRKETDMLASWKILNEFGFTTSDAQGGTFGSRG
Sbjct: 25  SAISKVVEELIHNTLNADGWKVVKSRILRKETDMLASWKILNEFGFTTSDAQGGTFGSRG 84

Query: 101 QAFASISDVSVVEIITKACGRANGYSKVMKGCKCLCLGIDDDMEDVGTTGNSFIIPQLHY 160
           QAFASISDVSVVEIITKACGRANGYSKVMKGCKCLCLGIDDDMEDVGTTGNSFIIPQLHY
Sbjct: 85  QAFASISDVSVVEIITKACGRANGYSKVMKGCKCLCLGIDDDMEDVGTTGNSFIIPQLHY 144

Query: 161 IVKIAYHALRPC 172
           IVKIAYHALRPC
Sbjct: 145 IVKIAYHALRPC 156

BLAST of Csor.00g190200 vs. NCBI nr
Match: XP_038903645.1 (DNA mismatch repair protein MLH3 isoform X4 [Benincasa hispida])

HSP 1 Score: 114 bits (285), Expect = 8.97e-26
Identity = 69/134 (51.49%), Postives = 86/134 (64.18%), Query Frame = 0

Query: 43  INKVVEELIHNTLNADGWKV----------VK-----SRILRKETDMLASWKILNEF-GF 102
           + KVVEEL++N+L+A   K+          VK     S I R    +L    + ++F   
Sbjct: 29  VTKVVEELVYNSLDAGASKISIFMGIGTSYVKVVDDGSGITRDGLVLLGERYVTSKFHDL 88

Query: 103 TTSDAQGGTFGSRGQAFASISDVSVVEIITKACGRANGYSKVMKGCKCLCLGIDDDMEDV 160
              D++ GTFG RG+A ASISDVS+VEIIT+ACGRANGY KV+KGCKCL LGIDDDMEDV
Sbjct: 89  VDMDSKCGTFGFRGEALASISDVSLVEIITRACGRANGYRKVLKGCKCLYLGIDDDMEDV 148

BLAST of Csor.00g190200 vs. NCBI nr
Match: XP_038903644.1 (DNA mismatch repair protein MLH3 isoform X3 [Benincasa hispida])

HSP 1 Score: 114 bits (285), Expect = 8.99e-26
Identity = 69/134 (51.49%), Postives = 86/134 (64.18%), Query Frame = 0

Query: 43  INKVVEELIHNTLNADGWKV----------VK-----SRILRKETDMLASWKILNEF-GF 102
           + KVVEEL++N+L+A   K+          VK     S I R    +L    + ++F   
Sbjct: 24  VTKVVEELVYNSLDAGASKISIFMGIGTSYVKVVDDGSGITRDGLVLLGERYVTSKFHDL 83

Query: 103 TTSDAQGGTFGSRGQAFASISDVSVVEIITKACGRANGYSKVMKGCKCLCLGIDDDMEDV 160
              D++ GTFG RG+A ASISDVS+VEIIT+ACGRANGY KV+KGCKCL LGIDDDMEDV
Sbjct: 84  VDMDSKCGTFGFRGEALASISDVSLVEIITRACGRANGYRKVLKGCKCLYLGIDDDMEDV 143

BLAST of Csor.00g190200 vs. NCBI nr
Match: XP_038903643.1 (DNA mismatch repair protein MLH3 isoform X2 [Benincasa hispida])

HSP 1 Score: 114 bits (285), Expect = 8.99e-26
Identity = 69/134 (51.49%), Postives = 86/134 (64.18%), Query Frame = 0

Query: 43  INKVVEELIHNTLNADGWKV----------VK-----SRILRKETDMLASWKILNEF-GF 102
           + KVVEEL++N+L+A   K+          VK     S I R    +L    + ++F   
Sbjct: 29  VTKVVEELVYNSLDAGASKISIFMGIGTSYVKVVDDGSGITRDGLVLLGERYVTSKFHDL 88

Query: 103 TTSDAQGGTFGSRGQAFASISDVSVVEIITKACGRANGYSKVMKGCKCLCLGIDDDMEDV 160
              D++ GTFG RG+A ASISDVS+VEIIT+ACGRANGY KV+KGCKCL LGIDDDMEDV
Sbjct: 89  VDMDSKCGTFGFRGEALASISDVSLVEIITRACGRANGYRKVLKGCKCLYLGIDDDMEDV 148

BLAST of Csor.00g190200 vs. ExPASy TrEMBL
Match: A0A6J1DVM2 (DNA mismatch repair protein MLH3 isoform X5 OS=Momordica charantia OX=3673 GN=LOC111024800 PE=3 SV=1)

HSP 1 Score: 113 bits (283), Expect = 7.93e-26
Identity = 68/134 (50.75%), Postives = 85/134 (63.43%), Query Frame = 0

Query: 43  INKVVEELIHNTLNADGWKV----------VK-----SRILRKETDMLASWKILNEF-GF 102
           + +VVEEL++N+L+A   K+          VK     S I R    +L    + ++F   
Sbjct: 24  VTRVVEELVYNSLDAGASKISISIGTGTSYVKVADDGSGITRDGLVLLGERYVTSKFHDL 83

Query: 103 TTSDAQGGTFGSRGQAFASISDVSVVEIITKACGRANGYSKVMKGCKCLCLGIDDDMEDV 160
              DA+G TFG RG++ ASISDVS+VEIITK CGRANGY KVMKGCKCL LG+DDDMEDV
Sbjct: 84  IDMDAKGRTFGFRGESLASISDVSLVEIITKTCGRANGYRKVMKGCKCLYLGVDDDMEDV 143

BLAST of Csor.00g190200 vs. ExPASy TrEMBL
Match: A0A6J1DWT6 (DNA mismatch repair protein MLH3 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111024800 PE=3 SV=1)

HSP 1 Score: 113 bits (283), Expect = 7.95e-26
Identity = 68/134 (50.75%), Postives = 85/134 (63.43%), Query Frame = 0

Query: 43  INKVVEELIHNTLNADGWKV----------VK-----SRILRKETDMLASWKILNEF-GF 102
           + +VVEEL++N+L+A   K+          VK     S I R    +L    + ++F   
Sbjct: 24  VTRVVEELVYNSLDAGASKISISIGTGTSYVKVADDGSGITRDGLVLLGERYVTSKFHDL 83

Query: 103 TTSDAQGGTFGSRGQAFASISDVSVVEIITKACGRANGYSKVMKGCKCLCLGIDDDMEDV 160
              DA+G TFG RG++ ASISDVS+VEIITK CGRANGY KVMKGCKCL LG+DDDMEDV
Sbjct: 84  IDMDAKGRTFGFRGESLASISDVSLVEIITKTCGRANGYRKVMKGCKCLYLGVDDDMEDV 143

BLAST of Csor.00g190200 vs. ExPASy TrEMBL
Match: A0A6J1E0G9 (DNA mismatch repair protein MLH3 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111024800 PE=3 SV=1)

HSP 1 Score: 113 bits (283), Expect = 7.96e-26
Identity = 68/134 (50.75%), Postives = 85/134 (63.43%), Query Frame = 0

Query: 43  INKVVEELIHNTLNADGWKV----------VK-----SRILRKETDMLASWKILNEF-GF 102
           + +VVEEL++N+L+A   K+          VK     S I R    +L    + ++F   
Sbjct: 24  VTRVVEELVYNSLDAGASKISISIGTGTSYVKVADDGSGITRDGLVLLGERYVTSKFHDL 83

Query: 103 TTSDAQGGTFGSRGQAFASISDVSVVEIITKACGRANGYSKVMKGCKCLCLGIDDDMEDV 160
              DA+G TFG RG++ ASISDVS+VEIITK CGRANGY KVMKGCKCL LG+DDDMEDV
Sbjct: 84  IDMDAKGRTFGFRGESLASISDVSLVEIITKTCGRANGYRKVMKGCKCLYLGVDDDMEDV 143

BLAST of Csor.00g190200 vs. ExPASy TrEMBL
Match: A0A6J1DVD7 (DNA mismatch repair protein MLH3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024800 PE=3 SV=1)

HSP 1 Score: 113 bits (283), Expect = 8.02e-26
Identity = 68/134 (50.75%), Postives = 85/134 (63.43%), Query Frame = 0

Query: 43  INKVVEELIHNTLNADGWKV----------VK-----SRILRKETDMLASWKILNEF-GF 102
           + +VVEEL++N+L+A   K+          VK     S I R    +L    + ++F   
Sbjct: 24  VTRVVEELVYNSLDAGASKISISIGTGTSYVKVADDGSGITRDGLVLLGERYVTSKFHDL 83

Query: 103 TTSDAQGGTFGSRGQAFASISDVSVVEIITKACGRANGYSKVMKGCKCLCLGIDDDMEDV 160
              DA+G TFG RG++ ASISDVS+VEIITK CGRANGY KVMKGCKCL LG+DDDMEDV
Sbjct: 84  IDMDAKGRTFGFRGESLASISDVSLVEIITKTCGRANGYRKVMKGCKCLYLGVDDDMEDV 143

BLAST of Csor.00g190200 vs. ExPASy TrEMBL
Match: A0A0A0L1I8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000710 PE=3 SV=1)

HSP 1 Score: 113 bits (282), Expect = 1.10e-25
Identity = 68/134 (50.75%), Postives = 85/134 (63.43%), Query Frame = 0

Query: 43  INKVVEELIHNTLNADGWKV----------VK-----SRILRKETDMLASWKILNEF-GF 102
           + KVVEEL++N+L+A   K+          VK     S I R    +L    + ++F   
Sbjct: 24  VTKVVEELVYNSLDAGASKISIFIGIGTSYVKVVDNGSGITRDGLVLLGERYVTSKFHDL 83

Query: 103 TTSDAQGGTFGSRGQAFASISDVSVVEIITKACGRANGYSKVMKGCKCLCLGIDDDMEDV 160
             +D +GGTFG RG+A ASISD S+VEIIT+ACGRANGY KV+KGCKCL LGIDDDMED 
Sbjct: 84  IDTDNKGGTFGFRGEALASISDFSLVEIITRACGRANGYRKVLKGCKCLYLGIDDDMEDF 143

BLAST of Csor.00g190200 vs. TAIR 10
Match: AT4G35520.1 (MUTL protein homolog 3 )

HSP 1 Score: 92.0 bits (227), Expect = 4.9e-19
Identity = 57/121 (47.11%), Postives = 73/121 (60.33%), Query Frame = 0

Query: 45  KVVEELIHNTLNADGWKV----------VK-----SRILRKETDMLASWKILNEF-GFTT 104
           +VVEEL+ N+L+A   KV          VK     S + R +  +L      ++F  FT 
Sbjct: 26  RVVEELVFNSLDAGATKVSIFVGVVSCSVKVVDDGSGVSRDDLVLLGERYATSKFHDFTN 85

Query: 105 SDAQGGTFGSRGQAFASISDVSVVEIITKACGRANGYSKVMKGCKCLCLGIDDDMEDVGT 150
            +    TFG RG+A ASISD+S++E+ TKA GR NGY KVMKG KCL LGIDDD +D GT
Sbjct: 86  VETASETFGFRGEALASISDISLLEVRTKAIGRPNGYRKVMKGSKCLHLGIDDDRKDSGT 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
F4JN266.8e-1847.11DNA mismatch repair protein MLH3 OS=Arabidopsis thaliana OX=3702 GN=MLH3 PE=2 SV... [more]
Match NameE-valueIdentityDescription
KAG6577819.11.19e-120100.00DNA mismatch repair protein MLH3, partial [Cucurbita argyrosperma subsp. sororia... [more]
KAG7015858.11.23e-8998.48DNA mismatch repair protein MLH3, partial [Cucurbita argyrosperma subsp. argyros... [more]
XP_038903645.18.97e-2651.49DNA mismatch repair protein MLH3 isoform X4 [Benincasa hispida][more]
XP_038903644.18.99e-2651.49DNA mismatch repair protein MLH3 isoform X3 [Benincasa hispida][more]
XP_038903643.18.99e-2651.49DNA mismatch repair protein MLH3 isoform X2 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1DVM27.93e-2650.75DNA mismatch repair protein MLH3 isoform X5 OS=Momordica charantia OX=3673 GN=LO... [more]
A0A6J1DWT67.95e-2650.75DNA mismatch repair protein MLH3 isoform X4 OS=Momordica charantia OX=3673 GN=LO... [more]
A0A6J1E0G97.96e-2650.75DNA mismatch repair protein MLH3 isoform X3 OS=Momordica charantia OX=3673 GN=LO... [more]
A0A6J1DVD78.02e-2650.75DNA mismatch repair protein MLH3 isoform X2 OS=Momordica charantia OX=3673 GN=LO... [more]
A0A0A0L1I81.10e-2550.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000710 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT4G35520.14.9e-1947.11MUTL protein homolog 3 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036890Histidine kinase/HSP90-like ATPase superfamilyGENE3D3.30.565.10coord: 68..160
e-value: 3.3E-6
score: 28.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g190200.m01Csor.00g190200.m01mRNA