Csor.00g189180 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g189180
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	33 kDa ribonucleoprotein, chloroplastic
Location	Csor_Chr16: 8769435 .. 8772769 (+)
RNA-Seq Expression	Csor.00g189180
Synteny	Csor.00g189180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGCTCGAATCTGCAATTCCAATTATCTCTCAATACATTTCTTCTTCTTCCTCGAAATTATCCTTCCATAAACTTCCCTCCGCCATTAAGCTTCGCATTTCCTTCTCCTCTCCTCTCCTTTCCCTCAATCCCACAACCGCCGTTTCCCCTCTCCCCCTCTTTCTCACAAACCCATCGCGAAATCGCGGCGGCGGGGGTCGTTTTTGCTCTGCAGTGCAAGAGGTTAGTTTGGAGGAAGCTTCGGAGGAAAATCAGGATGTGAATCAGAAGAGAAAGCTTTACATATTCAATTTGCCTTGGTCTTTCTCTGTCGTCGACATTAAGGAGCACTTTGGACAATGCGGAACTGTCACTGATGTTGAGGTTCTTCTTCTTTTGTTCGTTCTTTGTGTGTGTGTGTGTGTGTGCGCTGATAATGTCTCTGTATCTGATGAATGTGTGTTGGAATGTGTTTGTACTTGTAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCAGAAATTTGACTCTCAAGTACGTTTTCTTCTACCTATTTCTGCTCGCTTTCTGTTTGGTTATTTGCCCCAATGAATTCTGTTCTATTTTTTTACTGGTATTCTACCAATAGCTTGTTTGGTTTGGTTCTGAAATTTTGAAATTCCATATTTCAATATGAATTTTGGTATATATAATACTCTTCAGACTTGCTAAACACTTGAAAACTACTTTTGGAATCCTCCATAAGTCCCTTTTTTCGCTTTTGATATCTGTTAAGTTGCTGGATTGGATCACAGATTACTATAGGGTTTGAACCGATTCCTTCTACTTTTTCACATGTTTCAATGCCACTAGATCAATTTTGGTTCAAAAGCTTTGTTTGATCATAGTTTAATTAATCAAAACTTGAGTATAGAAATTTGAACCACGAACTTACATAAAATGAGTATATGTCAATTATGATTCATCTTTACGGCGAAACTTTATAGTTTTAAGTTCATGAATTCGAAATATATTGGTCAGTTACTTAAGACTATTAATATTCTATAAGGTTTTTAATACCAAATGTTGTAGGGTTAAATGATTGCTAATTTTTCAATACAAGCGATTCATGTGTTAAAGAGGATTAATTCTGTCAAATCTTGAGGGCAGAGTTTTTACATCCTTTATCATCTAACATGGTCTACAAATATATAAACAGATCTCTATTGAGTATTATCAATGTTATGTAGTGTCAGACAACATTTAAAGTTCTGGCTCTGAAGAAGTTAATTAAACAAGTCCTAAAAACTCAGGGTATCATAACTACTTCCTATTATGACATATATTACAACCTCCCAAGTCCACCGTTAGCAGAGATACTGTCTTCTTTGAGCTTTCCCTTGTGCGCTTCCTCTCAAAATTTTTAAAACGCGTCTACTAGAGAGAGGGTTCCACACCCTTATAAAGAATGTTTCGTTCCCCTCTCCAATTGATGTGGGATCTCACAATCCACCCCCGTCGGGCTCCAGCGTCTCGCTGGCACTCGTTCTTCTCTCTTCAATCAATGTGGGATCTCACAATCCATCCCCCTTCGAGGCCTAGCGTCTCGCTGACACTCGTTCCTCTCTCTTCAATCGATGTGGGATCTCACAATCCATCTCCCTTCGAGGCCCAGCGTCTTCGTTGGCACACCATTTGTAACAGTCTAGCTCTGATACCATTTGTAACAGTCCAACCCCACCGCTAGTAGATATTGTCCTCTTTAGGCTTTTCCTTTTGGAATTCCCCTCAAGGTTTTTAAAACGCGTTTGCTAGGGAGAGGTTTTCACACCCTTATAAAGACTGTTTCGTTCCCCTCTCCAACTGATGTAGACCTCACATACATTGTAGTTATTTTGCTTTATATTGTCTCTATATACATAAACATTTCCCTTTCTAACATAGATATCTGGGTTCTGTTCATGGTAAATATTTCATGTTAATATGTTCCATGAAAACATATATTTCTGCAGGAAATATCAGGTAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTGAAGAAGCCTCCTCCTCCAAAACCTCCAGGCCCACCTCCTGGAGAGACTGTGCATAAGCTTTATGTATCAAATCTTGCATGGAAGGCGAGATCCACCAATCTCAGAGAATTCTTTTCTGAAAACTTCAACCCAATTGCAGCCAGGGTTGTCTTCGATAGCCCCTCTGGAAAATCTGCTGGCTATGGCTTTGTTTCTTTTGCTACTCGAGAGGAAGCAGAAACTGCACTTTCTTCATTGGAGGGGAAGGTAATTTACTTGCTCTGATCTTATTGACGGATAAACTTCTGTGTGATTGACCACCGACTCGGAGTGACTTTTCAAATGCTTAAAGACACTTTTTTACGCCCTTCATAAAATATTTCAAATAGGCCATGAGTGTTGGTTAATCTTGCAAACTATTCATGTTTGAGTGAACACCCTTATAAAATGAAAACTTACTAATGCTTACTTTTAAATATCATTCTTTCAATTCCCTCTTCAATGTCCATATCATTGGTTTGTAATCTATAACTTTTTGTTTTTGTTTTTTTTTTGGGCTACCAATGGATTAGCTACCCAAACAAACCAAGATACCCATATTTCTTCGGAAAGAATCTTATTTTGGACTTTGACCTTGCGAGCACCCACTCAAAATAGGGAGGGTGCACTAGCGCGAGAGAAAGAGCTCCTAACTACCGTACTTCTGGCTACCATTGGATTCTTGGTAGATAGGGTTTCCTAGGCTGGGATAGGTTGCTTTCAGTCCATTTTTTGGAATGATATGTTTATGTAAATAGATAGTTGTGTGACGTTTCAAATATTTGAAACTCGAGGATTGGGAATATGGGAATGTGAGGCAATTTAAAGTACCAGAATTACAATATTGGGTTCAAATCCACTGAAATGGGTCGATGAGCGTTTTAAAATTTGTTAACCTATGTATAGCTTGACTGATTAAAAACATATATTCATCGACCAAAAAATATATGTTTTGGACGTAGAAATGAGTACTAAAAACTTACTAATGATAACATTTTGGCCCCTACTAGCTTTGTACAAGTTCTAATTTCTCCAAACTCTCATCCTAATCAGGTGTAATGTTCCATTTCATTCCTTCCTTACATATTTGAAATGCTTGAGCTTCTCTTCTCAGGAACTGATGGGCAGACCCCTTCGACTAAAATTCAGTGAAAGAACTGTTGTTAAATCAGAAACCCCAAAAGAAGACACTGTTGAAAGCCAACCTGAAGAATCACAGATCCCCTCGGATTCAACATCAGATTGA

mRNA sequence

ATGGCGACGCTCGAATCTGCAATTCCAATTATCTCTCAATACATTTCTTCTTCTTCCTCGAAATTATCCTTCCATAAACTTCCCTCCGCCATTAAGCTTCGCATTTCCTTCTCCTCTCCTCTCCTTTCCCTCAATCCCACAACCGCCGTTTCCCCTCTCCCCCTCTTTCTCACAAACCCATCGCGAAATCGCGGCGGCGGGGGTCGTTTTTGCTCTGCAGTGCAAGAGGTTAGTTTGGAGGAAGCTTCGGAGGAAAATCAGGATGTGAATCAGAAGAGAAAGCTTTACATATTCAATTTGCCTTGGTCTTTCTCTGTCGTCGACATTAAGGAGCACTTTGGACAATGCGGAACTGTCACTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCAGAAATTTGACTCTCAAGAAATATCAGGTAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTGAAGAAGCCTCCTCCTCCAAAACCTCCAGGCCCACCTCCTGGAGAGACTGTGCATAAGCTTTATGTATCAAATCTTGCATGGAAGGCGAGATCCACCAATCTCAGAGAATTCTTTTCTGAAAACTTCAACCCAATTGCAGCCAGGGTTGTCTTCGATAGCCCCTCTGGAAAATCTGCTGGCTATGGCTTTGTTTCTTTTGCTACTCGAGAGGAAGCAGAAACTGCACTTTCTTCATTGGAGGGGAAGGAACTGATGGGCAGACCCCTTCGACTAAAATTCAGTGAAAGAACTGTTGTTAAATCAGAAACCCCAAAAGAAGACACTGTTGAAAGCCAACCTGAAGAATCACAGATCCCCTCGGATTCAACATCAGATTGA

Coding sequence (CDS)

ATGGCGACGCTCGAATCTGCAATTCCAATTATCTCTCAATACATTTCTTCTTCTTCCTCGAAATTATCCTTCCATAAACTTCCCTCCGCCATTAAGCTTCGCATTTCCTTCTCCTCTCCTCTCCTTTCCCTCAATCCCACAACCGCCGTTTCCCCTCTCCCCCTCTTTCTCACAAACCCATCGCGAAATCGCGGCGGCGGGGGTCGTTTTTGCTCTGCAGTGCAAGAGGTTAGTTTGGAGGAAGCTTCGGAGGAAAATCAGGATGTGAATCAGAAGAGAAAGCTTTACATATTCAATTTGCCTTGGTCTTTCTCTGTCGTCGACATTAAGGAGCACTTTGGACAATGCGGAACTGTCACTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCAGAAATTTGACTCTCAAGAAATATCAGGTAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTGAAGAAGCCTCCTCCTCCAAAACCTCCAGGCCCACCTCCTGGAGAGACTGTGCATAAGCTTTATGTATCAAATCTTGCATGGAAGGCGAGATCCACCAATCTCAGAGAATTCTTTTCTGAAAACTTCAACCCAATTGCAGCCAGGGTTGTCTTCGATAGCCCCTCTGGAAAATCTGCTGGCTATGGCTTTGTTTCTTTTGCTACTCGAGAGGAAGCAGAAACTGCACTTTCTTCATTGGAGGGGAAGGAACTGATGGGCAGACCCCTTCGACTAAAATTCAGTGAAAGAACTGTTGTTAAATCAGAAACCCCAAAAGAAGACACTGTTGAAAGCCAACCTGAAGAATCACAGATCCCCTCGGATTCAACATCAGATTGA

Protein sequence

MATLESAIPIISQYISSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPLFLTNPSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEESQIPSDSTSD

Homology

[Close]

BLAST of Csor.00g189180 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.0e-29
Identity = 88/233 (37.77%), Postives = 134/233 (57.51%), Query Frame = 0


Query: 72  SAVQEVSLEEASE--ENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGTVTDVEIIKQK- 131
           SA +E  +EE  E  E++ V   R LY+ NLP+S +   + E F + GTV +VEI+  + 
Sbjct: 92  SAEEEEEIEEKEERVESESVEGGR-LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRV 151

Query: 132 NGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAK----RLKKPPPPKPPGPPP 191
             RSRGFAFVTM S +EA+ AI+ FD  ++ GR +KV F +      ++    K      
Sbjct: 152 TDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQ 211

Query: 192 G--ETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFATREE 251
           G  ++ HKLYV+NL+W   S  LR+ F++    ++A+V++D  SG+S G+GF++F++ E 
Sbjct: 212 GFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEA 271

Query: 252 AETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEESQIPSDSTS 296
             +AL ++   EL GRPLRL  + +    S  P    VE+ PE     S+  S
Sbjct: 272 MNSALDTMNEVELEGRPLRLNVAGQKAPVSSPP---VVETSPENDSDNSELLS 320

[Close]

BLAST of Csor.00g189180 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.3e-29
Identity = 81/239 (33.89%), Postives = 130/239 (54.39%), Query Frame = 0


Query: 76  EVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGTVTDVEIIKQK-NGRSRG 135
           E  +EE  +  Q   ++ +LY+ NLP++ +  ++ + FG+ GTV DV+I+  K   RSRG
Sbjct: 99  EEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRG 158

Query: 136 FAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGE-------- 195
           F FVTM S +EA+ A+Q F+S +I GR +KV F           P  P  GE        
Sbjct: 159 FGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNF-----------PEVPRGGENEVMRTKI 218

Query: 196 ---------TVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSF 255
                    + HK+Y  NL W   S  L++ F +    + A+V+++  +G+S G+GF+SF
Sbjct: 219 RDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISF 278

Query: 256 ATREEAETALSSLEGKELMGRPLRLKF-SER---TVVKSETPKEDTVESQPEESQIPSD 293
            + E  ++AL+++ G E+ GR LRL   SER   TV      + +T E+  E +++ S+
Sbjct: 279 ESAENVQSALATMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLESNEVLSN 326

[Close]

BLAST of Csor.00g189180 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.1e-26
Identity = 86/262 (32.82%), Postives = 133/262 (50.76%), Query Frame = 0


Query: 16  SSSSSKLSFHKL-PSAIKLRISFSSPLLSLNPTTAVSPLPLFLTNPSRNRGGGGRFCSAV 75
           +S ++ LSF  L PS++ L +S SS   S      V+                  F    
Sbjct: 24  TSQTTSLSFFSLPPSSLNLSLSSSSSCFSSRFVRKVTL---------------SDFDQIE 83

Query: 76  QEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGTVTDVEIIKQK-NGRSR 135
                ++  EE ++ +   K+++ NLP+S     + E F + G V  VE+I  K  GRSR
Sbjct: 84  DVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSR 143

Query: 136 GFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPK---------PPGPPP 195
           GF FVTM+S +E +AA Q+F+  E+ GR ++V        PPP K           G   
Sbjct: 144 GFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-----SGPPPEKRENSSFRGGSRGGGS 203

Query: 196 GETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFATREEAE 255
            ++ +++YV NLAW      L   FSE    + A+VV+D  SG+S G+GFV++++ EE  
Sbjct: 204 FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 263

Query: 256 TALSSLEGKELMGRPLRLKFSE 267
            A+ SL+G +L GR +R+  +E
Sbjct: 264 NAIESLDGVDLNGRAIRVSPAE 265

[Close]

BLAST of Csor.00g189180 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-25
Identity = 87/275 (31.64%), Postives = 146/275 (53.09%), Query Frame = 0


Query: 14  YISSSSSKLSFHKLPSAIK-LRISFSSP-LLSLNPTTAVSPLPLFLTNPSRN------RG 73
           + +++ S  S+  L + +K + +S S P LLSLN  T   P  + + +   N      + 
Sbjct: 13  FFTTTKSISSYPFLSTQLKPISLSSSLPTLLSLNKRTTQFPTFVSVLSEDDNTLVLDDQE 72

Query: 74  GGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGTVTDVEII 133
            GG F S V E      +EE Q+ ++  KL++ NLP+      + + F Q G V   E+I
Sbjct: 73  QGGDFPSFVGEAG---ETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVI 132

Query: 134 -KQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPP 193
             ++  RSRGF FVTM++ +EA  A++ +   +++GR++ V  A      P   P    P
Sbjct: 133 YNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQP 192

Query: 194 GETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFATREEAE 253
               +++YV N+ W      L + FSE+   ++ARVVFD  SG+S G+GFV+ ++  E  
Sbjct: 193 ---TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMS 252

Query: 254 TALSSLEGKELMGRPLRLKFSERTVVKSETPKEDT 280
            A+++L+G+ L GR +R+  +E      E P+ +T
Sbjct: 253 EAIANLDGQTLDGRTIRVNAAE------ERPRRNT 275

[Close]

BLAST of Csor.00g189180 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.5e-25
Identity = 89/298 (29.87%), Postives = 152/298 (51.01%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSK-LSFHKLPSAIK------LRISFSSPLLSLNPTTAVSPL 60
           MAT    I +   + +++ SK  ++  L + +K      L  ++S  +LS    T+VS L
Sbjct: 14  MATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKLLHLSCTYSPCILSPKKKTSVSAL 73

Query: 61  -----------------PLFLTNPSRNRGGGGRFCSAV------QEVSLEEASEENQDVN 120
                             LF   PS        F  AV       EV  +E  EE Q+  
Sbjct: 74  QEEENTLILDGQGQESGDLFNFEPSGEETEEEGFVEAVGDAGESDEVEADEEEEEFQEPP 133

Query: 121 QKRKLYIFNLPWSFSVVDIKEHFGQCGTVTDVEIIKQKN-GRSRGFAFVTMASPDEAQAA 180
           +  KL++ NLP+      +   F Q G V   E+I  ++  +SRGF FVTM++ +EA+ A
Sbjct: 134 EDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKA 193

Query: 181 IQKFDSQEISGRVIKV-EFAKRLKKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREF 240
           ++ ++  +++GR++ V + A+R ++P  P    P   E  +++YV N+ W      L + 
Sbjct: 194 VEMYNRYDVNGRLLTVNKAARRGERPERP----PRTFEQSYRIYVGNIPWGIDDARLEQL 253

Query: 241 FSENFNPIAARVVFDSPSGKSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSE 267
           FSE+   ++ARVV+D  +G+S G+GFV+ A+  E   A+++L+G+ L GR +R+  +E
Sbjct: 254 FSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307

[Close]

BLAST of Csor.00g189180 vs. NCBI nr
Match: KAG6577717.1 (hypothetical protein SDJN03_25291, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015754.1 hypothetical protein SDJN02_23392 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 568 bits (1463), Expect = 1.01e-203
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPLFLTNP 60
           MATLESAIPIISQYISSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPLFLTNP
Sbjct: 1   MATLESAIPIISQYISSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPLFLTNP 60

Query: 61  SRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGTVT 120
           SRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGTVT
Sbjct: 61  SRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGTVT 120

Query: 121 DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPP 180
           DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPP
Sbjct: 121 DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPP 180

Query: 181 GPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFATR 240
           GPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFATR
Sbjct: 181 GPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFATR 240

Query: 241 EEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEESQIPSDSTSD 296
           EEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEESQIPSDSTSD
Sbjct: 241 EEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEESQIPSDSTSD 296

[Close]

BLAST of Csor.00g189180 vs. NCBI nr
Match: XP_022923294.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata])

HSP 1 Score: 551 bits (1419), Expect = 5.35e-197
Identity = 291/297 (97.98%), Postives = 291/297 (97.98%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSS-KLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPLFLTN 60
           MATLESAIPIISQYISSSSS KLS   LPSAIKLRISFSSPLLS NPTTAVSPLPLFLTN
Sbjct: 1   MATLESAIPIISQYISSSSSSKLSIRTLPSAIKLRISFSSPLLSFNPTTAVSPLPLFLTN 60

Query: 61  PSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGTV 120
           PSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKE FGQCGTV
Sbjct: 61  PSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQFGQCGTV 120

Query: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180
           TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP
Sbjct: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFAT 240
           PGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFAT
Sbjct: 181 PGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFAT 240

Query: 241 REEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEESQIPSDSTSD 296
           REEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEESQIPSDSTSD
Sbjct: 241 REEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEESQIPSDSTSD 297

[Close]

BLAST of Csor.00g189180 vs. NCBI nr
Match: XP_023007582.1 (29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 551 bits (1419), Expect = 6.68e-197
Identity = 292/303 (96.37%), Postives = 293/303 (96.70%), Query Frame = 0


Query: 1   MATLESAIPIISQYI-------SSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPL 60
           MATLESAIPIISQYI       SSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPL
Sbjct: 1   MATLESAIPIISQYIASSSSSSSSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPL 60

Query: 61  PLFLTNPSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHF 120
           PLFLTNP RNRGGG RFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKE F
Sbjct: 61  PLFLTNPWRNRGGGDRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQF 120

Query: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180
           GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK
Sbjct: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180

Query: 181 PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG 240
           PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG
Sbjct: 181 PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG 240

Query: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEESQIPSDS 296
           FVSFATREEAETALSSLEGKELMGRPLRLKFSER+VVKSETPKEDTVESQPEESQIPSDS
Sbjct: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEESQIPSDS 300

[Close]

BLAST of Csor.00g189180 vs. NCBI nr
Match: XP_023551853.1 (29 kDa ribonucleoprotein A, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 541 bits (1395), Expect = 2.82e-193
Identity = 289/301 (96.01%), Postives = 290/301 (96.35%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSS-----KLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPL 60
           MATLESAIPIISQYISSSSS     KLSF  LPSAIKLRIS SSPLLSLNPTTAVSPLPL
Sbjct: 1   MATLESAIPIISQYISSSSSSSSSSKLSFRTLPSAIKLRISSSSPLLSLNPTTAVSPLPL 60

Query: 61  FLTNPSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQ 120
           FLTNPSRNRGGGGRF SAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKE FGQ
Sbjct: 61  FLTNPSRNRGGGGRFGSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQFGQ 120

Query: 121 CGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPP 180
           CGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPP
Sbjct: 121 CGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPP 180

Query: 181 PPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFV 240
           PPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFV
Sbjct: 181 PPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFV 240

Query: 241 SFATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEESQIPSDSTS 296
           SFATREEAETALSSLEGKELMGRPLRLKFSER+VVKSETP EDTVESQPEESQIPSDSTS
Sbjct: 241 SFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPTEDTVESQPEESQIPSDSTS 300

[Close]

BLAST of Csor.00g189180 vs. NCBI nr
Match: XP_038904114.1 (33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 488 bits (1257), Expect = 1.73e-172
Identity = 260/289 (89.97%), Postives = 270/289 (93.43%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPLFLTNP 60
           MATLESAIPIISQYISSSSSKL  +KLPSAIKLRISFSSPL  LNPTTA+SPL L L   
Sbjct: 1   MATLESAIPIISQYISSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLHL--- 60

Query: 61  SRNRGGGG--RFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGT 120
           SRN GGGG  R CSAVQEVSLEEASE+N+DVNQK+KLYIFNLPWSFSVVDIKE FGQCGT
Sbjct: 61  SRNHGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGT 120

Query: 121 VTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPK 180
           VTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPK
Sbjct: 121 VTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPK 180

Query: 181 PPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFA 240
           PPGPPP ETV+KLYVSNLAWK RS+NLREFFSENFNP+AARVVFDSPSG+SAGYGFVSFA
Sbjct: 181 PPGPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFA 240

Query: 241 TREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 287
           TREEAETALSSLEGKELMGRPLRLKFSER V +SETPKED VESQPEES
Sbjct: 241 TREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 286

[Close]

BLAST of Csor.00g189180 vs. ExPASy TrEMBL
Match: A0A6J1E5Z7 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431035 PE=4 SV=1)

HSP 1 Score: 551 bits (1419), Expect = 2.59e-197
Identity = 291/297 (97.98%), Postives = 291/297 (97.98%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSS-KLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPLFLTN 60
           MATLESAIPIISQYISSSSS KLS   LPSAIKLRISFSSPLLS NPTTAVSPLPLFLTN
Sbjct: 1   MATLESAIPIISQYISSSSSSKLSIRTLPSAIKLRISFSSPLLSFNPTTAVSPLPLFLTN 60

Query: 61  PSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGTV 120
           PSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKE FGQCGTV
Sbjct: 61  PSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQFGQCGTV 120

Query: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180
           TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP
Sbjct: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFAT 240
           PGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFAT
Sbjct: 181 PGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFAT 240

Query: 241 REEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEESQIPSDSTSD 296
           REEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEESQIPSDSTSD
Sbjct: 241 REEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEESQIPSDSTSD 297

[Close]

BLAST of Csor.00g189180 vs. ExPASy TrEMBL
Match: A0A6J1KZ42 (29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111500156 PE=4 SV=1)

HSP 1 Score: 551 bits (1419), Expect = 3.23e-197
Identity = 292/303 (96.37%), Postives = 293/303 (96.70%), Query Frame = 0


Query: 1   MATLESAIPIISQYI-------SSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPL 60
           MATLESAIPIISQYI       SSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPL
Sbjct: 1   MATLESAIPIISQYIASSSSSSSSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPL 60

Query: 61  PLFLTNPSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHF 120
           PLFLTNP RNRGGG RFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKE F
Sbjct: 61  PLFLTNPWRNRGGGDRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQF 120

Query: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180
           GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK
Sbjct: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180

Query: 181 PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG 240
           PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG
Sbjct: 181 PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG 240

Query: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEESQIPSDS 296
           FVSFATREEAETALSSLEGKELMGRPLRLKFSER+VVKSETPKEDTVESQPEESQIPSDS
Sbjct: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEESQIPSDS 300

[Close]

BLAST of Csor.00g189180 vs. ExPASy TrEMBL
Match: A0A1S3BK84 (28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 PE=4 SV=1)

HSP 1 Score: 478 bits (1231), Expect = 7.37e-169
Identity = 252/288 (87.50%), Postives = 268/288 (93.06%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSS-KLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPLFLTN 60
           MATLESA+PIIS Y+SSSSS KL F+KLPSAIKLRISFSSPLLSLNP T +SP+     N
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISF---N 60

Query: 61  PSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGTV 120
            SRN GGGGR CSAVQEVSLEEASEE QDVNQK+KLYIFNLPWS SVVDIKE FGQCGTV
Sbjct: 61  SSRNPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTV 120

Query: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180
           +DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR K+PPPPKP
Sbjct: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKP 180

Query: 181 PGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFAT 240
           PGPPPGETV+KLYVSNLAWK RS+NLR+FFSE+FNPIAARVVFDSPSG+SAGYGFVSFAT
Sbjct: 181 PGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFAT 240

Query: 241 REEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 287
           REEA+TALSSLEGKELMGRPLRLKFSER+V +SETPKED VESQPEES
Sbjct: 241 REEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285

[Close]

BLAST of Csor.00g189180 vs. ExPASy TrEMBL
Match: A0A0A0L1U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1)

HSP 1 Score: 476 bits (1224), Expect = 9.57e-168
Identity = 251/291 (86.25%), Postives = 265/291 (91.07%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSS----KLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPLF 60
           M T+ES +PIIS YISSSSS    KL F+KLPS IKLRISFSSPLLSLNPTT +SP    
Sbjct: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSF- 60

Query: 61  LTNPSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQC 120
             N SRNRGGG R CSA+QEV+LEEASEENQDVNQKRKLYIFNLPWS SVVDIKE FGQC
Sbjct: 61  --NSSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQC 120

Query: 121 GTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPP 180
           GTV+DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPP
Sbjct: 121 GTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPP 180

Query: 181 PKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVS 240
           PKPPGPPPGETV+KLYVSNLAWK RS NLR+FFSENFNPIAARVVFDSP+G+SAGYGFVS
Sbjct: 181 PKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVS 240

Query: 241 FATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 287
           FATREEA+TALSSLEGKELMGRPLRLKFSER V ++ETPKED VESQPEES
Sbjct: 241 FATREEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288

[Close]

BLAST of Csor.00g189180 vs. ExPASy TrEMBL
Match: A0A5A7UAR3 (28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001500 PE=4 SV=1)

HSP 1 Score: 470 bits (1209), Expect = 1.54e-165
Identity = 250/288 (86.81%), Postives = 266/288 (92.36%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSS-KLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPLFLTN 60
           MATLESA+PIIS Y+SSSSS KL F+KLPSAIKLRISFSSPLLSLNP T +SP+     N
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISF---N 60

Query: 61  PSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGTV 120
            SRN GGGGR CSAVQEVSLEEASEE QDVNQK+KLYIFNLPWS SVVDIKE FGQCGTV
Sbjct: 61  SSRNPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTV 120

Query: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180
           +D  IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR K+PPPPKP
Sbjct: 121 SD--IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKP 180

Query: 181 PGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFAT 240
           PGPPPGETV+KLYVSNLAWK RS+NLR+FFSE+FNPIAARVVFDSPSG+SAGYGFVSFAT
Sbjct: 181 PGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFAT 240

Query: 241 REEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 287
           REEA+TALSSLEGKELMGRPLRLKFSER+V +SETPKED VESQPEES
Sbjct: 241 REEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 283

[Close]

BLAST of Csor.00g189180 vs. TAIR 10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 276.2 bits (705), Expect = 3.1e-74
Identity = 163/294 (55.44%), Postives = 205/294 (69.73%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSK-LSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPLFLTN 60
           MA LE+++ I S   SSSSSK   F K  S++KL        LSL   + +SP+    + 
Sbjct: 1   MAVLEASLSIFSFSSSSSSSKPYLFSKRSSSLKL------TALSLRIPSNLSPVFSLRSG 60

Query: 61  PSRNRGGGGRFC-------SAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEH 120
              +R      C       SA +E S EE +EE Q+ N KRKL++FNLPWS SV DI E 
Sbjct: 61  SDNSRRLVSVLCSVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISEL 120

Query: 121 FGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLK 180
           FGQCGTV +VEII+QK+G++RGFAFVTMAS +EAQAAI KFD+ ++SGR+I V FA+R K
Sbjct: 121 FGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFK 180

Query: 181 KPPPPKP---PGPPPGETVHKLYVSNLAWKARSTNLREFF-SENFNPIAARVVFDSPSGK 240
           KP P  P   P P PG+T HKLYVSNLAWKARST+LRE F + +FNP++ARVVF  P G+
Sbjct: 181 KPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGR 240

Query: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVES 283
           S+GYGFVSFATREEAE A++ L GKE+MGRP+ LKFS R+   SE+   D+VE+
Sbjct: 241 SSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRSA--SESEDGDSVEA 286

[Close]

BLAST of Csor.00g189180 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-34
Identity = 87/242 (35.95%), Postives = 142/242 (58.68%), Query Frame = 0


Query: 60  PSRNRGGGGRFCSAVQEVSLEEASEEN------QDVNQKRKLYIFNLPWSFSVVDIKEHF 119
           P+++R     F +  QE  LE +S  +      ++   K +L   N+PW+ +  DI+  F
Sbjct: 55  PAKSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLF 114

Query: 120 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 179
            + G+V D+E+   K  R+RG  F+ MASP+EA  A++  +S E  GR +KV++AK  KK
Sbjct: 115 EKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKK 174

Query: 180 P--PPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFF-SENFNPIAARVVFDSPSGKSA 239
               P + P P P      L+V+NLA++AR+ +L+EFF ++  N ++  V+F     +S+
Sbjct: 175 KTYAPRETPSPVP---TFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSS 234

Query: 240 GYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERTV----VKSETPKEDTVESQPEE 289
           GYGFVSF T+++AE AL   +GK+ +GRP+RL  S++ V     +   P E+  E +P +
Sbjct: 235 GYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEPSQ 293

[Close]

BLAST of Csor.00g189180 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 138.3 bits (347), Expect = 1.0e-32
Identity = 79/204 (38.73%), Postives = 126/204 (61.76%), Query Frame = 0


Query: 92  KRKLYIFNLPWSFSVVDIKEHFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQ 151
           K +L   N+PW+ +  DI+  F + G+V D+E+   K  R+RG  F+ MASP+EA  A++
Sbjct: 33  KTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALK 92

Query: 152 KFDSQEISGRVIKVEFAKRLKKP--PPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFF 211
             +S E  GR +KV++AK  KK    P + P P P      L+V+NLA++AR+ +L+EFF
Sbjct: 93  SLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVP---TFNLFVANLAFEARAKHLKEFF 152

Query: 212 -SENFNPIAARVVFDSPSGKSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERT 271
            ++  N ++  V+F     +S+GYGFVSF T+++AE AL   +GK+ +GRP+RL  S++ 
Sbjct: 153 DADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQF 212

Query: 272 V----VKSETPKEDTVESQPEESQ 289
           V     +   P E+  E +P +S+
Sbjct: 213 VKLQAKEGLQPPEEEAEEEPSQSE 233

[Close]

BLAST of Csor.00g189180 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-30
Identity = 81/239 (33.89%), Postives = 130/239 (54.39%), Query Frame = 0


Query: 76  EVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGTVTDVEIIKQK-NGRSRG 135
           E  +EE  +  Q   ++ +LY+ NLP++ +  ++ + FG+ GTV DV+I+  K   RSRG
Sbjct: 99  EEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRG 158

Query: 136 FAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGE-------- 195
           F FVTM S +EA+ A+Q F+S +I GR +KV F           P  P  GE        
Sbjct: 159 FGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNF-----------PEVPRGGENEVMRTKI 218

Query: 196 ---------TVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSF 255
                    + HK+Y  NL W   S  L++ F +    + A+V+++  +G+S G+GF+SF
Sbjct: 219 RDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISF 278

Query: 256 ATREEAETALSSLEGKELMGRPLRLKF-SER---TVVKSETPKEDTVESQPEESQIPSD 293
            + E  ++AL+++ G E+ GR LRL   SER   TV      + +T E+  E +++ S+
Sbjct: 279 ESAENVQSALATMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLESNEVLSN 326

[Close]

BLAST of Csor.00g189180 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 126.3 bits (316), Expect = 4.0e-29
Identity = 87/241 (36.10%), Postives = 128/241 (53.11%), Query Frame = 0


Query: 36  SFSSPLLSLNPTTAVSPLPLFLTNPSRNRGGGGRFCSAVQEVSLEEASEENQD------- 95
           S +  LL  N +T   P PL +++ S +R    RF    + ++++   EE  D       
Sbjct: 26  SSNQTLLRFNFST---PKPLLISSRSCSR----RFRVLSETITVKLEEEEKDDGASAVLD 85

Query: 96  --VNQKRKLYIFNLPWSFSVVDIKEHFGQCGTVTDVEIIKQKN-GRSRGFAFVTMASPDE 155
                  KLY  NLP++     + +          VE++  ++ G+SRGFAFVTM++ ++
Sbjct: 86  PPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVED 145

Query: 156 AQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNL 215
               I   D  E  GR +KV FA    KP P K P  P  ET HKL+V NL+W   S +L
Sbjct: 146 CNIIIDNLDGTEYLGRALKVNFA---DKPKPNKEPLYP--ETEHKLFVGNLSWTVTSESL 205

Query: 216 REFFSENFNPIAARVVFDSPSGKSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFS 267
              F E  + + ARVVFD  +G+S GYGFV ++++ E ETAL SL+G EL GR +R+  +
Sbjct: 206 AGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 254

The following BLAST results are available for this feature:

BLAST of Csor.00g189180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19684	1.0e-29	37.77	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q39061	2.3e-29	33.89	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
Q08935	3.1e-26	32.82	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P19682	1.2e-25	31.64	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19683	1.5e-25	29.87	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]

BLAST of Csor.00g189180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577717.1	1.01e-203	100.00	hypothetical protein SDJN03_25291, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923294.1	5.35e-197	97.98	33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata]	[more]
XP_023007582.1	6.68e-197	96.37	29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima]	[more]
XP_023551853.1	2.82e-193	96.01	29 kDa ribonucleoprotein A, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_038904114.1	1.73e-172	89.97	33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]

BLAST of Csor.00g189180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5Z7	2.59e-197	97.98	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KZ42	3.23e-197	96.37	29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1115...	[more]
A0A1S3BK84	7.37e-169	87.50	28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 ...	[more]
A0A0A0L1U2	9.57e-168	86.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1	[more]
A0A5A7UAR3	1.54e-165	86.81	28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Csor.00g189180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35410.1	3.1e-74	55.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.1	1.4e-34	35.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	1.0e-32	38.73	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	1.6e-30	33.89	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	4.0e-29	36.10	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 94..166 e-value: 9.7E-27 score: 104.8 coord: 190..263 e-value: 4.3E-21 score: 86.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 191..261 e-value: 7.5E-17 score: 60.9 coord: 95..164 e-value: 3.5E-18 score: 65.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 93..170 score: 18.973166
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 189..267 score: 17.557568
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 71..172 e-value: 3.7E-29 score: 103.7 coord: 173..278 e-value: 1.1E-22 score: 82.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 264..296
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 264..283
None	No IPR available	PANTHER	PTHR48025:SF6	CHLOROPLAST, PUTATIVE-RELATED	coord: 2..284
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 2..284
None	No IPR available	CDD	cd00590	RRM_SF	coord: 95..166 e-value: 1.17744E-24 score: 92.3681
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 85..175
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 174..267

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g189180.m01	Csor.00g189180.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding