Csor.00g189980 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g189980
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	DNA-directed RNA polymerase II subunit RPB1-like
Location	Csor_Chr16: 9286891 .. 9287271 (-)
RNA-Seq Expression	Csor.00g189980
Synteny	Csor.00g189980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATCTATTGTTGTGCAGAATGCGGAGCAAATCTGAATCTGAATTCCAGTCATCTCTTCCCGCCGGATTTCTATTTCGAGGCCGGAAACAAGGGCACGCTTTCGTTTTCCTTGATCGACTCCACCAAGTTCAGGCTCGAGAAAGAGGACAAGCTCCGGCCATTCTTCGAGACCGTCAACTATTGGGGAATCCAGCGGAATCGCACCAAGATCAAGTGCAATTCATGTGCGCGTCTCGTCGGCTATGTTTACGACGATGGGCCTCCTCTCACCGATAGTCCTGGTCAGTACCACTTCGGACCTAGTCAGGTTATTCCCCGAGCTCCTAGATACAGATTCAAGATCAAGGAGCTTCGGATTTCCTCTGAGAGTTGA

mRNA sequence

ATGGCTTCCATCTATTGTTGTGCAGAATGCGGAGCAAATCTGAATCTGAATTCCAGTCATCTCTTCCCGCCGGATTTCTATTTCGAGGCCGGAAACAAGGGCACGCTTTCGTTTTCCTTGATCGACTCCACCAAGTTCAGGCTCGAGAAAGAGGACAAGCTCCGGCCATTCTTCGAGACCGTCAACTATTGGGGAATCCAGCGGAATCGCACCAAGATCAAGTGCAATTCATGTGCGCGTCTCGTCGGCTATGTTTACGACGATGGGCCTCCTCTCACCGATAGTCCTGGTCAGTACCACTTCGGACCTAGTCAGGTTATTCCCCGAGCTCCTAGATACAGATTCAAGATCAAGGAGCTTCGGATTTCCTCTGAGAGTTGA

Coding sequence (CDS)

ATGGCTTCCATCTATTGTTGTGCAGAATGCGGAGCAAATCTGAATCTGAATTCCAGTCATCTCTTCCCGCCGGATTTCTATTTCGAGGCCGGAAACAAGGGCACGCTTTCGTTTTCCTTGATCGACTCCACCAAGTTCAGGCTCGAGAAAGAGGACAAGCTCCGGCCATTCTTCGAGACCGTCAACTATTGGGGAATCCAGCGGAATCGCACCAAGATCAAGTGCAATTCATGTGCGCGTCTCGTCGGCTATGTTTACGACGATGGGCCTCCTCTCACCGATAGTCCTGGTCAGTACCACTTCGGACCTAGTCAGGTTATTCCCCGAGCTCCTAGATACAGATTCAAGATCAAGGAGCTTCGGATTTCCTCTGAGAGTTGA

Protein sequence

MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKELRISSES

Homology

[Close]

BLAST of Csor.00g189980 vs. NCBI nr
Match: XP_022923554.1 (uncharacterized protein LOC111431209 [Cucurbita moschata] >KAG6577797.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015836.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268 bits (684), Expect = 1.38e-90
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60
           MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60

Query: 61  VNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120
           VNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL
Sbjct: 61  VNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120

Query: 121 RISSES 126
           RISSES
Sbjct: 121 RISSES 126

[Close]

BLAST of Csor.00g189980 vs. NCBI nr
Match: XP_023551931.1 (uncharacterized protein LOC111809759 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264 bits (674), Expect = 4.64e-89
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60
           MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60

Query: 61  VNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120
           VNYWGIQR RTKIKCNSCARLVGYVYDDGPPLT+SPGQYHFGPSQVIPRAPRYRFKIKEL
Sbjct: 61  VNYWGIQRKRTKIKCNSCARLVGYVYDDGPPLTESPGQYHFGPSQVIPRAPRYRFKIKEL 120

Query: 121 RISSES 126
           RISSES
Sbjct: 121 RISSES 126

[Close]

BLAST of Csor.00g189980 vs. NCBI nr
Match: XP_022965337.1 (uncharacterized protein LOC111465232 isoform X2 [Cucurbita maxima])

HSP 1 Score: 261 bits (668), Expect = 3.82e-88
Identity = 124/126 (98.41%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60
           MASIY CAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYSCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60

Query: 61  VNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120
           VNYWGIQR RTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL
Sbjct: 61  VNYWGIQRKRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120

Query: 121 RISSES 126
           RISSES
Sbjct: 121 RISSES 126

[Close]

BLAST of Csor.00g189980 vs. NCBI nr
Match: XP_038903300.1 (uncharacterized protein LOC120089928 [Benincasa hispida])

HSP 1 Score: 248 bits (632), Expect = 1.18e-82
Identity = 115/126 (91.27%), Postives = 118/126 (93.65%), Query Frame = 0


Query: 1   MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60
           MASIY C ECG NLNLNSSHLFPPDFYFEAGNKGTLSFS IDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYSCIECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60

Query: 61  VNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120
           VNYWGIQR RTK+KCNSC  LVGY+YDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIK L
Sbjct: 61  VNYWGIQRKRTKLKCNSCGHLVGYLYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKAL 120

Query: 121 RISSES 126
           RI+SES
Sbjct: 121 RITSES 126

[Close]

BLAST of Csor.00g189980 vs. NCBI nr
Match: XP_004146165.1 (uncharacterized protein At4g08330, chloroplastic [Cucumis sativus] >KGN55632.1 hypothetical protein Csa_010173 [Cucumis sativus])

HSP 1 Score: 245 bits (626), Expect = 9.75e-82
Identity = 113/126 (89.68%), Postives = 118/126 (93.65%), Query Frame = 0


Query: 1   MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60
           MASIY C ECG NLNLNS+HLFPPDFYFEAGNKGTLSFS IDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYSCTECGTNLNLNSTHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60

Query: 61  VNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120
           +NYWGIQR RTK+KCNSC  LVGYVYDDGPPLTDSPGQ+HFGPSQVIPRAPRYRFKIK L
Sbjct: 61  LNYWGIQRKRTKLKCNSCGHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120

Query: 121 RISSES 126
           RI+SES
Sbjct: 121 RITSES 126

[Close]

BLAST of Csor.00g189980 vs. ExPASy TrEMBL
Match: A0A6J1E6R2 (uncharacterized protein LOC111431209 OS=Cucurbita moschata OX=3662 GN=LOC111431209 PE=4 SV=1)

HSP 1 Score: 268 bits (684), Expect = 6.69e-91
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60
           MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60

Query: 61  VNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120
           VNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL
Sbjct: 61  VNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120

Query: 121 RISSES 126
           RISSES
Sbjct: 121 RISSES 126

[Close]

BLAST of Csor.00g189980 vs. ExPASy TrEMBL
Match: A0A6J1HK24 (uncharacterized protein LOC111465232 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465232 PE=4 SV=1)

HSP 1 Score: 261 bits (668), Expect = 1.85e-88
Identity = 124/126 (98.41%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60
           MASIY CAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYSCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60

Query: 61  VNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120
           VNYWGIQR RTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL
Sbjct: 61  VNYWGIQRKRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120

Query: 121 RISSES 126
           RISSES
Sbjct: 121 RISSES 126

[Close]

BLAST of Csor.00g189980 vs. ExPASy TrEMBL
Match: A0A0A0L4W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002520 PE=4 SV=1)

HSP 1 Score: 245 bits (626), Expect = 4.72e-82
Identity = 113/126 (89.68%), Postives = 118/126 (93.65%), Query Frame = 0


Query: 1   MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60
           MASIY C ECG NLNLNS+HLFPPDFYFEAGNKGTLSFS IDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYSCTECGTNLNLNSTHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60

Query: 61  VNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120
           +NYWGIQR RTK+KCNSC  LVGYVYDDGPPLTDSPGQ+HFGPSQVIPRAPRYRFKIK L
Sbjct: 61  LNYWGIQRKRTKLKCNSCGHLVGYVYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120

Query: 121 RISSES 126
           RI+SES
Sbjct: 121 RITSES 126

[Close]

BLAST of Csor.00g189980 vs. ExPASy TrEMBL
Match: A0A1S3BJW2 (uncharacterized protein LOC103490667 OS=Cucumis melo OX=3656 GN=LOC103490667 PE=4 SV=1)

HSP 1 Score: 243 bits (620), Expect = 3.88e-81
Identity = 111/126 (88.10%), Postives = 118/126 (93.65%), Query Frame = 0


Query: 1   MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60
           MASIY C+ECG NLNLNSSHLFPPDFYFEAGNKGTLSFS IDSTKFRLEKEDKLRPFFET
Sbjct: 1   MASIYSCSECGTNLNLNSSHLFPPDFYFEAGNKGTLSFSFIDSTKFRLEKEDKLRPFFET 60

Query: 61  VNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120
           +NYWGIQR RTK+KC SC  LVGY+YDDGPPLTDSPGQ+HFGPSQVIPRAPRYRFKIK L
Sbjct: 61  LNYWGIQRKRTKLKCTSCGHLVGYIYDDGPPLTDSPGQFHFGPSQVIPRAPRYRFKIKAL 120

Query: 121 RISSES 126
           RI+SE+
Sbjct: 121 RITSET 126

[Close]

BLAST of Csor.00g189980 vs. ExPASy TrEMBL
Match: A0A6J0ZK38 (uncharacterized protein At4g08330, chloroplastic OS=Herrania umbratica OX=108875 GN=LOC110409529 PE=4 SV=1)

HSP 1 Score: 239 bits (610), Expect = 1.30e-79
Identity = 107/126 (84.92%), Postives = 119/126 (94.44%), Query Frame = 0


Query: 1   MASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFET 60
           MASIYCC ECG NLNL+++HLFPPDFYFEAGNKGTLSF+LID+TKF+LEKEDK+RPFFET
Sbjct: 1   MASIYCCTECGTNLNLSTTHLFPPDFYFEAGNKGTLSFALIDTTKFKLEKEDKIRPFFET 60

Query: 61  VNYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKEL 120
           V+YWGIQR RTKIKCNSC +LVGYVYDDGPPLT+ PGQYHFGPSQVIPRAPRYRFK K L
Sbjct: 61  VDYWGIQRKRTKIKCNSCGKLVGYVYDDGPPLTNGPGQYHFGPSQVIPRAPRYRFKTKAL 120

Query: 121 RISSES 126
           RI+SE+
Sbjct: 121 RITSET 126

[Close]

BLAST of Csor.00g189980 vs. TAIR 10
Match: AT2G17705.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08330.1); Has 135 Blast hits to 135 proteins in 32 species: Archae - 5; Bacteria - 29; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 207.2 bits (526), Expect = 7.6e-54
Identity = 90/125 (72.00%), Postives = 107/125 (85.60%), Query Frame = 0


Query: 2   ASIYCCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETV 61
           ++IY C ECG++LNLN + LFPPDFYFEAGNKGTLSF+ +D+ KFR EKEDK+ PFFET+
Sbjct: 3   STIYTCKECGSDLNLNPNDLFPPDFYFEAGNKGTLSFAAVDAEKFRFEKEDKIMPFFETL 62

Query: 62  NYWGIQRNRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKELR 121
           NYWGIQR RTKIKC SC  L+GY+YDDGPPLT   GQY FGPSQVIPRAPRYRFK K ++
Sbjct: 63  NYWGIQRKRTKIKCTSCNHLIGYIYDDGPPLTGGIGQYGFGPSQVIPRAPRYRFKTKAVQ 122

Query: 122 ISSES 127
           +SS++
Sbjct: 123 VSSQT 127

The following BLAST results are available for this feature:

BLAST of Csor.00g189980 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g189980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923554.1	1.38e-90	100.00	uncharacterized protein LOC111431209 [Cucurbita moschata] >KAG6577797.1 putative...	[more]
XP_023551931.1	4.64e-89	98.41	uncharacterized protein LOC111809759 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022965337.1	3.82e-88	98.41	uncharacterized protein LOC111465232 isoform X2 [Cucurbita maxima]	[more]
XP_038903300.1	1.18e-82	91.27	uncharacterized protein LOC120089928 [Benincasa hispida]	[more]
XP_004146165.1	9.75e-82	89.68	uncharacterized protein At4g08330, chloroplastic [Cucumis sativus] >KGN55632.1 h...	[more]

BLAST of Csor.00g189980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E6R2	6.69e-91	100.00	uncharacterized protein LOC111431209 OS=Cucurbita moschata OX=3662 GN=LOC1114312...	[more]
A0A6J1HK24	1.85e-88	98.41	uncharacterized protein LOC111465232 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0L4W0	4.72e-82	89.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002520 PE=4 SV=1	[more]
A0A1S3BJW2	3.88e-81	88.10	uncharacterized protein LOC103490667 OS=Cucumis melo OX=3656 GN=LOC103490667 PE=...	[more]
A0A6J0ZK38	1.30e-79	84.92	uncharacterized protein At4g08330, chloroplastic OS=Herrania umbratica OX=108875...	[more]

BLAST of Csor.00g189980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17705.1	7.6e-54	72.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.170.150.20	Peptide methionine sulfoxide reductase.	coord: 1..104 e-value: 3.4E-5 score: 25.4
None	No IPR available	PANTHER	PTHR33674	METHIONINE-S-OXIDE REDUCTASE	coord: 1..125
None	No IPR available	PANTHER	PTHR33674:SF5	METHIONINE-S-OXIDE REDUCTASE	coord: 1..125
IPR011057	Mss4-like superfamily	SUPERFAMILY	51316	Mss4-like	coord: 4..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g189980.m01	Csor.00g189980.m01	mRNA