Csor.00g189150 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g189150
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Imidazole glycerol phosphate synthase hisHF, chloroplastic
Location	Csor_Chr16: 8747872 .. 8748264 (-)
RNA-Seq Expression	Csor.00g189150
Synteny	Csor.00g189150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTCTACGGCGATGAAGACGACGTATGGAAATGTCCAAAACATCCTTCCAAACGGCGGAGGATCGGAATCTGTCCTCTCTGTCTCCGTGACCGCCTCGTCACTCTCTGTCCTGACTGCGCCAACGTCCGTCCCTGCAATTGTTGCGCCACTACCACAACTACTTCTTCTTCTTCTTCTTCTTCATCCTCTTTCTCTCGTTTCTCCTCCGCCGACCTCGCCTCTCTCGGATCCGTCGGCCGCCTCTCCAATCTCATCGACGGCGAGCCGGCTTTCCGCCGCTCTCGCTCTCTCGCTGCGATTCCATTTCTCCGATCGAGATCGCGGTTCGTCGCTGATTCTGGCGATGACTGCTCTTCATCCGGTAATAGCGCAAATTGTGTGGAATGA

mRNA sequence

ATGGCGTTCTACGGCGATGAAGACGACGTATGGAAATGTCCAAAACATCCTTCCAAACGGCGGAGGATCGGAATCTGTCCTCTCTGTCTCCGTGACCGCCTCGTCACTCTCTGTCCTGACTGCGCCAACGTCCGTCCCTGCAATTGTTGCGCCACTACCACAACTACTTCTTCTTCTTCTTCTTCTTCATCCTCTTTCTCTCGTTTCTCCTCCGCCGACCTCGCCTCTCTCGGATCCGTCGGCCGCCTCTCCAATCTCATCGACGGCGAGCCGGCTTTCCGCCGCTCTCGCTCTCTCGCTGCGATTCCATTTCTCCGATCGAGATCGCGGTTCGTCGCTGATTCTGGCGATGACTGCTCTTCATCCGGTAATAGCGCAAATTGTGTGGAATGA

Coding sequence (CDS)

ATGGCGTTCTACGGCGATGAAGACGACGTATGGAAATGTCCAAAACATCCTTCCAAACGGCGGAGGATCGGAATCTGTCCTCTCTGTCTCCGTGACCGCCTCGTCACTCTCTGTCCTGACTGCGCCAACGTCCGTCCCTGCAATTGTTGCGCCACTACCACAACTACTTCTTCTTCTTCTTCTTCTTCATCCTCTTTCTCTCGTTTCTCCTCCGCCGACCTCGCCTCTCTCGGATCCGTCGGCCGCCTCTCCAATCTCATCGACGGCGAGCCGGCTTTCCGCCGCTCTCGCTCTCTCGCTGCGATTCCATTTCTCCGATCGAGATCGCGGTTCGTCGCTGATTCTGGCGATGACTGCTCTTCATCCGGTAATAGCGCAAATTGTGTGGAATGA

Protein sequence

MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTTTTSSSSSSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCSSSGNSANCVE

Homology

[Close]

BLAST of Csor.00g189150 vs. NCBI nr
Match: KAG6577714.1 (hypothetical protein SDJN03_25288, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258 bits (658), Expect = 1.73e-86
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTTTTSSSS 60
           MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTTTTSSSS
Sbjct: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTTTTSSSS 60

Query: 61  SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS 120
           SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS
Sbjct: 61  SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS 120

Query: 121 SSGNSANCVE 130
           SSGNSANCVE
Sbjct: 121 SSGNSANCVE 130

[Close]

BLAST of Csor.00g189150 vs. NCBI nr
Match: XP_022923201.1 (uncharacterized protein LOC111430968 [Cucurbita moschata] >KAG7015751.1 hypothetical protein SDJN02_23389, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248 bits (634), Expect = 2.11e-81
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTTTTSSSS 60
           MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTTTTSSSS
Sbjct: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTTTTSSSS 60

Query: 61  SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS 120
           SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS
Sbjct: 61  SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS 120

Query: 121 SSGNSA 126
           SSGNSA
Sbjct: 121 SSGNSA 126

[Close]

BLAST of Csor.00g189150 vs. NCBI nr
Match: XP_023552753.1 (uncharacterized protein LOC111810294 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246 bits (629), Expect = 1.22e-80
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTTTTSSSS 60
           MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCA+VRPCNCCATTTTTSSSS
Sbjct: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCAHVRPCNCCATTTTTSSSS 60

Query: 61  SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS 120
           SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS
Sbjct: 61  SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS 120

Query: 121 SSGNSA 126
           SSGNSA
Sbjct: 121 SSGNSA 126

[Close]

BLAST of Csor.00g189150 vs. NCBI nr
Match: XP_022965250.1 (uncharacterized protein LOC111465171 [Cucurbita maxima])

HSP 1 Score: 246 bits (629), Expect = 1.22e-80
Identity = 124/126 (98.41%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTTTTSSSS 60
           MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRL++LCPDCANVRPCNCCATTTTTSSSS
Sbjct: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLISLCPDCANVRPCNCCATTTTTSSSS 60

Query: 61  SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS 120
           SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS
Sbjct: 61  SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS 120

Query: 121 SSGNSA 126
           SSGNSA
Sbjct: 121 SSGNSA 126

[Close]

BLAST of Csor.00g189150 vs. NCBI nr
Match: XP_023540514.1 (suppressor protein SRP40-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229 bits (583), Expect = 1.33e-73
Identity = 120/129 (93.02%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTTTT---S 60
           MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRL+TLCPDCANVRPCNCC TTTTT   S
Sbjct: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTTS 60

Query: 61  SSSSSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGD 120
           SSSSSSSSFSRFSSAD+ASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSR V+DS D
Sbjct: 61  SSSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDS-D 120

Query: 121 DCSSSGNSA 126
           DCSSSGNSA
Sbjct: 121 DCSSSGNSA 128

[Close]

BLAST of Csor.00g189150 vs. ExPASy TrEMBL
Match: A0A6J1E664 (uncharacterized protein LOC111430968 OS=Cucurbita moschata OX=3662 GN=LOC111430968 PE=4 SV=1)

HSP 1 Score: 248 bits (634), Expect = 1.02e-81
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTTTTSSSS 60
           MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTTTTSSSS
Sbjct: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTTTTSSSS 60

Query: 61  SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS 120
           SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS
Sbjct: 61  SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS 120

Query: 121 SSGNSA 126
           SSGNSA
Sbjct: 121 SSGNSA 126

[Close]

BLAST of Csor.00g189150 vs. ExPASy TrEMBL
Match: A0A6J1HN71 (uncharacterized protein LOC111465171 OS=Cucurbita maxima OX=3661 GN=LOC111465171 PE=4 SV=1)

HSP 1 Score: 246 bits (629), Expect = 5.89e-81
Identity = 124/126 (98.41%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTTTTSSSS 60
           MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRL++LCPDCANVRPCNCCATTTTTSSSS
Sbjct: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLISLCPDCANVRPCNCCATTTTTSSSS 60

Query: 61  SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS 120
           SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS
Sbjct: 61  SSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDDCS 120

Query: 121 SSGNSA 126
           SSGNSA
Sbjct: 121 SSGNSA 126

[Close]

BLAST of Csor.00g189150 vs. ExPASy TrEMBL
Match: A0A0A0L6G5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009520 PE=4 SV=1)

HSP 1 Score: 224 bits (572), Expect = 2.50e-72
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATT--TTTSS 60
           MAFYGDEDD+WKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATT  TTTSS
Sbjct: 1   MAFYGDEDDLWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTNTTTTSS 60

Query: 61  SSSSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDD 120
           SSSSSSSFSRFSSADL   GSVGRLSNLIDGEPAFRRSRSLAAIPFLRSR  FVADSGDD
Sbjct: 61  SSSSSSSFSRFSSADL---GSVGRLSNLIDGEPAFRRSRSLAAIPFLRSR--FVADSGDD 120

Query: 121 CSSSGNSA 126
           CSSSGNSA
Sbjct: 121 CSSSGNSA 123

[Close]

BLAST of Csor.00g189150 vs. ExPASy TrEMBL
Match: A0A6J1KTD6 (vitellogenin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498490 PE=4 SV=1)

HSP 1 Score: 224 bits (570), Expect = 5.91e-72
Identity = 118/128 (92.19%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTTTT--SS 60
           MAFYGDED+VWKCPKHPSKRRRIGICPLCLRDRL+TLCPDCANVRPCNCC TTTTT  SS
Sbjct: 1   MAFYGDEDNVWKCPKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60

Query: 61  SSSSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDD 120
           SSSSSSSFSRFSSAD+ASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSR V+DS D 
Sbjct: 61  SSSSSSSFSRFSSADVASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDSVD- 120

Query: 121 CSSSGNSA 126
           CSSSGNSA
Sbjct: 121 CSSSGNSA 127

[Close]

BLAST of Csor.00g189150 vs. ExPASy TrEMBL
Match: A0A6J1E8Z1 (suppressor protein SRP40-like OS=Cucurbita moschata OX=3662 GN=LOC111431922 PE=4 SV=1)

HSP 1 Score: 222 bits (566), Expect = 2.39e-71
Identity = 117/128 (91.41%), Postives = 121/128 (94.53%), Query Frame = 0


Query: 1   MAFYGDEDDVWKCPKHPSKRRRIGICPLCLRDRLVTLCPDCANVRPCNCCATTTTT--SS 60
           MAFYGDEDDVWKC KHPSKRRRIGICPLCLRDRL+TLCPDCANVRPCNCC TTTTT  SS
Sbjct: 1   MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSS 60

Query: 61  SSSSSSSFSRFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDD 120
           SSSSSSSFSRFSSAD+ SLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSR V+DS +D
Sbjct: 61  SSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRLVSDS-ED 120

Query: 121 CSSSGNSA 126
           CSSSGNSA
Sbjct: 121 CSSSGNSA 127

[Close]

BLAST of Csor.00g189150 vs. TAIR 10
Match: AT1G32690.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35200.1); Has 45 Blast hits to 45 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 88.2 bits (217), Expect = 5.3e-18
Identity = 62/130 (47.69%), Postives = 85/130 (65.38%), Query Frame = 0


Query: 6   DEDDVWKCPKHPSKRRRI---GICPLCLRDRLVTLCPDCANVRPCNCC--ATTTTTSSSS 65
           DED   +C KH SKR      G+CP CL +RL +LCPDCA+  PC+C   A  + + SSS
Sbjct: 2   DEDGFSQCSKHFSKRGYFSGGGVCPFCLHERLSSLCPDCAHDLPCSCSSRAAVSFSPSSS 61

Query: 66  SSSSSFSRFS---SADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGD 125
           SSSSSFS F+   S +++ +GSVGR+++LI+ EPAFRRS+S+ AIP    +   V DSG 
Sbjct: 62  SSSSSFSIFAGDISFNISGVGSVGRVASLIECEPAFRRSKSM-AIPI---KPDSVIDSGL 121

Query: 126 DCSSSGNSAN 128
           D   S  +++
Sbjct: 122 DHGRSKKTSS 127

[Close]

BLAST of Csor.00g189150 vs. TAIR 10
Match: AT2G35200.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32690.1); Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-12
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 0


Query: 10  VW-KCPKHPSKRRRI-GICPLCLRDRLVTLCPDCANVRPCNCCATTTTTSSSSSSSSSFS 69
           VW KC +H  +   + G+CP CL +RL +LCPDCA+  PC+ C    + SS      SF+
Sbjct: 19  VWQKCSRHEGRFVCVAGVCPYCLHERLSSLCPDCAHDLPCS-CTPRASVSSRGEGDVSFA 78

Query: 70  RFSSADLASLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSRSRFVADSGDD 119
           R        +GSVGR++NLI+ EPAFRRS S+    F  ++   + ++  D
Sbjct: 79  R--------IGSVGRVANLIECEPAFRRSTSITGPYFWSAKPEPILETEKD 120

The following BLAST results are available for this feature:

BLAST of Csor.00g189150 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g189150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577714.1	1.73e-86	100.00	hypothetical protein SDJN03_25288, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923201.1	2.11e-81	100.00	uncharacterized protein LOC111430968 [Cucurbita moschata] >KAG7015751.1 hypothet...	[more]
XP_023552753.1	1.22e-80	99.21	uncharacterized protein LOC111810294 [Cucurbita pepo subsp. pepo]	[more]
XP_022965250.1	1.22e-80	98.41	uncharacterized protein LOC111465171 [Cucurbita maxima]	[more]
XP_023540514.1	1.33e-73	93.02	suppressor protein SRP40-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g189150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E664	1.02e-81	100.00	uncharacterized protein LOC111430968 OS=Cucurbita moschata OX=3662 GN=LOC1114309...	[more]
A0A6J1HN71	5.89e-81	98.41	uncharacterized protein LOC111465171 OS=Cucurbita maxima OX=3661 GN=LOC111465171...	[more]
A0A0A0L6G5	2.50e-72	93.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009520 PE=4 SV=1	[more]
A0A6J1KTD6	5.91e-72	92.19	vitellogenin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498490 PE=4 SV=1	[more]
A0A6J1E8Z1	2.39e-71	91.41	suppressor protein SRP40-like OS=Cucurbita moschata OX=3662 GN=LOC111431922 PE=4...	[more]

BLAST of Csor.00g189150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32690.1	5.3e-18	47.69	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35200.1	2.0e-12	39.64	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34197:SF2	OS04G0591300 PROTEIN	coord: 1..118
None	No IPR available	PANTHER	PTHR34197	OS04G0591300 PROTEIN	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g189150.m01	Csor.00g189150.m01	mRNA