Csor.00g190110 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g190110
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr16: 9376014 .. 9377163 (-)
RNA-Seq ExpressionCsor.00g190110
SyntenyCsor.00g190110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCGAGATTTGAATTCATCACCATGGTCATCATTAATGGATAATGAGGTTTACACAACTGGAAGGGAGCTTAAAGGTCTGATCTTCAAGGATTTGATTGAAGGAGTTGTGAAGTATTTGTAAAAATGATGCTGCAAACTGCAGAGTCTTAATTCTCAGGCCACTGACCTCGTGCTACTACTTGAAGTGGACAGAAATTGCATAGAAACCAAAATATTGAGCTCAAGTCTATCGTTAATAGATACTGTCCGTTTTAGCCTGTTACGTATCGCCGTCAACTTCACGATTTTAAAATCCGTGTGTTAAGAAGAGGTATTCACACCCTTTAAGCAATGTTTTGTTCCCCTCTCAACCGATGTAGAATCTCACAATCTACCTCCCTTGGGGGCTGGCATACCGCCTAGTGTTTGACTTTGATACCATTTGTAAATAATTCAAGTCCACCGCTAGCAGATATTATCCGTATTGGCCCGTTACGTGTCGCCGTCAGCCTCACGCTTTTAAAACGCGTTTGTTATAGAGAAGTTTTTACCCCTTATAAGCAATATTTTGTTCACCTCTCCAACCGGTGCGAGATCTCACGAGGTCTTATTAGAGGTAAAAGGCCCTTATCTCATCTGATAGTATTATAATTTACTATAATTTGTAAAGGAAAGTTAACATGATGTTTTTCTCTGCAGTTTGTGCACGACTCTTGCCTTCGCCAGTCTCTTGTAAGATCAAGTGTTGCCGCAAGTTCAATGTTCAATTGCTGCTGACAAAAGGTACAAACTTGTACAACATTTATCCACAAACAATTGAATTTTATACGTCGTCTTGCGTGTATTTATTTCTTTTACCCTCAACGAGAAGATTATTTTGTTTGATTCACAAATTTATGAAGTTTATGTTTATAAAGTTTAGACATAGTTTATTTGAGTATGTATAACTTGGGTTTGGTTGGTAAATTGTTGATTGATAATTTTCACATGTGATTTATAAAATGTGGGTTTCATAAATCTGTTTGAGATAAACATGCTCATGCTCATGCTCATGCTCATGCCAACTAACTAAATATTACATGACTCTTGATTTCTGAATTTCAGGTTATACAAATCTGTGTAAGATTAACATGCTTTGGATTGTTAGAAACAGAATGCTCGATTAA

mRNA sequence

ATGGCCCGAGATTTGAATTCATCACCATGGTCATCATTAATGGATAATGAGGTTTACACAACTGGAAGGGAGCTTAAAGTTTGTGCACGACTCTTGCCTTCGCCAGTCTCTTGTAAGATCAAGTGTTGCCGCAAGTTCAATGTTCAATTGCTGCTGACAAAAGGTTATACAAATCTGTGTAAGATTAACATGCTTTGGATTGTTAGAAACAGAATGCTCGATTAA

Coding sequence (CDS)

ATGGCCCGAGATTTGAATTCATCACCATGGTCATCATTAATGGATAATGAGGTTTACACAACTGGAAGGGAGCTTAAAGTTTGTGCACGACTCTTGCCTTCGCCAGTCTCTTGTAAGATCAAGTGTTGCCGCAAGTTCAATGTTCAATTGCTGCTGACAAAAGGTTATACAAATCTGTGTAAGATTAACATGCTTTGGATTGTTAGAAACAGAATGCTCGATTAA

Protein sequence

MARDLNSSPWSSLMDNEVYTTGRELKVCARLLPSPVSCKIKCCRKFNVQLLLTKGYTNLCKINMLWIVRNRMLD
Homology
[Close]
BLAST of Csor.00g190110 vs. NCBI nr
Match: KAG6577810.1 (hypothetical protein SDJN03_25384, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154 bits (390), Expect = 2.25e-47
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MARDLNSSPWSSLMDNEVYTTGRELKVCARLLPSPVSCKIKCCRKFNVQLLLTKGYTNLC 60
          MARDLNSSPWSSLMDNEVYTTGRELKVCARLLPSPVSCKIKCCRKFNVQLLLTKGYTNLC
Sbjct: 1  MARDLNSSPWSSLMDNEVYTTGRELKVCARLLPSPVSCKIKCCRKFNVQLLLTKGYTNLC 60

Query: 61 KINMLWIVRNRMLD 74
          KINMLWIVRNRMLD
Sbjct: 61 KINMLWIVRNRMLD 74

[Close]
BLAST of Csor.00g190110 vs. NCBI nr
Match: XP_022145279.1 (uncharacterized protein LOC111014768 isoform X2 [Momordica charantia])

HSP 1 Score: 47.8 bits (112), Expect = 5.59e-04
Identity = 21/26 (80.77%), Postives = 25/26 (96.15%), Query Frame = 0 

Query: 1   MARDLNSSPWSSLMDNEVYTTGRELK 26
           MARDLNS+PWSSLMD+EV TTGRE++
Sbjct: 773 MARDLNSTPWSSLMDDEVNTTGREVE 798

[Close]
BLAST of Csor.00g190110 vs. NCBI nr
Match: XP_022145277.1 (uncharacterized protein LOC111014768 isoform X1 [Momordica charantia] >XP_022145278.1 uncharacterized protein LOC111014768 isoform X1 [Momordica charantia])

HSP 1 Score: 47.8 bits (112), Expect = 5.60e-04
Identity = 21/26 (80.77%), Postives = 25/26 (96.15%), Query Frame = 0 

Query: 1   MARDLNSSPWSSLMDNEVYTTGRELK 26
           MARDLNS+PWSSLMD+EV TTGRE++
Sbjct: 846 MARDLNSTPWSSLMDDEVNTTGREVE 871

[Close]
BLAST of Csor.00g190110 vs. ExPASy TrEMBL
Match: A0A6J1CUS2 (uncharacterized protein LOC111014768 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014768 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.71e-04
Identity = 21/26 (80.77%), Postives = 25/26 (96.15%), Query Frame = 0 

Query: 1   MARDLNSSPWSSLMDNEVYTTGRELK 26
           MARDLNS+PWSSLMD+EV TTGRE++
Sbjct: 773 MARDLNSTPWSSLMDDEVNTTGREVE 798

[Close]
BLAST of Csor.00g190110 vs. ExPASy TrEMBL
Match: A0A6J1CW53 (uncharacterized protein LOC111014768 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014768 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.71e-04
Identity = 21/26 (80.77%), Postives = 25/26 (96.15%), Query Frame = 0 

Query: 1   MARDLNSSPWSSLMDNEVYTTGRELK 26
           MARDLNS+PWSSLMD+EV TTGRE++
Sbjct: 846 MARDLNSTPWSSLMDDEVNTTGREVE 871

[Close]
BLAST of Csor.00g190110 vs. ExPASy TrEMBL
Match: A0A5D3CJM8 (RB1-inducible coiled-coil protein 1, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00260 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 9.47e-04
Identity = 20/26 (76.92%), Postives = 25/26 (96.15%), Query Frame = 0 

Query: 1   MARDLNSSPWSSLMDNEVYTTGRELK 26
           MARDLNS+PWSSL+D+EV TTGRE++
Sbjct: 752 MARDLNSTPWSSLVDDEVNTTGREVE 777

[Close]
BLAST of Csor.00g190110 vs. ExPASy TrEMBL
Match: A0A1S3BKM8 (uncharacterized protein LOC103490651 OS=Cucumis melo OX=3656 GN=LOC103490651 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 9.51e-04
Identity = 20/26 (76.92%), Postives = 25/26 (96.15%), Query Frame = 0 

Query: 1   MARDLNSSPWSSLMDNEVYTTGRELK 26
           MARDLNS+PWSSL+D+EV TTGRE++
Sbjct: 851 MARDLNSTPWSSLVDDEVNTTGREVE 876

The following BLAST results are available for this feature:
BLAST of Csor.00g190110 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g190110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6577810.12.25e-47100.00hypothetical protein SDJN03_25384, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022145279.15.59e-0480.77uncharacterized protein LOC111014768 isoform X2 [Momordica charantia][more]
XP_022145277.15.60e-0480.77uncharacterized protein LOC111014768 isoform X1 [Momordica charantia] >XP_022145... [more]
BLAST of Csor.00g190110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CUS22.71e-0480.77uncharacterized protein LOC111014768 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CW532.71e-0480.77uncharacterized protein LOC111014768 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A5D3CJM89.47e-0476.92RB1-inducible coiled-coil protein 1, putative isoform 1 OS=Cucumis melo var. mak... [more]
A0A1S3BKM89.51e-0476.92uncharacterized protein LOC103490651 OS=Cucumis melo OX=3656 GN=LOC103490651 PE=... [more]
BLAST of Csor.00g190110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g190110.m01Csor.00g190110.m01mRNA