Csor.00g189920 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codonsinglepolypeptidestop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTTTCAACAAGCTCTTCTTCTTCTTCTACAACAACCTCATCGGCTTCCGAACCAGCCCGACACTCAAGCAAGCAACCCCGCTTCCTCGTAGTGCCGATTCGAGCCTTCGACCTATGACACCTGATGATTGTGTCGCAGCTCTTTCGAGCCCTGAGAAGGCGTTGGAAGGCGAGACATGTTGCGTATGCTTGTCGTGTATGGGAAACAAGGACAAAGACGAGGGAATTGGCACGAGTGTTCTTCCTTGCTCCCACGAGTTTCATAAGATATGTCTCGATCGATGGTTTGAAGAGTGTCGGAGAACTTGTCCGATATGCCGATATTCAATGGAAGGAGGAGGGAATAATCATGAAGATGGGAGTAATGAAATGCTAACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA ATGGTTTTCAACAAGCTCTTCTTCTTCTTCTACAACAACCTCATCGGCTTCCGAACCAGCCCGACACTCAAGCAAGCAACCCCGCTTCCTCGTAGTGCCGATTCGAGCCTTCGACCTATGACACCTGATGATTGTGTCGCAGCTCTTTCGAGCCCTGAGAAGGCGTTGGAAGGCGAGACATGTTGCGTATGCTTGTCGTGTATGGGAAACAAGGACAAAGACGAGGGAATTGGCACGAGTGTTCTTCCTTGCTCCCACGAGTTTCATAAGATATGTCTCGATCGATGGTTTGAAGAGTGTCGGAGAACTTGTCCGATATGCCGATATTCAATGGAAGGAGGAGGGAATAATCATGAAGATGGGAGTAATGAAATGCTAACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA ATGGTTTTCAACAAGCTCTTCTTCTTCTTCTACAACAACCTCATCGGCTTCCGAACCAGCCCGACACTCAAGCAAGCAACCCCGCTTCCTCGTAGTGCCGATTCGAGCCTTCGACCTATGACACCTGATGATTGTGTCGCAGCTCTTTCGAGCCCTGAGAAGGCGTTGGAAGGCGAGACATGTTGCGTATGCTTGTCGTGTATGGGAAACAAGGACAAAGACGAGGGAATTGGCACGAGTGTTCTTCCTTGCTCCCACGAGTTTCATAAGATATGTCTCGATCGATGGTTTGAAGAGTGTCGGAGAACTTGTCCGATATGCCGATATTCAATGGAAGGAGGAGGGAATAATCATGAAGATGGGAGTAATGAAATGCTAACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA MVFNKLFFFFYNNLIGFRTSPTLKQATPLPRSADSSLRPMTPDDCVAALSSPEKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGNNHEDGSNEMLTDEMVIWFSSFHTSGF Homology
BLAST of Csor.00g189920 vs. ExPASy Swiss-Prot
Match: Q91XF4 (E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.2e-07 Identity = 23/67 (34.33%), Postives = 37/67 (55.22%), Query Frame = 0
BLAST of Csor.00g189920 vs. ExPASy Swiss-Prot
Match: Q5XIL0 (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus OX=10116 GN=Rnf167 PE=2 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.5e-07 Identity = 22/67 (32.84%), Postives = 37/67 (55.22%), Query Frame = 0
BLAST of Csor.00g189920 vs. ExPASy Swiss-Prot
Match: Q4R6Y5 (E3 ubiquitin-protein ligase ZNRF4 OS=Macaca fascicularis OX=9541 GN=ZNRF4 PE=2 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 2.0e-07 Identity = 25/72 (34.72%), Postives = 42/72 (58.33%), Query Frame = 0
BLAST of Csor.00g189920 vs. ExPASy Swiss-Prot
Match: Q9NVW2 (E3 ubiquitin-protein ligase RLIM OS=Homo sapiens OX=9606 GN=RLIM PE=1 SV=3) HSP 1 Score: 56.6 bits (135), Expect = 2.6e-07 Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0
BLAST of Csor.00g189920 vs. ExPASy Swiss-Prot
Match: Q9WTV7 (E3 ubiquitin-protein ligase RLIM OS=Mus musculus OX=10090 GN=Rlim PE=1 SV=2) HSP 1 Score: 56.6 bits (135), Expect = 2.6e-07 Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0
BLAST of Csor.00g189920 vs. NCBI nr
Match: KAG6577791.1 (Protein goliath, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 305 bits (782), Expect = 5.16e-105 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
BLAST of Csor.00g189920 vs. NCBI nr
Match: KAG7015830.1 (Protein goliath, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 303 bits (776), Expect = 4.24e-104 Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0
BLAST of Csor.00g189920 vs. NCBI nr
Match: XP_038906276.1 (E3 ubiquitin-protein ligase RNF167-like [Benincasa hispida]) HSP 1 Score: 238 bits (606), Expect = 4.09e-78 Identity = 113/147 (76.87%), Postives = 128/147 (87.07%), Query Frame = 0
BLAST of Csor.00g189920 vs. NCBI nr
Match: KAE8649999.1 (hypothetical protein Csa_010276, partial [Cucumis sativus]) HSP 1 Score: 231 bits (589), Expect = 1.26e-75 Identity = 109/140 (77.86%), Postives = 124/140 (88.57%), Query Frame = 0
BLAST of Csor.00g189920 vs. NCBI nr
Match: KAA0052944.1 (E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa] >TYK11400.1 E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa]) HSP 1 Score: 229 bits (583), Expect = 1.45e-74 Identity = 113/149 (75.84%), Postives = 124/149 (83.22%), Query Frame = 0
BLAST of Csor.00g189920 vs. ExPASy TrEMBL
Match: A0A0A0L4W7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002620 PE=4 SV=1) HSP 1 Score: 240 bits (613), Expect = 1.59e-79 Identity = 113/145 (77.93%), Postives = 129/145 (88.97%), Query Frame = 0
BLAST of Csor.00g189920 vs. ExPASy TrEMBL
Match: A0A5D3CJ45 (E3 ubiquitin-protein ligase RNF13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00530 PE=4 SV=1) HSP 1 Score: 229 bits (583), Expect = 7.01e-75 Identity = 113/149 (75.84%), Postives = 124/149 (83.22%), Query Frame = 0
BLAST of Csor.00g189920 vs. ExPASy TrEMBL
Match: A0A6J1CW69 (E3 ubiquitin-protein ligase SDIR1-like OS=Momordica charantia OX=3673 GN=LOC111014786 PE=4 SV=1) HSP 1 Score: 183 bits (465), Expect = 4.91e-57 Identity = 99/148 (66.89%), Postives = 111/148 (75.00%), Query Frame = 0
BLAST of Csor.00g189920 vs. ExPASy TrEMBL
Match: A0A5D2RL25 (RING-type domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A02G207900v1 PE=4 SV=1) HSP 1 Score: 117 bits (292), Expect = 9.29e-31 Identity = 64/147 (43.54%), Postives = 89/147 (60.54%), Query Frame = 0
BLAST of Csor.00g189920 vs. ExPASy TrEMBL
Match: A0A2I4FD42 (E3 ubiquitin-protein ligase RNF165-like OS=Juglans regia OX=51240 GN=LOC108997662 PE=4 SV=1) HSP 1 Score: 115 bits (288), Expect = 3.54e-30 Identity = 68/153 (44.44%), Postives = 88/153 (57.52%), Query Frame = 0
BLAST of Csor.00g189920 vs. TAIR 10
Match: AT3G51325.1 (RING/U-box superfamily protein ) HSP 1 Score: 73.2 bits (178), Expect = 1.9e-13 Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 0
BLAST of Csor.00g189920 vs. TAIR 10
Match: AT4G32600.1 (RING/U-box superfamily protein ) HSP 1 Score: 56.6 bits (135), Expect = 1.9e-08 Identity = 32/84 (38.10%), Postives = 47/84 (55.95%), Query Frame = 0
BLAST of Csor.00g189920 vs. TAIR 10
Match: AT1G35630.1 (Protease-associated (PA) RING/U-box zinc finger family protein ) HSP 1 Score: 56.2 bits (134), Expect = 2.4e-08 Identity = 21/66 (31.82%), Postives = 35/66 (53.03%), Query Frame = 0
BLAST of Csor.00g189920 vs. TAIR 10
Match: AT5G45290.1 (RING/U-box superfamily protein ) HSP 1 Score: 55.8 bits (133), Expect = 3.2e-08 Identity = 21/45 (46.67%), Postives = 29/45 (64.44%), Query Frame = 0
BLAST of Csor.00g189920 vs. TAIR 10
Match: AT1G24580.1 (RING/U-box superfamily protein ) HSP 1 Score: 55.1 bits (131), Expect = 5.4e-08 Identity = 24/56 (42.86%), Postives = 34/56 (60.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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