Csor.00g189780 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g189780
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	cold shock domain-containing protein 3-like
Location	Csor_Chr16: 9171646 .. 9172437 (+)
RNA-Seq Expression	Csor.00g189780
Synteny	Csor.00g189780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAGAGAGATTGACTGGAGTGGTTCAGTGGTTTAACGATTCCAAGGGGTTTGGCTTTATCAAGCCAGATGTGGAAGGCCCGGATCTGTTTGTTCATCAATCCTCCATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGATCATGTTGAGTTTCAGATCGCCCCTGGTGATGATGGGAAATCGAAAGCCATTGAGGTCGTTGCGCTGGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGAAGGGGTGGCCGCGGCGGTGGCGGTGGAGGTTATGGGTTTGGTGGATGGAGGGGTGGCGATAGGCGTAATGGGAGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTGCTAGTAACCGCGGCGGCGGTGGTGGTGGTGGTGGTTGTTTTACTTGCGGTGAAGTCGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGCGGCGGCGGCGGTGCAGGTGGTGGGGCTTGCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGGGCTGGAGGTGGAAGTGGAGGTGGGGGTGGTGGTTGTTTTAATTGTGGAGAATATGGGCATTTAGCCAGAGATTGCCAGAATGAAAGTCGTGGCAGCGGAGGCGGGGGCGGCGGAAGATTCGGTGGCGGTGGTGCAAACACTTGCTTCAATTGTGGGAAATCTGGGCATTTTGCTAGGGAGTGTCCTGATGTAAGGAGTGAGACAGAGTAA

mRNA sequence

ATGGCGGAAGAGAGATTGACTGGAGTGGTTCAGTGGTTTAACGATTCCAAGGGGTTTGGCTTTATCAAGCCAGATGTGGAAGGCCCGGATCTGTTTGTTCATCAATCCTCCATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGATCATGTTGAGTTTCAGATCGCCCCTGGTGATGATGGGAAATCGAAAGCCATTGAGGTCGTTGCGCTGGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGAAGGGGTGGCCGCGGCGGTGGCGGTGGAGGTTATGGGTTTGGTGGATGGAGGGGTGGCGATAGGCGTAATGGGAGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTGCTAGTAACCGCGGCGGCGGTGGTGGTGGTGGTGGTTGTTTTACTTGCGGTGAAGTCGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGCGGCGGCGGCGGTGCAGGTGGTGGGGCTTGCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGGGCTGGAGGTGGAAGTGGAGGTGGGGGTGGTGGTTGTTTTAATTGTGGAGAATATGGGCATTTAGCCAGAGATTGCCAGAATGAAAGTCGTGGCAGCGGAGGCGGGGGCGGCGGAAGATTCGGTGGCGGTGGTGCAAACACTTGCTTCAATTGTGGGAAATCTGGGCATTTTGCTAGGGAGTGTCCTGATGTAAGGAGTGAGACAGAGTAA

Coding sequence (CDS)

ATGGCGGAAGAGAGATTGACTGGAGTGGTTCAGTGGTTTAACGATTCCAAGGGGTTTGGCTTTATCAAGCCAGATGTGGAAGGCCCGGATCTGTTTGTTCATCAATCCTCCATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGATCATGTTGAGTTTCAGATCGCCCCTGGTGATGATGGGAAATCGAAAGCCATTGAGGTCGTTGCGCTGGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGAAGGGGTGGCCGCGGCGGTGGCGGTGGAGGTTATGGGTTTGGTGGATGGAGGGGTGGCGATAGGCGTAATGGGAGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTGCTAGTAACCGCGGCGGCGGTGGTGGTGGTGGTGGTTGTTTTACTTGCGGTGAAGTCGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGCGGCGGCGGCGGTGCAGGTGGTGGGGCTTGCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGGGCTGGAGGTGGAAGTGGAGGTGGGGGTGGTGGTTGTTTTAATTGTGGAGAATATGGGCATTTAGCCAGAGATTGCCAGAATGAAAGTCGTGGCAGCGGAGGCGGGGGCGGCGGAAGATTCGGTGGCGGTGGTGCAAACACTTGCTTCAATTGTGGGAAATCTGGGCATTTTGCTAGGGAGTGTCCTGATGTAAGGAGTGAGACAGAGTAA

Protein sequence

MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE

Homology

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BLAST of Csor.00g189780 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.2e-53
Identity = 154/300 (51.33%), Postives = 181/300 (60.33%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNF--GGGG-----GRGGR-----GGGGGGYGFGGWRGGDRRNG 124
           KAIEV A  G S N+++N   G GG     G  G       GG GG  FGG  GG RR+G
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGG--GGGRRSG 129

Query: 125 SSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGG-GCFTCGEVGHLARDCPRGNSGG 184
               G G CY CG+ GH ARDC ++   N GGGGGGG  C++CGEVGHLA+DC RG SGG
Sbjct: 130 ----GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDC-RGGSGG 189

Query: 185 G--------GAGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQN 244
                    G+GG  CY CGG GH ARDC + G GG  GGGG  C+ CG  GH+A+ C +
Sbjct: 190 NRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG-GGNVGGGGSTCYTCGGVGHIAKVCTS 249

Query: 245 ESRGSGGGGGGRF-----------------------GGGGANTCFNCGKSGHFARECPDV 259
           +   SGGGGGGR                        GGGG+N CF CGK GHFAREC  V
Sbjct: 250 KI-PSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFARECTSV 300

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BLAST of Csor.00g189780 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.8e-49
Identity = 145/293 (49.49%), Postives = 165/293 (56.31%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGY------------GFGGWRGGDRRNG 124
           KA+ V A  G S  + +N  G G R G GGG G Y            G GG  GG  R  
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRG-GGGSGCYNCGELGHISKDCGIGGGGGGGERR- 129

Query: 125 SSGAGGGGCYQCGEQGHLARDCTRASN---RGG-GGGGGGCFTCGEVGHLARDCPRGNSG 184
               GG GCY CG+ GH ARDCT A N   RG   GG  GC+TCG+VGH+ARDC + + G
Sbjct: 130 --SRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVG 189

Query: 185 GGG------AGGGACYNCGGFGHLARDCNRGGAGGG--SGGGGGG-CFNCGEYGHLARDC 244
            G        G   CY CG  GH ARDC +  A G   SGGGG G C++CG  GH+ARDC
Sbjct: 190 NGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC 249

Query: 245 QNESRGSGG----GGGGRF----------GGGGANTCFNCGKSGHFARECPDV 259
             + + S G    GG G            GGG  N C+ CGK GHFAREC  V
Sbjct: 250 ATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECSSV 298

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BLAST of Csor.00g189780 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.1e-38
Identity = 131/264 (49.62%), Postives = 149/264 (56.44%), Query Frame = 0


Query: 1   MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA 60
           MAEE   R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++ 
Sbjct: 1   MAEESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVE 60

Query: 61  PGDDGKSKAIEVVALDGSS--GNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSG 120
            G DG++KA++V   DG++  G R    GGGGG GGRGGGG G G GG+ GG  R GS G
Sbjct: 61  SGGDGRTKAVDVTGPDGAAVQGGR----GGGGGGGGRGGGGYGGGSGGY-GGGGRGGSRG 120

Query: 121 AGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGG 180
            GGG     G  G            GGGG GGG               R   GGGG GGG
Sbjct: 121 YGGGD----GGYG------------GGGGYGGG--------------SRYGGGGGGYGGG 180

Query: 181 ACYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRF- 240
                            GG GGG  GGG GCF CGE GH ARDC   S+  GGGGGGRF 
Sbjct: 181 -----------------GGYGGGGSGGGSGCFKCGESGHFARDC---SQSGGGGGGGRFG 209

Query: 241 ---GGGGANTCFNCGKSGHFAREC 256
              GGGG   C+ CG+ GHFAREC
Sbjct: 241 GGGGGGGGGGCYKCGEDGHFAREC 209

[Close]

BLAST of Csor.00g189780 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.0e-34
Identity = 105/216 (48.61%), Postives = 123/216 (56.94%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64  SKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGGCYQ 123
            KAIEV   DG+    + N GGGG  GGRGG GGG G GG RGG    GS G G GG   
Sbjct: 73  PKAIEVSGPDGAP--VQGNSGGGGSSGGRGGFGGGGGRGGGRGG----GSYGGGYGG--- 132

Query: 124 CGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGF 183
                        +  RGGGGG   CF CGE GH+AR+C +G  G  G GGG  Y  GG 
Sbjct: 133 -----------RGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG- 192

Query: 184 GHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDC 220
                       GGG GGGG  C++CGE GH ARDC
Sbjct: 193 ------------GGGGGGGGLSCYSCGESGHFARDC 195

[Close]

BLAST of Csor.00g189780 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.0e-33
Identity = 106/226 (46.90%), Postives = 127/226 (56.19%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64  SKAIEVVALDGSSGNRRDNFGGGGGRGGRGGG-----GGGYGFGGWRGGDRRNGSSGAGG 123
            KAI+V   DG+        G  GGRGG GGG     G G G+GG  GG    G  G GG
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRGG 128

Query: 124 GGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACY 183
             CY+CGE GH+ARDC+      GGGG GG                   GGGG GGG  Y
Sbjct: 129 SDCYKCGEPGHMARDCSE-----GGGGYGG-------------------GGGGYGGGGGY 188

Query: 184 NCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESR 225
             GG G+       GG G G GGGGG C++CGE GH ARDC +  R
Sbjct: 189 GGGGGGY-------GGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]

BLAST of Csor.00g189780 vs. NCBI nr
Match: KAG6577777.1 (Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015817.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 516 bits (1330), Expect = 1.49e-184
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120

Query: 121 CYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNC 180
           CYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNC
Sbjct: 121 CYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNC 180

Query: 181 GGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGAN 240
           GGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGAN
Sbjct: 181 GGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGAN 240

Query: 241 TCFNCGKSGHFARECPDVRSETE 263
           TCFNCGKSGHFARECPDVRSETE
Sbjct: 241 TCFNCGKSGHFARECPDVRSETE 263

[Close]

BLAST of Csor.00g189780 vs. NCBI nr
Match: XP_022923189.1 (cold shock domain-containing protein 3-like [Cucurbita moschata])

HSP 1 Score: 501 bits (1290), Expect = 1.86e-178
Identity = 260/266 (97.74%), Postives = 260/266 (97.74%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120

Query: 121 CYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGG---AGGGAC 180
           CYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGG   AGGGAC
Sbjct: 121 CYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGAC 180

Query: 181 YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGG 240
           YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGG   RFGGG
Sbjct: 181 YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGG---RFGGG 240

Query: 241 GANTCFNCGKSGHFARECPDVRSETE 263
           GANTCFNCGKSGHFARECPDVRSETE
Sbjct: 241 GANTCFNCGKSGHFARECPDVRSETE 263

[Close]

BLAST of Csor.00g189780 vs. NCBI nr
Match: XP_023551806.1 (cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 499 bits (1284), Expect = 1.59e-177
Identity = 261/266 (98.12%), Postives = 261/266 (98.12%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120

Query: 121 CYQCGEQGHLARDCTRASNRGG-GGGGGGCFTCGEVGHLARDCPRGNSGGGG--AGGGAC 180
           CYQCGEQGHLARDCTRASNRGG GGGGGGCFTCGEVGHLARDCPRGNSGGGG  AGGGAC
Sbjct: 121 CYQCGEQGHLARDCTRASNRGGVGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGAC 180

Query: 181 YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGG 240
           YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGG  RFGGG
Sbjct: 181 YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGG--RFGGG 240

Query: 241 GANTCFNCGKSGHFARECPDVRSETE 263
           GANTCFNCGKSGHFARECPDVRSETE
Sbjct: 241 GANTCFNCGKSGHFARECPDVRSETE 264

[Close]

BLAST of Csor.00g189780 vs. NCBI nr
Match: XP_022965328.1 (cold shock domain-containing protein 3-like [Cucurbita maxima])

HSP 1 Score: 497 bits (1280), Expect = 6.00e-177
Identity = 260/264 (98.48%), Postives = 260/264 (98.48%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120

Query: 121 CYQCGEQGHLARDCTRASNRGGGGGGGG-CFTCGEVGHLARDCPRGNSGGGGAGGGACYN 180
           CYQCGEQGHLARDCTRASNRGGGGGGGG CFTCGEVGHLARDCPRGNSGGG AGGGACYN
Sbjct: 121 CYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGG-AGGGACYN 180

Query: 181 CGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGA 240
           CGGFGHLARDCNRGGAGGGSGGGGG CFNCGEYGHLARDCQNESRGSGGGGG RFGGGGA
Sbjct: 181 CGGFGHLARDCNRGGAGGGSGGGGGSCFNCGEYGHLARDCQNESRGSGGGGG-RFGGGGA 240

Query: 241 NTCFNCGKSGHFARECPDVRSETE 263
           NTCFNCGKSGHFARECPDVRSETE
Sbjct: 241 NTCFNCGKSGHFARECPDVRSETE 262

[Close]

BLAST of Csor.00g189780 vs. NCBI nr
Match: XP_004146143.1 (cold shock domain-containing protein 3 [Cucumis sativus] >KGN55657.1 hypothetical protein Csa_011109 [Cucumis sativus])

HSP 1 Score: 468 bits (1205), Expect = 2.41e-165
Identity = 252/272 (92.65%), Postives = 255/272 (93.75%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGG-RGGRGGGGGG-YGFGGWRGGDRRNGSSGAGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGG RGGRGGGGGG YGFGGWRGGDRRNG+SGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120

Query: 121 GGCYQCGEQGHLARDCTRASNRGGGGGGGG-CFTCGEVGHLARDCPRGNSGGGGAGGG-- 180
           GGCYQCGEQGHLARDCTR SNRGGGGGGGG CFTCGEVGHLARDCPRGNSGGGG GGG  
Sbjct: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180

Query: 181 --ACYNCGGFGHLARDCNRGGAGGGSGGGGGG--CFNCGEYGHLARDCQNESRGSGGGGG 240
             ACYNCGGFGHLARDCNRGGAGGGSGGGGGG  CFNCGEYGH+ARDCQNESRGSGGGGG
Sbjct: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGG 240

Query: 241 GRFGGGG-----ANTCFNCGKSGHFARECPDV 258
           GRFGGGG     +NTCFNCGKSGHFARECPD 
Sbjct: 241 GRFGGGGGGGGGSNTCFNCGKSGHFARECPDA 272

[Close]

BLAST of Csor.00g189780 vs. ExPASy TrEMBL
Match: A0A6J1E5N5 (cold shock domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111430958 PE=4 SV=1)

HSP 1 Score: 501 bits (1290), Expect = 9.01e-179
Identity = 260/266 (97.74%), Postives = 260/266 (97.74%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120

Query: 121 CYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGG---AGGGAC 180
           CYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGG   AGGGAC
Sbjct: 121 CYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGAC 180

Query: 181 YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGG 240
           YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGG   RFGGG
Sbjct: 181 YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGG---RFGGG 240

Query: 241 GANTCFNCGKSGHFARECPDVRSETE 263
           GANTCFNCGKSGHFARECPDVRSETE
Sbjct: 241 GANTCFNCGKSGHFARECPDVRSETE 263

[Close]

BLAST of Csor.00g189780 vs. ExPASy TrEMBL
Match: A0A6J1HNK3 (cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111465226 PE=4 SV=1)

HSP 1 Score: 497 bits (1280), Expect = 2.91e-177
Identity = 260/264 (98.48%), Postives = 260/264 (98.48%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120

Query: 121 CYQCGEQGHLARDCTRASNRGGGGGGGG-CFTCGEVGHLARDCPRGNSGGGGAGGGACYN 180
           CYQCGEQGHLARDCTRASNRGGGGGGGG CFTCGEVGHLARDCPRGNSGGG AGGGACYN
Sbjct: 121 CYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGG-AGGGACYN 180

Query: 181 CGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGGGA 240
           CGGFGHLARDCNRGGAGGGSGGGGG CFNCGEYGHLARDCQNESRGSGGGGG RFGGGGA
Sbjct: 181 CGGFGHLARDCNRGGAGGGSGGGGGSCFNCGEYGHLARDCQNESRGSGGGGG-RFGGGGA 240

Query: 241 NTCFNCGKSGHFARECPDVRSETE 263
           NTCFNCGKSGHFARECPDVRSETE
Sbjct: 241 NTCFNCGKSGHFARECPDVRSETE 262

[Close]

BLAST of Csor.00g189780 vs. ExPASy TrEMBL
Match: A0A0A0L4X7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002765 PE=4 SV=1)

HSP 1 Score: 468 bits (1205), Expect = 1.17e-165
Identity = 252/272 (92.65%), Postives = 255/272 (93.75%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGG-RGGRGGGGGG-YGFGGWRGGDRRNGSSGAGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGG RGGRGGGGGG YGFGGWRGGDRRNG+SGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120

Query: 121 GGCYQCGEQGHLARDCTRASNRGGGGGGGG-CFTCGEVGHLARDCPRGNSGGGGAGGG-- 180
           GGCYQCGEQGHLARDCTR SNRGGGGGGGG CFTCGEVGHLARDCPRGNSGGGG GGG  
Sbjct: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180

Query: 181 --ACYNCGGFGHLARDCNRGGAGGGSGGGGGG--CFNCGEYGHLARDCQNESRGSGGGGG 240
             ACYNCGGFGHLARDCNRGGAGGGSGGGGGG  CFNCGEYGH+ARDCQNESRGSGGGGG
Sbjct: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGG 240

Query: 241 GRFGGGG-----ANTCFNCGKSGHFARECPDV 258
           GRFGGGG     +NTCFNCGKSGHFARECPD 
Sbjct: 241 GRFGGGGGGGGGSNTCFNCGKSGHFARECPDA 272

[Close]

BLAST of Csor.00g189780 vs. ExPASy TrEMBL
Match: A0A6J1GAE9 (cold shock protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452385 PE=4 SV=1)

HSP 1 Score: 466 bits (1198), Expect = 8.82e-165
Identity = 248/264 (93.94%), Postives = 248/264 (93.94%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           M EERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGG  YGFGGWRGGDRRNGSSGAGGGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGG--YGFGGWRGGDRRNGSSGAGGGG 120

Query: 121 CYQCGEQGHLARDCTRASNRGGGGG-GGGCFTCGEVGHLARDCPRGNSGGGG--AGGGAC 180
           CYQCGEQGHLARDC RASNRGGGGG GGGCFTCGEVGHLARDCPRGNSGGGG  AGGG C
Sbjct: 121 CYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGC 180

Query: 181 YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGGGGRFGGG 240
           YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESR SGGGG  RFGGG
Sbjct: 181 YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRNSGGGG--RFGGG 240

Query: 241 G---ANTCFNCGKSGHFARECPDV 258
           G   ANTCFNCGKSGHFARECPD 
Sbjct: 241 GGGGANTCFNCGKSGHFARECPDA 260

[Close]

BLAST of Csor.00g189780 vs. ExPASy TrEMBL
Match: A0A5D3CJR2 (Cold shock domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00680 PE=4 SV=1)

HSP 1 Score: 461 bits (1187), Expect = 6.23e-163
Identity = 249/271 (91.88%), Postives = 253/271 (93.36%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGG----RGGRGGGGGG-YGFGGWRGGDRRNGSSG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGG    RGGRGGGGGG YGFGGWRGGDRRNG+SG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120

Query: 121 AGGGGCYQCGEQGHLARDCTRASNR--GGGGGGGGCFTCGEVGHLARDCPRGNSGGGG-- 180
            GGGGCYQCGEQGHLARDCTR SNR  GGGGGGGGCFTCGEVGHLARDCPRGNSGGGG  
Sbjct: 121 GGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG 180

Query: 181 -AGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGG-CFNCGEYGHLARDCQNESRGSGGG 240
            +GGGACYNCGGFGHLARDCNRGGAGGGSGGGGGG CFNCGEYGH+ARDCQNESRGSGGG
Sbjct: 181 GSGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGG 240

Query: 241 GG--GRFGGGGANTCFNCGKSGHFARECPDV 258
           GG  G  GGGG+NTCFNCGKSGHFARECPD 
Sbjct: 241 GGRFGGGGGGGSNTCFNCGKSGHFARECPDA 271

[Close]

BLAST of Csor.00g189780 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 211.5 bits (537), Expect = 8.4e-55
Identity = 154/300 (51.33%), Postives = 181/300 (60.33%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNF--GGGG-----GRGGR-----GGGGGGYGFGGWRGGDRRNG 124
           KAIEV A  G S N+++N   G GG     G  G       GG GG  FGG  GG RR+G
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGG--GGGRRSG 129

Query: 125 SSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGG-GCFTCGEVGHLARDCPRGNSGG 184
               G G CY CG+ GH ARDC ++   N GGGGGGG  C++CGEVGHLA+DC RG SGG
Sbjct: 130 ----GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDC-RGGSGG 189

Query: 185 G--------GAGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQN 244
                    G+GG  CY CGG GH ARDC + G GG  GGGG  C+ CG  GH+A+ C +
Sbjct: 190 NRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG-GGNVGGGGSTCYTCGGVGHIAKVCTS 249

Query: 245 ESRGSGGGGGGRF-----------------------GGGGANTCFNCGKSGHFARECPDV 259
           +   SGGGGGGR                        GGGG+N CF CGK GHFAREC  V
Sbjct: 250 KI-PSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFARECTSV 300

[Close]

BLAST of Csor.00g189780 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 197.6 bits (501), Expect = 1.3e-50
Identity = 145/293 (49.49%), Postives = 165/293 (56.31%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGY------------GFGGWRGGDRRNG 124
           KA+ V A  G S  + +N  G G R G GGG G Y            G GG  GG  R  
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRG-GGGSGCYNCGELGHISKDCGIGGGGGGGERR- 129

Query: 125 SSGAGGGGCYQCGEQGHLARDCTRASN---RGG-GGGGGGCFTCGEVGHLARDCPRGNSG 184
               GG GCY CG+ GH ARDCT A N   RG   GG  GC+TCG+VGH+ARDC + + G
Sbjct: 130 --SRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVG 189

Query: 185 GGG------AGGGACYNCGGFGHLARDCNRGGAGGG--SGGGGGG-CFNCGEYGHLARDC 244
            G        G   CY CG  GH ARDC +  A G   SGGGG G C++CG  GH+ARDC
Sbjct: 190 NGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC 249

Query: 245 QNESRGSGG----GGGGRF----------GGGGANTCFNCGKSGHFARECPDV 259
             + + S G    GG G            GGG  N C+ CGK GHFAREC  V
Sbjct: 250 ATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECSSV 298

[Close]

BLAST of Csor.00g189780 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 145.6 bits (366), Expect = 5.7e-35
Identity = 105/216 (48.61%), Postives = 123/216 (56.94%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64  SKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGGCYQ 123
            KAIEV   DG+    + N GGGG  GGRGG GGG G GG RGG    GS G G GG   
Sbjct: 73  PKAIEVSGPDGAP--VQGNSGGGGSSGGRGGFGGGGGRGGGRGG----GSYGGGYGG--- 132

Query: 124 CGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACYNCGGF 183
                        +  RGGGGG   CF CGE GH+AR+C +G  G  G GGG  Y  GG 
Sbjct: 133 -----------RGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG- 192

Query: 184 GHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDC 220
                       GGG GGGG  C++CGE GH ARDC
Sbjct: 193 ------------GGGGGGGGLSCYSCGESGHFARDC 195

[Close]

BLAST of Csor.00g189780 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 143.3 bits (360), Expect = 2.8e-34
Identity = 106/226 (46.90%), Postives = 127/226 (56.19%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64  SKAIEVVALDGSSGNRRDNFGGGGGRGGRGGG-----GGGYGFGGWRGGDRRNGSSGAGG 123
            KAI+V   DG+        G  GGRGG GGG     G G G+GG  GG    G  G GG
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRGG 128

Query: 124 GGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGAGGGACY 183
             CY+CGE GH+ARDC+      GGGG GG                   GGGG GGG  Y
Sbjct: 129 SDCYKCGEPGHMARDCSE-----GGGGYGG-------------------GGGGYGGGGGY 188

Query: 184 NCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESR 225
             GG G+       GG G G GGGGG C++CGE GH ARDC +  R
Sbjct: 189 GGGGGGY-------GGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

The following BLAST results are available for this feature:

BLAST of Csor.00g189780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94C69	1.2e-53	51.33	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	1.8e-49	49.49	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]
P27484	4.1e-38	49.62	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q38896	8.0e-34	48.61	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]
Q41188	4.0e-33	46.90	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]

BLAST of Csor.00g189780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577777.1	1.49e-184	100.00	Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG701581...	[more]
XP_022923189.1	1.86e-178	97.74	cold shock domain-containing protein 3-like [Cucurbita moschata]	[more]
XP_023551806.1	1.59e-177	98.12	cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022965328.1	6.00e-177	98.48	cold shock domain-containing protein 3-like [Cucurbita maxima]	[more]
XP_004146143.1	2.41e-165	92.65	cold shock domain-containing protein 3 [Cucumis sativus] >KGN55657.1 hypothetica...	[more]

BLAST of Csor.00g189780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5N5	9.01e-179	97.74	cold shock domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1HNK3	2.91e-177	98.48	cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A0A0L4X7	1.17e-165	92.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002765 PE=4 SV=1	[more]
A0A6J1GAE9	8.82e-165	93.94	cold shock protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452385 PE=4 SV=...	[more]
A0A5D3CJR2	6.23e-163	91.88	Cold shock domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of Csor.00g189780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17870.1	8.4e-55	51.33	cold shock domain protein 3	[more]
AT4G36020.1	1.3e-50	49.49	cold shock domain protein 1	[more]
AT2G21060.1	5.7e-35	48.61	glycine-rich protein 2B	[more]
AT4G38680.1	2.8e-34	46.90	glycine rich protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 8..23 score: 61.03 coord: 44..62 score: 40.09 coord: 29..38 score: 59.44
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 7..71 e-value: 1.1E-22 score: 79.7
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 5..71 score: 30.335478
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 7..69 e-value: 3.35985E-24 score: 90.3306
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 167..182 score: 39.84 coord: 86..97 score: 45.83 coord: 227..245 score: 40.13 coord: 195..205 score: 39.77
None	No IPR available	GENE3D	2.40.50.140		coord: 1..70 e-value: 4.4E-25 score: 89.4
None	No IPR available	GENE3D	4.10.60.10		coord: 199..228 e-value: 1.1E-7 score: 33.3 coord: 237..262 e-value: 1.6E-8 score: 36.0 coord: 172..198 e-value: 2.3E-5 score: 25.9 coord: 144..171 e-value: 1.4E-7 score: 33.0 coord: 107..143 e-value: 3.2E-6 score: 28.6
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 137..258 coord: 111..143
None	No IPR available	PANTHER	PTHR46565:SF12	COLD SHOCK PROTEIN 2	coord: 111..143 coord: 137..258
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 1..111
None	No IPR available	PANTHER	PTHR46565:SF12	COLD SHOCK PROTEIN 2	coord: 1..111
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 7..72 e-value: 1.5E-24 score: 97.6
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 148..164 e-value: 2.6E-5 score: 33.7 coord: 176..192 e-value: 4.0E-4 score: 29.7 coord: 205..221 e-value: 3.2E-5 score: 33.4 coord: 120..136 e-value: 2.9E-4 score: 30.2 coord: 241..257 e-value: 5.9E-6 score: 35.8
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 176..190 e-value: 3.4E-6 score: 26.9 coord: 240..256 e-value: 5.1E-8 score: 32.7 coord: 205..220 e-value: 5.0E-7 score: 29.5 coord: 120..135 e-value: 2.8E-6 score: 27.2 coord: 148..163 e-value: 1.1E-7 score: 31.6
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 149..164 score: 11.086722
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 121..136 score: 11.004309
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 206..221 score: 10.921894
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 177..190 score: 10.476859
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 242..257 score: 11.432861
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 19..38
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 193..224
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 105..136
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 223..260
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 138..193
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 4..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g189780.m01	Csor.00g189780.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding