Csor.00g188140 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g188140
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr07: 7659539 .. 7659769 (+)
RNA-Seq Expression	Csor.00g188140
Synteny	Csor.00g188140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGAAACTTCATCAATGCCTGAGAAGGTGAAGAAGAGAGAGGAGAAGAGAGAAACCAACGACGGAGCCAGAGATGGGAAGAGAGAACCCAGATCCGGCCTCACGCGACGGAGCAGGCGCCGGAGCGAAGTCTTCTCCGAGCCCAGAAACCAGGCTGCCGGCGGAGAAGACCGCGAGGATCAAAACGGTGACGAGGAAGGCGTTGGAGATGAAAACTCTGGCCATTGA

mRNA sequence

ATGCCGGAAACTTCATCAATGCCTGAGAAGGTGAAGAAGAGAGAGGAGAAGAGAGAAACCAACGACGGAGCCAGAGATGGGAAGAGAGAACCCAGATCCGGCCTCACGCGACGGAGCAGGCGCCGGAGCGAAGTCTTCTCCGAGCCCAGAAACCAGGCTGCCGGCGGAGAAGACCGCGAGGATCAAAACGGTGACGAGGAAGGCGTTGGAGATGAAAACTCTGGCCATTGA

Coding sequence (CDS)

ATGCCGGAAACTTCATCAATGCCTGAGAAGGTGAAGAAGAGAGAGGAGAAGAGAGAAACCAACGACGGAGCCAGAGATGGGAAGAGAGAACCCAGATCCGGCCTCACGCGACGGAGCAGGCGCCGGAGCGAAGTCTTCTCCGAGCCCAGAAACCAGGCTGCCGGCGGAGAAGACCGCGAGGATCAAAACGGTGACGAGGAAGGCGTTGGAGATGAAAACTCTGGCCATTGA

Protein sequence

MPETSSMPEKVKKREEKRETNDGARDGKREPRSGLTRRSRRRSEVFSEPRNQAAGGEDREDQNGDEEGVGDENSGH

Homology

[Close]

BLAST of Csor.00g188140 vs. NCBI nr
Match: KAG6595644.1 (hypothetical protein SDJN03_12197, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139 bits (351), Expect = 2.32e-41
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MPETSSMPEKVKKREEKRETNDGARDGKREPRSGLTRRSRRRSEVFSEPRNQAAGGEDRE 60
          MPETSSMPEKVKKREEKRETNDGARDGKREPRSGLTRRSRRRSEVFSEPRNQAAGGEDRE
Sbjct: 1  MPETSSMPEKVKKREEKRETNDGARDGKREPRSGLTRRSRRRSEVFSEPRNQAAGGEDRE 60

Query: 61 DQNGDEEGVGDENSGH 76
          DQNGDEEGVGDENSGH
Sbjct: 61 DQNGDEEGVGDENSGH 76

[Close]

BLAST of Csor.00g188140 vs. NCBI nr
Match: KGN54879.1 (hypothetical protein Csa_012934 [Cucumis sativus])

HSP 1 Score: 47.4 bits (111), Expect = 9.77e-05
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 7  MPEKVKKREEKRETNDGARDGKREPRSGLTRRSRRRSEVFSEPRNQAAGGE-DREDQNGD 66
          M EKV KREEKR  NDG  D +R  RS + RRSR RS      R    GGE + +D+ G+
Sbjct: 1  MCEKVNKREEKRRGNDGGWDWQRTARSSVRRRSRSRSRS----RGSQGGGEAEGKDKGGN 60

Query: 67 EEGVGDENSGH 76
          +EG+GDE  GH
Sbjct: 61 QEGIGDEKLGH 67

[Close]

BLAST of Csor.00g188140 vs. ExPASy TrEMBL
Match: A0A0A0L1E6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G571750 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 4.73e-05
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 7  MPEKVKKREEKRETNDGARDGKREPRSGLTRRSRRRSEVFSEPRNQAAGGE-DREDQNGD 66
          M EKV KREEKR  NDG  D +R  RS + RRSR RS      R    GGE + +D+ G+
Sbjct: 1  MCEKVNKREEKRRGNDGGWDWQRTARSSVRRRSRSRSRS----RGSQGGGEAEGKDKGGN 60

Query: 67 EEGVGDENSGH 76
          +EG+GDE  GH
Sbjct: 61 QEGIGDEKLGH 67

The following BLAST results are available for this feature:

BLAST of Csor.00g188140 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g188140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595644.1	2.32e-41	100.00	hypothetical protein SDJN03_12197, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN54879.1	9.77e-05	50.70	hypothetical protein Csa_012934 [Cucumis sativus]	[more]

BLAST of Csor.00g188140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1E6	4.73e-05	50.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G571750 PE=4 SV=1	[more]

BLAST of Csor.00g188140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g188140.m01	Csor.00g188140.m01	mRNA