Csor.00g189940 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g189940
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr16: 9270295 .. 9270784 (+)
RNA-Seq Expression	Csor.00g189940
Synteny	Csor.00g189940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTGTGGAGAGGGAAATGGATGGAGGGCATGTATGGAGTATGAACCACCTTCTAATAATAATAACATGACAGAGAAGCCGATGGAATTGATTCAGAATTTACCAAATTTGCCATTCCACTTCACCTGCCGGATGCCCTCCTCCTCCTCCTCTAATCCATGCAGTTTCATTCCCACACCCTCCTGGTGTCGCCGCCGCCGCTGCTGCTGCTGCTGCCACCGCCACCGCCAGCGCCAGCGCCGCCGCCGCCACGCCATTAAAAATCGATGTTCTTCATTGCTCCTTTGTCTTTCCTAGACCCATCAACCTTCGACCTGACCACCGTGTGGTTCATCGCCCTCATCCTCCTCCTCTCCCTCCTCTCCCTGACCTTCATCTTCCACCTCCGCCTCAAATCCCGGACCTCCCACCACCTCCAACGCTTCAACTCTCTGTGGACCGTCCGATTCCTCCTGGTGACCTTCATCTCCCTATGGGCACTGAATGA

mRNA sequence

ATGAGAATTTACCAAATTTGCCATTCCACTTCACCTGCCGGATGCCCTCCTCCTCCTCCTCTAATCCATGCAGTTTCATTCCCACACCCTCCTGGTGTCGCCGCCGCCGCTGCTGCTGCTGCTGCCACCGCCACCGCCAGCGCCAGCGCCGCCGCCGCCACGCCATTAAAAATCGATGTTCTTCATTGCTCCTTTGTCTTTCCTAGACCCATCAACCTTCGACCTGACCACCGTGTGGTTCATCGCCCTCATCCTCCTCCTCTCCCTCCTCTCCCTGACCTTCATCTTCCACCTCCGCCTCAAATCCCGGACCTCCCACCACCTCCAACGCTTCAACTCTCTGTGGACCGTCCGATTCCTCCTGGTGACCTTCATCTCCCTATGGGCACTGAATGA

Coding sequence (CDS)

ATGAGAATTTACCAAATTTGCCATTCCACTTCACCTGCCGGATGCCCTCCTCCTCCTCCTCTAATCCATGCAGTTTCATTCCCACACCCTCCTGGTGTCGCCGCCGCCGCTGCTGCTGCTGCTGCCACCGCCACCGCCAGCGCCAGCGCCGCCGCCGCCACGCCATTAAAAATCGATGTTCTTCATTGCTCCTTTGTCTTTCCTAGACCCATCAACCTTCGACCTGACCACCGTGTGGTTCATCGCCCTCATCCTCCTCCTCTCCCTCCTCTCCCTGACCTTCATCTTCCACCTCCGCCTCAAATCCCGGACCTCCCACCACCTCCAACGCTTCAACTCTCTGTGGACCGTCCGATTCCTCCTGGTGACCTTCATCTCCCTATGGGCACTGAATGA

Protein sequence

MRIYQICHSTSPAGCPPPPPLIHAVSFPHPPGVAAAAAAAAATATASASAAAATPLKIDVLHCSFVFPRPINLRPDHRVVHRPHPPPLPPLPDLHLPPPPQIPDLPPPPTLQLSVDRPIPPGDLHLPMGTE

Homology

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BLAST of Csor.00g189940 vs. NCBI nr
Match: KAG6577793.1 (hypothetical protein SDJN03_25367, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248 bits (634), Expect = 8.52e-83
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MRIYQICHSTSPAGCPPPPPLIHAVSFPHPPGVAAAAAAAAATATASASAAAATPLKIDV 60
           MRIYQICHSTSPAGCPPPPPLIHAVSFPHPPGVAAAAAAAAATATASASAAAATPLKIDV
Sbjct: 1   MRIYQICHSTSPAGCPPPPPLIHAVSFPHPPGVAAAAAAAAATATASASAAAATPLKIDV 60

Query: 61  LHCSFVFPRPINLRPDHRVVHRPHPPPLPPLPDLHLPPPPQIPDLPPPPTLQLSVDRPIP 120
           LHCSFVFPRPINLRPDHRVVHRPHPPPLPPLPDLHLPPPPQIPDLPPPPTLQLSVDRPIP
Sbjct: 61  LHCSFVFPRPINLRPDHRVVHRPHPPPLPPLPDLHLPPPPQIPDLPPPPTLQLSVDRPIP 120

Query: 121 PGDLHLPMGTE 131
           PGDLHLPMGTE
Sbjct: 121 PGDLHLPMGTE 131

The following BLAST results are available for this feature:

BLAST of Csor.00g189940 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g189940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577793.1	8.52e-83	100.00	hypothetical protein SDJN03_25367, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g189940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g189940 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g189940.m01	Csor.00g189940.m01	mRNA